data_6N5A # _model_server_result.job_id 5oezUkjYE4nDNJj2pbeBZA _model_server_result.datetime_utc '2024-11-28 07:50:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 6N5A # _exptl.entry_id 6N5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6N5A _cell.length_a 87.404 _cell.length_b 87.404 _cell.length_c 524.848 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 43.702 -75.694084 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 87.404 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 52 1_555 A SG CYS 272 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 58 A CYS 64 1_555 A SG CYS 70 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf3 A SG CYS 91 A CYS 97 1_555 A SG CYS 133 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf4 A SG CYS 276 A CYS 281 1_555 A SG CYS 300 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf5 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 235 A ASN 240 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 82 B ASN 82 1_555 L C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6N5A _atom_sites.fract_transf_matrix[1][1] 0.011441 _atom_sites.fract_transf_matrix[1][2] 0.006606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 418 NAG NAG . D 4 PGE A 1 402 1 PGE PGE . E 5 PEG A 1 403 2 PEG PEG . F 6 EDO A 1 404 3 EDO EDO . G 6 EDO A 1 405 4 EDO EDO . H 6 EDO A 1 406 5 EDO EDO . I 7 PG4 A 1 407 6 PG4 PG4 . J 8 SO4 A 1 408 1 SO4 SO4 . K 8 SO4 A 1 409 2 SO4 SO4 . L 3 NAG B 1 201 271 NAG NAG . M 9 HOH A 1 501 1 HOH HOH . M 9 HOH A 2 502 12 HOH HOH . M 9 HOH A 3 503 3 HOH HOH . M 9 HOH A 4 504 9 HOH HOH . M 9 HOH A 5 505 11 HOH HOH . M 9 HOH A 6 506 14 HOH HOH . M 9 HOH A 7 507 18 HOH HOH . M 9 HOH A 8 508 15 HOH HOH . M 9 HOH A 9 509 10 HOH HOH . M 9 HOH A 10 510 17 HOH HOH . M 9 HOH A 11 511 8 HOH HOH . M 9 HOH A 12 512 13 HOH HOH . M 9 HOH A 13 513 6 HOH HOH . M 9 HOH A 14 514 22 HOH HOH . M 9 HOH A 15 515 21 HOH HOH . M 9 HOH A 16 516 5 HOH HOH . M 9 HOH A 17 517 2 HOH HOH . M 9 HOH A 18 518 20 HOH HOH . M 9 HOH A 19 519 4 HOH HOH . M 9 HOH A 20 520 7 HOH HOH . M 9 HOH A 21 521 19 HOH HOH . N 9 HOH B 1 301 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 3 45.772 -11.982 -32.254 1 95.61 ? C1 NAG 201 B 1 HETATM 2 C C2 NAG . . . L 3 46.316 -11.401 -30.938 1 106.26 ? C2 NAG 201 B 1 HETATM 3 C C3 NAG . . . L 3 45.716 -10.019 -30.53 1 114.43 ? C3 NAG 201 B 1 HETATM 4 C C4 NAG . . . L 3 45.317 -9.056 -31.672 1 118.97 ? C4 NAG 201 B 1 HETATM 5 C C5 NAG . . . L 3 44.596 -9.96 -32.673 1 113.55 ? C5 NAG 201 B 1 HETATM 6 C C6 NAG . . . L 3 43.863 -9.229 -33.799 1 120.09 ? C6 NAG 201 B 1 HETATM 7 C C7 NAG . . . L 3 46.75 -13.225 -29.264 1 128.97 ? C7 NAG 201 B 1 HETATM 8 C C8 NAG . . . L 3 46.051 -13.954 -28.13 1 130.18 ? C8 NAG 201 B 1 HETATM 9 N N2 NAG . . . L 3 45.951 -12.342 -29.876 1 123.61 ? N2 NAG 201 B 1 HETATM 10 O O3 NAG . . . L 3 46.644 -9.392 -29.647 1 117.19 ? O3 NAG 201 B 1 HETATM 11 O O4 NAG . . . L 3 44.483 -7.906 -31.272 1 134.03 ? O4 NAG 201 B 1 HETATM 12 O O5 NAG . . . L 3 45.567 -10.901 -33.179 1 96.96 ? O5 NAG 201 B 1 HETATM 13 O O6 NAG . . . L 3 43.115 -10.199 -34.547 1 125.65 ? O6 NAG 201 B 1 HETATM 14 O O7 NAG . . . L 3 47.931 -13.401 -29.564 1 107.04 ? O7 NAG 201 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #