data_6N6D # _model_server_result.job_id x_BntlL6dlY-Cw7hOPW9NQ _model_server_result.datetime_utc '2024-10-18 17:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6N6D # _exptl.entry_id 6N6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6N6D _cell.length_a 89.734 _cell.length_b 89.734 _cell.length_c 59.485 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 12 A ASP 12 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 D O HOH . A HOH 217 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 D O HOH . A HOH 249 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc4 B O3' A 1 D A 603 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc5 B OP1 G 2 D G 604 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 C NA NA . D NA 701 1_555 E O HOH . D HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N6D _atom_sites.fract_transf_matrix[1][1] 0.011144 _atom_sites.fract_transf_matrix[1][2] 0.006434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA D 1 701 1 NA NA . D 4 HOH A 1 201 303 HOH HOH . D 4 HOH A 2 202 237 HOH HOH . D 4 HOH A 3 203 238 HOH HOH . D 4 HOH A 4 204 156 HOH HOH . D 4 HOH A 5 205 187 HOH HOH . D 4 HOH A 6 206 299 HOH HOH . D 4 HOH A 7 207 292 HOH HOH . D 4 HOH A 8 208 220 HOH HOH . D 4 HOH A 9 209 131 HOH HOH . D 4 HOH A 10 210 119 HOH HOH . D 4 HOH A 11 211 65 HOH HOH . D 4 HOH A 12 212 78 HOH HOH . D 4 HOH A 13 213 146 HOH HOH . D 4 HOH A 14 214 177 HOH HOH . D 4 HOH A 15 215 42 HOH HOH . D 4 HOH A 16 216 160 HOH HOH . D 4 HOH A 17 217 3 HOH HOH . D 4 HOH A 18 218 267 HOH HOH . D 4 HOH A 19 219 28 HOH HOH . D 4 HOH A 20 220 15 HOH HOH . D 4 HOH A 21 221 139 HOH HOH . D 4 HOH A 22 222 97 HOH HOH . D 4 HOH A 23 223 141 HOH HOH . D 4 HOH A 24 224 109 HOH HOH . D 4 HOH A 25 225 66 HOH HOH . D 4 HOH A 26 226 108 HOH HOH . D 4 HOH A 27 227 144 HOH HOH . D 4 HOH A 28 228 251 HOH HOH . D 4 HOH A 29 229 67 HOH HOH . D 4 HOH A 30 230 198 HOH HOH . D 4 HOH A 31 231 151 HOH HOH . D 4 HOH A 32 232 23 HOH HOH . D 4 HOH A 33 233 68 HOH HOH . D 4 HOH A 34 234 41 HOH HOH . D 4 HOH A 35 235 116 HOH HOH . D 4 HOH A 36 236 27 HOH HOH . D 4 HOH A 37 237 129 HOH HOH . D 4 HOH A 38 238 81 HOH HOH . D 4 HOH A 39 239 136 HOH HOH . D 4 HOH A 40 240 14 HOH HOH . D 4 HOH A 41 241 270 HOH HOH . D 4 HOH A 42 242 217 HOH HOH . D 4 HOH A 43 243 83 HOH HOH . D 4 HOH A 44 244 31 HOH HOH . D 4 HOH A 45 245 130 HOH HOH . D 4 HOH A 46 246 22 HOH HOH . D 4 HOH A 47 247 104 HOH HOH . D 4 HOH A 48 248 121 HOH HOH . D 4 HOH A 49 249 1 HOH HOH . D 4 HOH A 50 250 118 HOH HOH . D 4 HOH A 51 251 140 HOH HOH . D 4 HOH A 52 252 63 HOH HOH . D 4 HOH A 53 253 37 HOH HOH . D 4 HOH A 54 254 191 HOH HOH . D 4 HOH A 55 255 125 HOH HOH . D 4 HOH A 56 256 60 HOH HOH . D 4 HOH A 57 257 143 HOH HOH . D 4 HOH A 58 258 232 HOH HOH . D 4 HOH A 59 259 89 HOH HOH . D 4 HOH A 60 260 161 HOH HOH . D 4 HOH A 61 261 33 HOH HOH . D 4 HOH A 62 262 88 HOH HOH . D 4 HOH A 63 263 74 HOH HOH . D 4 HOH A 64 264 94 HOH HOH . D 4 HOH A 65 265 287 HOH HOH . D 4 HOH A 66 266 181 HOH HOH . D 4 HOH A 67 267 87 HOH HOH . D 4 HOH A 68 268 184 HOH HOH . D 4 HOH A 69 269 51 HOH HOH . D 4 HOH A 70 270 273 HOH HOH . D 4 HOH A 71 271 80 HOH HOH . D 4 HOH A 72 272 202 HOH HOH . D 4 HOH A 73 273 100 HOH HOH . D 4 HOH A 74 274 224 HOH HOH . D 4 HOH A 75 275 86 HOH HOH . D 4 HOH A 76 276 128 HOH HOH . D 4 HOH A 77 277 57 HOH HOH . D 4 HOH A 78 278 18 HOH HOH . D 4 HOH A 79 279 30 HOH HOH . D 4 HOH A 80 280 26 HOH HOH . D 4 HOH A 81 281 102 HOH HOH . D 4 HOH A 82 282 114 HOH HOH . D 4 HOH A 83 283 148 HOH HOH . D 4 HOH A 84 284 48 HOH HOH . D 4 HOH A 85 285 275 HOH HOH . D 4 HOH A 86 286 52 HOH HOH . D 4 HOH A 87 287 24 HOH HOH . D 4 HOH A 88 288 35 HOH HOH . D 4 HOH A 89 289 77 HOH HOH . D 4 HOH A 90 290 101 HOH HOH . D 4 HOH A 91 291 21 HOH HOH . D 4 HOH A 92 292 59 HOH HOH . D 4 HOH A 93 293 235 HOH HOH . D 4 HOH A 94 294 34 HOH HOH . D 4 HOH A 95 295 36 HOH HOH . D 4 HOH A 96 296 8 HOH HOH . D 4 HOH A 97 297 258 HOH HOH . D 4 HOH A 98 298 75 HOH HOH . D 4 HOH A 99 299 49 HOH HOH . D 4 HOH A 100 300 84 HOH HOH . D 4 HOH A 101 301 91 HOH HOH . D 4 HOH A 102 302 262 HOH HOH . D 4 HOH A 103 303 79 HOH HOH . D 4 HOH A 104 304 234 HOH HOH . D 4 HOH A 105 305 29 HOH HOH . D 4 HOH A 106 306 145 HOH HOH . D 4 HOH A 107 307 56 HOH HOH . D 4 HOH A 108 308 46 HOH HOH . D 4 HOH A 109 309 127 HOH HOH . D 4 HOH A 110 310 233 HOH HOH . D 4 HOH A 111 311 165 HOH HOH . D 4 HOH A 112 312 192 HOH HOH . D 4 HOH A 113 313 212 HOH HOH . D 4 HOH A 114 314 69 HOH HOH . D 4 HOH A 115 315 7 HOH HOH . D 4 HOH A 116 316 16 HOH HOH . D 4 HOH A 117 317 167 HOH HOH . D 4 HOH A 118 318 70 HOH HOH . D 4 HOH A 119 319 73 HOH HOH . D 4 HOH A 120 320 5 HOH HOH . D 4 HOH A 121 321 152 HOH HOH . D 4 HOH A 122 322 134 HOH HOH . D 4 HOH A 123 323 47 HOH HOH . D 4 HOH A 124 324 169 HOH HOH . D 4 HOH A 125 325 53 HOH HOH . D 4 HOH A 126 326 142 HOH HOH . D 4 HOH A 127 327 17 HOH HOH . D 4 HOH A 128 328 54 HOH HOH . D 4 HOH A 129 329 25 HOH HOH . D 4 HOH A 130 330 40 HOH HOH . D 4 HOH A 131 331 72 HOH HOH . D 4 HOH A 132 332 246 HOH HOH . D 4 HOH A 133 333 58 HOH HOH . D 4 HOH A 134 334 153 HOH HOH . D 4 HOH A 135 335 176 HOH HOH . D 4 HOH A 136 336 206 HOH HOH . D 4 HOH A 137 337 44 HOH HOH . D 4 HOH A 138 338 296 HOH HOH . D 4 HOH A 139 339 43 HOH HOH . D 4 HOH A 140 340 120 HOH HOH . D 4 HOH A 141 341 95 HOH HOH . D 4 HOH A 142 342 282 HOH HOH . D 4 HOH A 143 343 124 HOH HOH . D 4 HOH A 144 344 4 HOH HOH . D 4 HOH A 145 345 38 HOH HOH . D 4 HOH A 146 346 135 HOH HOH . D 4 HOH A 147 347 268 HOH HOH . D 4 HOH A 148 348 138 HOH HOH . D 4 HOH A 149 349 92 HOH HOH . D 4 HOH A 150 350 256 HOH HOH . D 4 HOH A 151 351 113 HOH HOH . D 4 HOH A 152 352 293 HOH HOH . D 4 HOH A 153 353 50 HOH HOH . D 4 HOH A 154 354 209 HOH HOH . D 4 HOH A 155 355 55 HOH HOH . D 4 HOH A 156 356 196 HOH HOH . D 4 HOH A 157 357 76 HOH HOH . D 4 HOH A 158 358 99 HOH HOH . D 4 HOH A 159 359 174 HOH HOH . D 4 HOH A 160 360 115 HOH HOH . D 4 HOH A 161 361 231 HOH HOH . D 4 HOH A 162 362 133 HOH HOH . D 4 HOH A 163 363 225 HOH HOH . D 4 HOH A 164 364 216 HOH HOH . D 4 HOH A 165 365 180 HOH HOH . D 4 HOH A 166 366 71 HOH HOH . D 4 HOH A 167 367 105 HOH HOH . D 4 HOH A 168 368 39 HOH HOH . D 4 HOH A 169 369 269 HOH HOH . D 4 HOH A 170 370 13 HOH HOH . D 4 HOH A 171 371 32 HOH HOH . D 4 HOH A 172 372 211 HOH HOH . D 4 HOH A 173 373 300 HOH HOH . D 4 HOH A 174 374 215 HOH HOH . D 4 HOH A 175 375 126 HOH HOH . D 4 HOH A 176 376 195 HOH HOH . D 4 HOH A 177 377 203 HOH HOH . D 4 HOH A 178 378 208 HOH HOH . D 4 HOH A 179 379 266 HOH HOH . D 4 HOH A 180 380 182 HOH HOH . D 4 HOH A 181 381 204 HOH HOH . D 4 HOH A 182 382 45 HOH HOH . D 4 HOH A 183 383 241 HOH HOH . D 4 HOH A 184 384 157 HOH HOH . D 4 HOH A 185 385 290 HOH HOH . D 4 HOH A 186 386 103 HOH HOH . D 4 HOH A 187 387 154 HOH HOH . D 4 HOH A 188 388 193 HOH HOH . D 4 HOH A 189 389 284 HOH HOH . D 4 HOH A 190 390 278 HOH HOH . D 4 HOH A 191 391 264 HOH HOH . D 4 HOH A 192 392 305 HOH HOH . D 4 HOH A 193 393 197 HOH HOH . D 4 HOH A 194 394 250 HOH HOH . D 4 HOH A 195 395 255 HOH HOH . D 4 HOH A 196 396 207 HOH HOH . D 4 HOH A 197 397 213 HOH HOH . D 4 HOH A 198 398 283 HOH HOH . D 4 HOH A 199 399 150 HOH HOH . D 4 HOH A 200 400 229 HOH HOH . D 4 HOH A 201 401 122 HOH HOH . D 4 HOH A 202 402 301 HOH HOH . D 4 HOH A 203 403 240 HOH HOH . D 4 HOH A 204 404 166 HOH HOH . D 4 HOH A 205 405 137 HOH HOH . D 4 HOH A 206 406 261 HOH HOH . D 4 HOH A 207 407 85 HOH HOH . D 4 HOH A 208 408 304 HOH HOH . D 4 HOH A 209 409 199 HOH HOH . D 4 HOH A 210 410 254 HOH HOH . D 4 HOH A 211 411 272 HOH HOH . D 4 HOH A 212 412 171 HOH HOH . D 4 HOH A 213 413 218 HOH HOH . D 4 HOH A 214 414 158 HOH HOH . D 4 HOH A 215 415 194 HOH HOH . D 4 HOH A 216 416 308 HOH HOH . D 4 HOH A 217 417 263 HOH HOH . D 4 HOH A 218 418 200 HOH HOH . D 4 HOH A 219 419 236 HOH HOH . D 4 HOH A 220 420 190 HOH HOH . D 4 HOH A 221 421 247 HOH HOH . D 4 HOH A 222 422 90 HOH HOH . D 4 HOH A 223 423 230 HOH HOH . D 4 HOH A 224 424 214 HOH HOH . D 4 HOH A 225 425 183 HOH HOH . D 4 HOH A 226 426 281 HOH HOH . D 4 HOH A 227 427 253 HOH HOH . D 4 HOH A 228 428 248 HOH HOH . D 4 HOH A 229 429 9 HOH HOH . D 4 HOH A 230 430 228 HOH HOH . D 4 HOH A 231 431 178 HOH HOH . D 4 HOH A 232 432 112 HOH HOH . D 4 HOH A 233 433 164 HOH HOH . D 4 HOH A 234 434 96 HOH HOH . D 4 HOH A 235 435 106 HOH HOH . D 4 HOH A 236 436 111 HOH HOH . D 4 HOH A 237 437 107 HOH HOH . D 4 HOH A 238 438 163 HOH HOH . D 4 HOH A 239 439 222 HOH HOH . D 4 HOH A 240 440 162 HOH HOH . D 4 HOH A 241 441 98 HOH HOH . D 4 HOH A 242 442 242 HOH HOH . D 4 HOH A 243 443 172 HOH HOH . D 4 HOH A 244 444 175 HOH HOH . D 4 HOH A 245 445 260 HOH HOH . D 4 HOH A 246 446 291 HOH HOH . D 4 HOH A 247 447 257 HOH HOH . D 4 HOH A 248 448 243 HOH HOH . D 4 HOH A 249 449 221 HOH HOH . D 4 HOH A 250 450 286 HOH HOH . D 4 HOH A 251 451 297 HOH HOH . D 4 HOH A 252 452 201 HOH HOH . D 4 HOH A 253 453 155 HOH HOH . D 4 HOH A 254 454 64 HOH HOH . D 4 HOH A 255 455 93 HOH HOH . D 4 HOH A 256 456 173 HOH HOH . D 4 HOH A 257 457 170 HOH HOH . D 4 HOH A 258 458 149 HOH HOH . D 4 HOH A 259 459 279 HOH HOH . D 4 HOH A 260 460 302 HOH HOH . D 4 HOH A 261 461 307 HOH HOH . D 4 HOH A 262 462 61 HOH HOH . D 4 HOH A 263 463 110 HOH HOH . D 4 HOH A 264 464 82 HOH HOH . D 4 HOH A 265 465 186 HOH HOH . D 4 HOH A 266 466 294 HOH HOH . D 4 HOH A 267 467 280 HOH HOH . D 4 HOH A 268 468 132 HOH HOH . D 4 HOH A 269 469 147 HOH HOH . D 4 HOH A 270 470 289 HOH HOH . D 4 HOH A 271 471 306 HOH HOH . D 4 HOH A 272 472 285 HOH HOH . D 4 HOH A 273 473 62 HOH HOH . D 4 HOH A 274 474 252 HOH HOH . D 4 HOH A 275 475 259 HOH HOH . D 4 HOH A 276 476 185 HOH HOH . D 4 HOH A 277 477 219 HOH HOH . D 4 HOH A 278 478 276 HOH HOH . D 4 HOH A 279 479 159 HOH HOH . D 4 HOH A 280 480 244 HOH HOH . D 4 HOH A 281 481 271 HOH HOH . D 4 HOH A 282 482 274 HOH HOH . D 4 HOH A 283 483 249 HOH HOH . D 4 HOH A 284 484 295 HOH HOH . D 4 HOH A 285 485 189 HOH HOH . D 4 HOH A 286 486 210 HOH HOH . D 4 HOH A 287 487 179 HOH HOH . E 4 HOH D 1 801 20 HOH HOH . E 4 HOH D 2 802 10 HOH HOH . E 4 HOH D 3 803 11 HOH HOH . E 4 HOH D 4 804 205 HOH HOH . E 4 HOH D 5 805 6 HOH HOH . E 4 HOH D 6 806 239 HOH HOH . E 4 HOH D 7 807 223 HOH HOH . E 4 HOH D 8 808 226 HOH HOH . E 4 HOH D 9 809 123 HOH HOH . E 4 HOH D 10 810 117 HOH HOH . E 4 HOH D 11 811 298 HOH HOH . E 4 HOH D 12 812 2 HOH HOH . E 4 HOH D 13 813 265 HOH HOH . E 4 HOH D 14 814 188 HOH HOH . E 4 HOH D 15 815 12 HOH HOH . E 4 HOH D 16 816 168 HOH HOH . E 4 HOH D 17 817 227 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -41.831 _atom_site.Cartn_y 11.676 _atom_site.Cartn_z 7.043 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #