data_6N5F # _model_server_result.job_id F3QSYDuhg_Mvox2Y6EAFQA _model_server_result.datetime_utc '2024-10-27 22:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6N5F # _exptl.entry_id 6N5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(8-amino-8-oxooctyl)nonanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N5F _cell.length_a 51.005 _cell.length_b 77.903 _cell.length_c 88.196 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H34 N2 O2' _chem_comp.formula_weight 298.464 _chem_comp.id KJ1 _chem_comp.mon_nstd_flag . _chem_comp.name N-(8-amino-8-oxooctyl)nonanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 KJ1 sing 173 n n C02 C03 KJ1 sing 174 n n C03 C04 KJ1 sing 175 n n C04 C05 KJ1 sing 176 n n C05 C06 KJ1 sing 177 n n C06 C07 KJ1 sing 178 n n C07 C08 KJ1 sing 179 n n C08 C09 KJ1 sing 180 n n C09 O10 KJ1 doub 181 n n C09 N11 KJ1 sing 182 n n N11 C12 KJ1 sing 183 n n C13 C12 KJ1 sing 184 n n C13 C14 KJ1 sing 185 n n N20 C19 KJ1 sing 186 n n C14 C15 KJ1 sing 187 n n C16 C15 KJ1 sing 188 n n C16 C17 KJ1 sing 189 n n C19 O21 KJ1 doub 190 n n C19 C18 KJ1 sing 191 n n C18 C17 KJ1 sing 192 n n C13 H1 KJ1 sing 193 n n C13 H2 KJ1 sing 194 n n C15 H3 KJ1 sing 195 n n C15 H4 KJ1 sing 196 n n C17 H5 KJ1 sing 197 n n C01 H6 KJ1 sing 198 n n C01 H7 KJ1 sing 199 n n C01 H8 KJ1 sing 200 n n C02 H9 KJ1 sing 201 n n C02 H10 KJ1 sing 202 n n C03 H11 KJ1 sing 203 n n C03 H12 KJ1 sing 204 n n C04 H13 KJ1 sing 205 n n C04 H14 KJ1 sing 206 n n C05 H15 KJ1 sing 207 n n C05 H16 KJ1 sing 208 n n C06 H17 KJ1 sing 209 n n C06 H18 KJ1 sing 210 n n C07 H19 KJ1 sing 211 n n C07 H20 KJ1 sing 212 n n C08 H21 KJ1 sing 213 n n C08 H22 KJ1 sing 214 n n N11 H23 KJ1 sing 215 n n C12 H24 KJ1 sing 216 n n C12 H25 KJ1 sing 217 n n C14 H26 KJ1 sing 218 n n C14 H27 KJ1 sing 219 n n C16 H28 KJ1 sing 220 n n C18 H29 KJ1 sing 221 n n C18 H30 KJ1 sing 222 n n N20 H31 KJ1 sing 223 n n N20 H32 KJ1 sing 224 n n C17 H33 KJ1 sing 225 n n C16 H34 KJ1 sing 226 n n # _atom_sites.entry_id 6N5F _atom_sites.fract_transf_matrix[1][1] 0.019606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KJ1 A 1 401 1 KJ1 LIG . C 3 HOH A 1 501 124 HOH HOH . C 3 HOH A 2 502 180 HOH HOH . C 3 HOH A 3 503 35 HOH HOH . C 3 HOH A 4 504 60 HOH HOH . C 3 HOH A 5 505 90 HOH HOH . C 3 HOH A 6 506 63 HOH HOH . C 3 HOH A 7 507 134 HOH HOH . C 3 HOH A 8 508 25 HOH HOH . C 3 HOH A 9 509 5 HOH HOH . C 3 HOH A 10 510 140 HOH HOH . C 3 HOH A 11 511 43 HOH HOH . C 3 HOH A 12 512 82 HOH HOH . C 3 HOH A 13 513 109 HOH HOH . C 3 HOH A 14 514 203 HOH HOH . C 3 HOH A 15 515 166 HOH HOH . C 3 HOH A 16 516 75 HOH HOH . C 3 HOH A 17 517 71 HOH HOH . C 3 HOH A 18 518 64 HOH HOH . C 3 HOH A 19 519 21 HOH HOH . C 3 HOH A 20 520 19 HOH HOH . C 3 HOH A 21 521 216 HOH HOH . C 3 HOH A 22 522 114 HOH HOH . C 3 HOH A 23 523 39 HOH HOH . C 3 HOH A 24 524 56 HOH HOH . C 3 HOH A 25 525 78 HOH HOH . C 3 HOH A 26 526 195 HOH HOH . C 3 HOH A 27 527 107 HOH HOH . C 3 HOH A 28 528 2 HOH HOH . C 3 HOH A 29 529 127 HOH HOH . C 3 HOH A 30 530 141 HOH HOH . C 3 HOH A 31 531 192 HOH HOH . C 3 HOH A 32 532 47 HOH HOH . C 3 HOH A 33 533 128 HOH HOH . C 3 HOH A 34 534 106 HOH HOH . C 3 HOH A 35 535 24 HOH HOH . C 3 HOH A 36 536 165 HOH HOH . C 3 HOH A 37 537 112 HOH HOH . C 3 HOH A 38 538 20 HOH HOH . C 3 HOH A 39 539 79 HOH HOH . C 3 HOH A 40 540 131 HOH HOH . C 3 HOH A 41 541 14 HOH HOH . C 3 HOH A 42 542 121 HOH HOH . C 3 HOH A 43 543 6 HOH HOH . C 3 HOH A 44 544 228 HOH HOH . C 3 HOH A 45 545 73 HOH HOH . C 3 HOH A 46 546 91 HOH HOH . C 3 HOH A 47 547 13 HOH HOH . C 3 HOH A 48 548 161 HOH HOH . C 3 HOH A 49 549 27 HOH HOH . C 3 HOH A 50 550 72 HOH HOH . C 3 HOH A 51 551 81 HOH HOH . C 3 HOH A 52 552 117 HOH HOH . C 3 HOH A 53 553 52 HOH HOH . C 3 HOH A 54 554 3 HOH HOH . C 3 HOH A 55 555 87 HOH HOH . C 3 HOH A 56 556 16 HOH HOH . C 3 HOH A 57 557 77 HOH HOH . C 3 HOH A 58 558 1 HOH HOH . C 3 HOH A 59 559 41 HOH HOH . C 3 HOH A 60 560 38 HOH HOH . C 3 HOH A 61 561 4 HOH HOH . C 3 HOH A 62 562 155 HOH HOH . C 3 HOH A 63 563 48 HOH HOH . C 3 HOH A 64 564 29 HOH HOH . C 3 HOH A 65 565 10 HOH HOH . C 3 HOH A 66 566 151 HOH HOH . C 3 HOH A 67 567 40 HOH HOH . C 3 HOH A 68 568 120 HOH HOH . C 3 HOH A 69 569 15 HOH HOH . C 3 HOH A 70 570 45 HOH HOH . C 3 HOH A 71 571 37 HOH HOH . C 3 HOH A 72 572 147 HOH HOH . C 3 HOH A 73 573 95 HOH HOH . C 3 HOH A 74 574 7 HOH HOH . C 3 HOH A 75 575 194 HOH HOH . C 3 HOH A 76 576 116 HOH HOH . C 3 HOH A 77 577 100 HOH HOH . C 3 HOH A 78 578 164 HOH HOH . C 3 HOH A 79 579 233 HOH HOH . C 3 HOH A 80 580 62 HOH HOH . C 3 HOH A 81 581 67 HOH HOH . C 3 HOH A 82 582 46 HOH HOH . C 3 HOH A 83 583 34 HOH HOH . C 3 HOH A 84 584 103 HOH HOH . C 3 HOH A 85 585 181 HOH HOH . C 3 HOH A 86 586 104 HOH HOH . C 3 HOH A 87 587 196 HOH HOH . C 3 HOH A 88 588 23 HOH HOH . C 3 HOH A 89 589 171 HOH HOH . C 3 HOH A 90 590 66 HOH HOH . C 3 HOH A 91 591 33 HOH HOH . C 3 HOH A 92 592 42 HOH HOH . C 3 HOH A 93 593 18 HOH HOH . C 3 HOH A 94 594 17 HOH HOH . C 3 HOH A 95 595 113 HOH HOH . C 3 HOH A 96 596 54 HOH HOH . C 3 HOH A 97 597 26 HOH HOH . C 3 HOH A 98 598 135 HOH HOH . C 3 HOH A 99 599 22 HOH HOH . C 3 HOH A 100 600 188 HOH HOH . C 3 HOH A 101 601 28 HOH HOH . C 3 HOH A 102 602 176 HOH HOH . C 3 HOH A 103 603 130 HOH HOH . C 3 HOH A 104 604 8 HOH HOH . C 3 HOH A 105 605 30 HOH HOH . C 3 HOH A 106 606 32 HOH HOH . C 3 HOH A 107 607 55 HOH HOH . C 3 HOH A 108 608 61 HOH HOH . C 3 HOH A 109 609 74 HOH HOH . C 3 HOH A 110 610 220 HOH HOH . C 3 HOH A 111 611 11 HOH HOH . C 3 HOH A 112 612 218 HOH HOH . C 3 HOH A 113 613 83 HOH HOH . C 3 HOH A 114 614 173 HOH HOH . C 3 HOH A 115 615 208 HOH HOH . C 3 HOH A 116 616 59 HOH HOH . C 3 HOH A 117 617 156 HOH HOH . C 3 HOH A 118 618 133 HOH HOH . C 3 HOH A 119 619 146 HOH HOH . C 3 HOH A 120 620 108 HOH HOH . C 3 HOH A 121 621 150 HOH HOH . C 3 HOH A 122 622 183 HOH HOH . C 3 HOH A 123 623 187 HOH HOH . C 3 HOH A 124 624 84 HOH HOH . C 3 HOH A 125 625 102 HOH HOH . C 3 HOH A 126 626 51 HOH HOH . C 3 HOH A 127 627 50 HOH HOH . C 3 HOH A 128 628 122 HOH HOH . C 3 HOH A 129 629 93 HOH HOH . C 3 HOH A 130 630 12 HOH HOH . C 3 HOH A 131 631 96 HOH HOH . C 3 HOH A 132 632 229 HOH HOH . C 3 HOH A 133 633 136 HOH HOH . C 3 HOH A 134 634 190 HOH HOH . C 3 HOH A 135 635 44 HOH HOH . C 3 HOH A 136 636 97 HOH HOH . C 3 HOH A 137 637 70 HOH HOH . C 3 HOH A 138 638 99 HOH HOH . C 3 HOH A 139 639 139 HOH HOH . C 3 HOH A 140 640 129 HOH HOH . C 3 HOH A 141 641 170 HOH HOH . C 3 HOH A 142 642 69 HOH HOH . C 3 HOH A 143 643 119 HOH HOH . C 3 HOH A 144 644 174 HOH HOH . C 3 HOH A 145 645 85 HOH HOH . C 3 HOH A 146 646 210 HOH HOH . C 3 HOH A 147 647 9 HOH HOH . C 3 HOH A 148 648 223 HOH HOH . C 3 HOH A 149 649 198 HOH HOH . C 3 HOH A 150 650 126 HOH HOH . C 3 HOH A 151 651 154 HOH HOH . C 3 HOH A 152 652 153 HOH HOH . C 3 HOH A 153 653 31 HOH HOH . C 3 HOH A 154 654 36 HOH HOH . C 3 HOH A 155 655 185 HOH HOH . C 3 HOH A 156 656 178 HOH HOH . C 3 HOH A 157 657 189 HOH HOH . C 3 HOH A 158 658 125 HOH HOH . C 3 HOH A 159 659 143 HOH HOH . C 3 HOH A 160 660 145 HOH HOH . C 3 HOH A 161 661 169 HOH HOH . C 3 HOH A 162 662 49 HOH HOH . C 3 HOH A 163 663 132 HOH HOH . C 3 HOH A 164 664 58 HOH HOH . C 3 HOH A 165 665 110 HOH HOH . C 3 HOH A 166 666 98 HOH HOH . C 3 HOH A 167 667 137 HOH HOH . C 3 HOH A 168 668 123 HOH HOH . C 3 HOH A 169 669 68 HOH HOH . C 3 HOH A 170 670 80 HOH HOH . C 3 HOH A 171 671 205 HOH HOH . C 3 HOH A 172 672 65 HOH HOH . C 3 HOH A 173 673 159 HOH HOH . C 3 HOH A 174 674 138 HOH HOH . C 3 HOH A 175 675 207 HOH HOH . C 3 HOH A 176 676 201 HOH HOH . C 3 HOH A 177 677 88 HOH HOH . C 3 HOH A 178 678 76 HOH HOH . C 3 HOH A 179 679 89 HOH HOH . C 3 HOH A 180 680 212 HOH HOH . C 3 HOH A 181 681 148 HOH HOH . C 3 HOH A 182 682 206 HOH HOH . C 3 HOH A 183 683 111 HOH HOH . C 3 HOH A 184 684 86 HOH HOH . C 3 HOH A 185 685 115 HOH HOH . C 3 HOH A 186 686 144 HOH HOH . C 3 HOH A 187 687 118 HOH HOH . C 3 HOH A 188 688 172 HOH HOH . C 3 HOH A 189 689 211 HOH HOH . C 3 HOH A 190 690 225 HOH HOH . C 3 HOH A 191 691 167 HOH HOH . C 3 HOH A 192 692 177 HOH HOH . C 3 HOH A 193 693 214 HOH HOH . C 3 HOH A 194 694 213 HOH HOH . C 3 HOH A 195 695 53 HOH HOH . C 3 HOH A 196 696 197 HOH HOH . C 3 HOH A 197 697 219 HOH HOH . C 3 HOH A 198 698 158 HOH HOH . C 3 HOH A 199 699 209 HOH HOH . C 3 HOH A 200 700 57 HOH HOH . C 3 HOH A 201 701 105 HOH HOH . C 3 HOH A 202 702 94 HOH HOH . C 3 HOH A 203 703 142 HOH HOH . C 3 HOH A 204 704 202 HOH HOH . C 3 HOH A 205 705 226 HOH HOH . C 3 HOH A 206 706 230 HOH HOH . C 3 HOH A 207 707 175 HOH HOH . C 3 HOH A 208 708 179 HOH HOH . C 3 HOH A 209 709 149 HOH HOH . C 3 HOH A 210 710 191 HOH HOH . C 3 HOH A 211 711 215 HOH HOH . C 3 HOH A 212 712 193 HOH HOH . C 3 HOH A 213 713 101 HOH HOH . C 3 HOH A 214 714 182 HOH HOH . C 3 HOH A 215 715 152 HOH HOH . C 3 HOH A 216 716 199 HOH HOH . C 3 HOH A 217 717 160 HOH HOH . C 3 HOH A 218 718 222 HOH HOH . C 3 HOH A 219 719 224 HOH HOH . C 3 HOH A 220 720 162 HOH HOH . C 3 HOH A 221 721 186 HOH HOH . C 3 HOH A 222 722 204 HOH HOH . C 3 HOH A 223 723 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 KJ1 . . . B 2 9.804 7.178 20.495 1 24.83 ? C13 KJ1 401 A 1 HETATM 2 C C15 KJ1 . . . B 2 11.786 6.191 21.953 1 33.09 ? C15 KJ1 401 A 1 HETATM 3 C C17 KJ1 . . . B 2 13.3 4.342 23.195 1 34.59 ? C17 KJ1 401 A 1 HETATM 4 C C01 KJ1 . . . B 2 6.398 12.486 11.611 1 31.21 ? C01 KJ1 401 A 1 HETATM 5 C C02 KJ1 . . . B 2 4.975 12.316 12.173 1 28.4 ? C02 KJ1 401 A 1 HETATM 6 C C03 KJ1 . . . B 2 4.73 13.318 13.295 1 28.86 ? C03 KJ1 401 A 1 HETATM 7 C C04 KJ1 . . . B 2 5.795 13.173 14.384 1 29.22 ? C04 KJ1 401 A 1 HETATM 8 C C05 KJ1 . . . B 2 5.675 11.85 15.173 1 24.54 ? C05 KJ1 401 A 1 HETATM 9 C C06 KJ1 . . . B 2 6.716 11.844 16.302 1 23.31 ? C06 KJ1 401 A 1 HETATM 10 C C07 KJ1 . . . B 2 6.572 10.621 17.223 1 24.65 ? C07 KJ1 401 A 1 HETATM 11 C C08 KJ1 . . . B 2 7.409 10.869 18.466 1 22.17 ? C08 KJ1 401 A 1 HETATM 12 C C09 KJ1 . . . B 2 7.419 9.677 19.41 1 23.16 ? C09 KJ1 401 A 1 HETATM 13 O O10 KJ1 . . . B 2 6.422 9.034 19.605 1 24 ? O10 KJ1 401 A 1 HETATM 14 N N11 KJ1 . . . B 2 8.669 9.346 20.048 1 21.72 ? N11 KJ1 401 A 1 HETATM 15 C C12 KJ1 . . . B 2 8.769 8.204 20.982 1 20.39 ? C12 KJ1 401 A 1 HETATM 16 C C14 KJ1 . . . B 2 10.274 6.18 21.592 1 33.6 ? C14 KJ1 401 A 1 HETATM 17 C C16 KJ1 . . . B 2 12.49 4.788 21.949 1 36.31 ? C16 KJ1 401 A 1 HETATM 18 C C18 KJ1 . . . B 2 14.104 2.995 23.147 1 34.33 ? C18 KJ1 401 A 1 HETATM 19 C C19 KJ1 . . . B 2 15.53 3.2 22.603 1 41.71 ? C19 KJ1 401 A 1 HETATM 20 N N20 KJ1 . . . B 2 15.62 4 21.406 1 40.13 ? N20 KJ1 401 A 1 HETATM 21 O O21 KJ1 . . . B 2 16.549 2.729 23.081 1 45.02 ? O21 KJ1 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #