data_6N6X # _model_server_result.job_id D68F_Z0Q4k1QYzILweFbsw _model_server_result.datetime_utc '2024-11-14 03:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6N6X # _exptl.entry_id 6N6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Imipenem _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N6X _cell.length_a 174.851 _cell.length_b 174.851 _cell.length_c 81.297 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 45 A SER 79 1_555 B C7 ID1 . A ID1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A C PHE 47 A PHE 81 1_555 A N KCX 48 A KCX 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C KCX 48 A KCX 82 1_555 A N MET 49 A MET 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C12 H19 N3 O4 S' _chem_comp.formula_weight 301.362 _chem_comp.id ID1 _chem_comp.mon_nstd_flag . _chem_comp.name Imipenem _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C31 ID1 doub 137 n n C31 O32 ID1 sing 138 n n C31 C3 ID1 sing 139 n n C7 C6 ID1 sing 140 n n C7 O7 ID1 doub 141 n n C3 N4 ID1 doub 142 n n C3 C2 ID1 sing 143 n n N4 C5 ID1 sing 144 n n S21 C2 ID1 sing 145 n n S21 C22 ID1 sing 146 n n C6 C5 ID1 sing 147 n n C6 C61 ID1 sing 148 n n C62 C61 ID1 sing 149 n n C2 C1 ID1 sing 150 n n C5 C1 ID1 sing 151 n n C61 O62 ID1 sing 152 n n C22 C23 ID1 sing 153 n n N24 C23 ID1 sing 154 n n N24 C25 ID1 doub 155 n n C25 N26 ID1 sing 156 n n C7 H1 ID1 sing 157 n n C2 H2 ID1 sing 158 n n C6 H3 ID1 sing 159 n n C5 H4 ID1 sing 160 n n C61 H6 ID1 sing 161 n n O62 H7 ID1 sing 162 n n C62 H8 ID1 sing 163 n n C62 H9 ID1 sing 164 n n C62 H10 ID1 sing 165 n n O32 H13 ID1 sing 166 n n C22 H14 ID1 sing 167 n n C22 H15 ID1 sing 168 n n C23 H16 ID1 sing 169 n n C23 H17 ID1 sing 170 n n C25 H18 ID1 sing 171 n n N26 H19 ID1 sing 172 n n N26 H20 ID1 sing 173 n n C1 H21 ID1 sing 174 n n C1 H22 ID1 sing 175 n n # _atom_sites.entry_id 6N6X _atom_sites.fract_transf_matrix[1][1] 0.005719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ID1 A 1 301 301 ID1 ID1 . C 3 SO4 A 1 302 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 ID1 . . . B 2 -39.266 23.107 12.288 1 85.18 ? C7 ID1 301 A 1 HETATM 2 C C2 ID1 . . . B 2 -39.033 25.137 16.122 1 115.06 ? C2 ID1 301 A 1 HETATM 3 C C6 ID1 . . . B 2 -39.043 24.489 12.92 1 92.98 ? C6 ID1 301 A 1 HETATM 4 C C5 ID1 . . . B 2 -37.996 24.342 14.04 1 104.45 ? C5 ID1 301 A 1 HETATM 5 C C3 ID1 . . . B 2 -39.343 23.712 15.766 1 115.04 ? C3 ID1 301 A 1 HETATM 6 O O7 ID1 . . . B 2 -40.332 22.823 11.749 1 79.81 ? O7 ID1 301 A 1 HETATM 7 C C61 ID1 . . . B 2 -38.738 25.489 11.788 1 92.12 ? C61 ID1 301 A 1 HETATM 8 O O62 ID1 . . . B 2 -38.374 24.751 10.615 1 85.91 ? O62 ID1 301 A 1 HETATM 9 C C62 ID1 . . . B 2 -37.654 26.543 12.044 1 102.69 ? C62 ID1 301 A 1 HETATM 10 N N4 ID1 . . . B 2 -38.624 23.291 14.823 1 109.96 ? N4 ID1 301 A 1 HETATM 11 C C31 ID1 . . . B 2 -40.359 22.827 16.353 1 117.21 ? C31 ID1 301 A 1 HETATM 12 O O31 ID1 . . . B 2 -41.38 22.55 15.675 1 113.4 ? O31 ID1 301 A 1 HETATM 13 O O32 ID1 . . . B 2 -40.176 22.354 17.501 1 118.69 ? O32 ID1 301 A 1 HETATM 14 S S21 ID1 . . . B 2 -40.337 26.281 15.786 1 114.87 ? S21 ID1 301 A 1 HETATM 15 C C22 ID1 . . . B 2 -40.141 27.727 16.766 1 103.33 ? C22 ID1 301 A 1 HETATM 16 C C23 ID1 . . . B 2 -40.894 28.833 16.041 1 100.06 ? C23 ID1 301 A 1 HETATM 17 N N24 ID1 . . . B 2 -42.093 29.188 16.764 1 105.33 ? N24 ID1 301 A 1 HETATM 18 C C25 ID1 . . . B 2 -42.155 29.019 18.087 1 111.85 ? C25 ID1 301 A 1 HETATM 19 N N26 ID1 . . . B 2 -43.092 29.573 18.747 1 113.22 ? N26 ID1 301 A 1 HETATM 20 C C1 ID1 . . . B 2 -37.927 25.434 15.126 1 110.6 ? C1 ID1 301 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #