data_6N6F # _model_server_result.job_id X5a6mtn55j4e_l4raQpWbQ _model_server_result.datetime_utc '2024-12-23 16:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6N6F # _exptl.entry_id 6N6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6N6F _cell.length_a 88.715 _cell.length_b 88.715 _cell.length_c 59.78 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 12 A ASP 12 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 D O HOH . A HOH 212 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 D O HOH . A HOH 257 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 B O3' G 1 D G 603 1_555 C NA NA . D NA 701 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc5 B O3' G 1 D G 603 1_555 C NA NA . D NA 701 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc6 B OP1 C 2 D C 604 1_555 C NA NA . D NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 C NA NA . D NA 701 1_555 E O HOH . D HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N6F _atom_sites.fract_transf_matrix[1][1] 0.011272 _atom_sites.fract_transf_matrix[1][2] 0.006508 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA D 1 701 1 NA NA . D 4 HOH A 1 201 222 HOH HOH . D 4 HOH A 2 202 75 HOH HOH . D 4 HOH A 3 203 66 HOH HOH . D 4 HOH A 4 204 209 HOH HOH . D 4 HOH A 5 205 104 HOH HOH . D 4 HOH A 6 206 64 HOH HOH . D 4 HOH A 7 207 39 HOH HOH . D 4 HOH A 8 208 194 HOH HOH . D 4 HOH A 9 209 103 HOH HOH . D 4 HOH A 10 210 13 HOH HOH . D 4 HOH A 11 211 61 HOH HOH . D 4 HOH A 12 212 3 HOH HOH . D 4 HOH A 13 213 125 HOH HOH . D 4 HOH A 14 214 24 HOH HOH . D 4 HOH A 15 215 65 HOH HOH . D 4 HOH A 16 216 122 HOH HOH . D 4 HOH A 17 217 25 HOH HOH . D 4 HOH A 18 218 49 HOH HOH . D 4 HOH A 19 219 146 HOH HOH . D 4 HOH A 20 220 21 HOH HOH . D 4 HOH A 21 221 112 HOH HOH . D 4 HOH A 22 222 28 HOH HOH . D 4 HOH A 23 223 63 HOH HOH . D 4 HOH A 24 224 127 HOH HOH . D 4 HOH A 25 225 20 HOH HOH . D 4 HOH A 26 226 78 HOH HOH . D 4 HOH A 27 227 94 HOH HOH . D 4 HOH A 28 228 97 HOH HOH . D 4 HOH A 29 229 184 HOH HOH . D 4 HOH A 30 230 54 HOH HOH . D 4 HOH A 31 231 137 HOH HOH . D 4 HOH A 32 232 99 HOH HOH . D 4 HOH A 33 233 84 HOH HOH . D 4 HOH A 34 234 158 HOH HOH . D 4 HOH A 35 235 48 HOH HOH . D 4 HOH A 36 236 19 HOH HOH . D 4 HOH A 37 237 110 HOH HOH . D 4 HOH A 38 238 83 HOH HOH . D 4 HOH A 39 239 80 HOH HOH . D 4 HOH A 40 240 88 HOH HOH . D 4 HOH A 41 241 57 HOH HOH . D 4 HOH A 42 242 30 HOH HOH . D 4 HOH A 43 243 71 HOH HOH . D 4 HOH A 44 244 177 HOH HOH . D 4 HOH A 45 245 58 HOH HOH . D 4 HOH A 46 246 55 HOH HOH . D 4 HOH A 47 247 23 HOH HOH . D 4 HOH A 48 248 74 HOH HOH . D 4 HOH A 49 249 130 HOH HOH . D 4 HOH A 50 250 33 HOH HOH . D 4 HOH A 51 251 213 HOH HOH . D 4 HOH A 52 252 164 HOH HOH . D 4 HOH A 53 253 86 HOH HOH . D 4 HOH A 54 254 46 HOH HOH . D 4 HOH A 55 255 77 HOH HOH . D 4 HOH A 56 256 121 HOH HOH . D 4 HOH A 57 257 1 HOH HOH . D 4 HOH A 58 258 27 HOH HOH . D 4 HOH A 59 259 91 HOH HOH . D 4 HOH A 60 260 16 HOH HOH . D 4 HOH A 61 261 43 HOH HOH . D 4 HOH A 62 262 26 HOH HOH . D 4 HOH A 63 263 38 HOH HOH . D 4 HOH A 64 264 117 HOH HOH . D 4 HOH A 65 265 182 HOH HOH . D 4 HOH A 66 266 98 HOH HOH . D 4 HOH A 67 267 167 HOH HOH . D 4 HOH A 68 268 85 HOH HOH . D 4 HOH A 69 269 76 HOH HOH . D 4 HOH A 70 270 129 HOH HOH . D 4 HOH A 71 271 68 HOH HOH . D 4 HOH A 72 272 14 HOH HOH . D 4 HOH A 73 273 221 HOH HOH . D 4 HOH A 74 274 34 HOH HOH . D 4 HOH A 75 275 156 HOH HOH . D 4 HOH A 76 276 31 HOH HOH . D 4 HOH A 77 277 18 HOH HOH . D 4 HOH A 78 278 32 HOH HOH . D 4 HOH A 79 279 166 HOH HOH . D 4 HOH A 80 280 73 HOH HOH . D 4 HOH A 81 281 7 HOH HOH . D 4 HOH A 82 282 132 HOH HOH . D 4 HOH A 83 283 124 HOH HOH . D 4 HOH A 84 284 45 HOH HOH . D 4 HOH A 85 285 81 HOH HOH . D 4 HOH A 86 286 195 HOH HOH . D 4 HOH A 87 287 72 HOH HOH . D 4 HOH A 88 288 22 HOH HOH . D 4 HOH A 89 289 181 HOH HOH . D 4 HOH A 90 290 139 HOH HOH . D 4 HOH A 91 291 193 HOH HOH . D 4 HOH A 92 292 160 HOH HOH . D 4 HOH A 93 293 118 HOH HOH . D 4 HOH A 94 294 92 HOH HOH . D 4 HOH A 95 295 138 HOH HOH . D 4 HOH A 96 296 4 HOH HOH . D 4 HOH A 97 297 169 HOH HOH . D 4 HOH A 98 298 15 HOH HOH . D 4 HOH A 99 299 107 HOH HOH . D 4 HOH A 100 300 149 HOH HOH . D 4 HOH A 101 301 44 HOH HOH . D 4 HOH A 102 302 37 HOH HOH . D 4 HOH A 103 303 108 HOH HOH . D 4 HOH A 104 304 50 HOH HOH . D 4 HOH A 105 305 41 HOH HOH . D 4 HOH A 106 306 51 HOH HOH . D 4 HOH A 107 307 5 HOH HOH . D 4 HOH A 108 308 36 HOH HOH . D 4 HOH A 109 309 47 HOH HOH . D 4 HOH A 110 310 89 HOH HOH . D 4 HOH A 111 311 180 HOH HOH . D 4 HOH A 112 312 155 HOH HOH . D 4 HOH A 113 313 29 HOH HOH . D 4 HOH A 114 314 8 HOH HOH . D 4 HOH A 115 315 52 HOH HOH . D 4 HOH A 116 316 40 HOH HOH . D 4 HOH A 117 317 126 HOH HOH . D 4 HOH A 118 318 35 HOH HOH . D 4 HOH A 119 319 113 HOH HOH . D 4 HOH A 120 320 226 HOH HOH . D 4 HOH A 121 321 131 HOH HOH . D 4 HOH A 122 322 185 HOH HOH . D 4 HOH A 123 323 70 HOH HOH . D 4 HOH A 124 324 145 HOH HOH . D 4 HOH A 125 325 153 HOH HOH . D 4 HOH A 126 326 56 HOH HOH . D 4 HOH A 127 327 109 HOH HOH . D 4 HOH A 128 328 42 HOH HOH . D 4 HOH A 129 329 173 HOH HOH . D 4 HOH A 130 330 100 HOH HOH . D 4 HOH A 131 331 175 HOH HOH . D 4 HOH A 132 332 69 HOH HOH . D 4 HOH A 133 333 96 HOH HOH . D 4 HOH A 134 334 211 HOH HOH . D 4 HOH A 135 335 214 HOH HOH . D 4 HOH A 136 336 154 HOH HOH . D 4 HOH A 137 337 128 HOH HOH . D 4 HOH A 138 338 152 HOH HOH . D 4 HOH A 139 339 216 HOH HOH . D 4 HOH A 140 340 120 HOH HOH . D 4 HOH A 141 341 67 HOH HOH . D 4 HOH A 142 342 133 HOH HOH . D 4 HOH A 143 343 12 HOH HOH . D 4 HOH A 144 344 223 HOH HOH . D 4 HOH A 145 345 165 HOH HOH . D 4 HOH A 146 346 200 HOH HOH . D 4 HOH A 147 347 190 HOH HOH . D 4 HOH A 148 348 163 HOH HOH . D 4 HOH A 149 349 225 HOH HOH . D 4 HOH A 150 350 183 HOH HOH . D 4 HOH A 151 351 174 HOH HOH . D 4 HOH A 152 352 147 HOH HOH . D 4 HOH A 153 353 212 HOH HOH . D 4 HOH A 154 354 116 HOH HOH . D 4 HOH A 155 355 191 HOH HOH . D 4 HOH A 156 356 208 HOH HOH . D 4 HOH A 157 357 114 HOH HOH . D 4 HOH A 158 358 123 HOH HOH . D 4 HOH A 159 359 210 HOH HOH . D 4 HOH A 160 360 162 HOH HOH . D 4 HOH A 161 361 220 HOH HOH . D 4 HOH A 162 362 178 HOH HOH . D 4 HOH A 163 363 144 HOH HOH . D 4 HOH A 164 364 136 HOH HOH . D 4 HOH A 165 365 219 HOH HOH . D 4 HOH A 166 366 151 HOH HOH . D 4 HOH A 167 367 101 HOH HOH . D 4 HOH A 168 368 148 HOH HOH . D 4 HOH A 169 369 82 HOH HOH . D 4 HOH A 170 370 141 HOH HOH . D 4 HOH A 171 371 197 HOH HOH . D 4 HOH A 172 372 87 HOH HOH . D 4 HOH A 173 373 157 HOH HOH . D 4 HOH A 174 374 218 HOH HOH . D 4 HOH A 175 375 188 HOH HOH . D 4 HOH A 176 376 106 HOH HOH . D 4 HOH A 177 377 102 HOH HOH . D 4 HOH A 178 378 227 HOH HOH . D 4 HOH A 179 379 143 HOH HOH . D 4 HOH A 180 380 199 HOH HOH . D 4 HOH A 181 381 93 HOH HOH . D 4 HOH A 182 382 187 HOH HOH . D 4 HOH A 183 383 207 HOH HOH . D 4 HOH A 184 384 224 HOH HOH . D 4 HOH A 185 385 203 HOH HOH . D 4 HOH A 186 386 95 HOH HOH . D 4 HOH A 187 387 192 HOH HOH . D 4 HOH A 188 388 135 HOH HOH . D 4 HOH A 189 389 79 HOH HOH . D 4 HOH A 190 390 62 HOH HOH . D 4 HOH A 191 391 170 HOH HOH . D 4 HOH A 192 392 119 HOH HOH . D 4 HOH A 193 393 206 HOH HOH . D 4 HOH A 194 394 59 HOH HOH . D 4 HOH A 195 395 204 HOH HOH . D 4 HOH A 196 396 179 HOH HOH . D 4 HOH A 197 397 105 HOH HOH . D 4 HOH A 198 398 196 HOH HOH . D 4 HOH A 199 399 90 HOH HOH . D 4 HOH A 200 400 134 HOH HOH . D 4 HOH A 201 401 60 HOH HOH . D 4 HOH A 202 402 168 HOH HOH . D 4 HOH A 203 403 189 HOH HOH . D 4 HOH A 204 404 202 HOH HOH . D 4 HOH A 205 405 205 HOH HOH . D 4 HOH A 206 406 150 HOH HOH . E 4 HOH D 1 801 111 HOH HOH . E 4 HOH D 2 802 17 HOH HOH . E 4 HOH D 3 803 186 HOH HOH . E 4 HOH D 4 804 9 HOH HOH . E 4 HOH D 5 805 6 HOH HOH . E 4 HOH D 6 806 159 HOH HOH . E 4 HOH D 7 807 115 HOH HOH . E 4 HOH D 8 808 53 HOH HOH . E 4 HOH D 9 809 201 HOH HOH . E 4 HOH D 10 810 10 HOH HOH . E 4 HOH D 11 811 142 HOH HOH . E 4 HOH D 12 812 172 HOH HOH . E 4 HOH D 13 813 2 HOH HOH . E 4 HOH D 14 814 198 HOH HOH . E 4 HOH D 15 815 176 HOH HOH . E 4 HOH D 16 816 171 HOH HOH . E 4 HOH D 17 817 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -41.638 _atom_site.Cartn_y 11.586 _atom_site.Cartn_z 6.875 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #