data_6N6Y # _model_server_result.job_id hmbkMWN1pdYVNvyZwbSGKg _model_server_result.datetime_utc '2024-11-15 09:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6N6Y # _exptl.entry_id 6N6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'meropenem,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N6Y _cell.length_a 175.242 _cell.length_b 175.242 _cell.length_c 81.18 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 45 A SER 79 1_555 B C7 KE1 . A KE1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 A C PHE 47 A PHE 81 1_555 A N KCX 48 A KCX 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C KCX 48 A KCX 82 1_555 A N MET 49 A MET 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id KE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'meropenem, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4R,5S)-3-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 C31 KE1 doub 184 n n O7 C7 KE1 doub 185 n n C4A C1A KE1 sing 186 n n C4A C5A KE1 sing 187 n n O31 C31 KE1 sing 188 n n C1A S21 KE1 sing 189 n n C1A C2A KE1 sing 190 n n C31 C3 KE1 sing 191 n n S21 C2 KE1 sing 192 n n C7 C6 KE1 sing 193 n n C5A N3A KE1 sing 194 n n C5A C6A KE1 sing 195 n n C2A N3A KE1 sing 196 n n C3 N4 KE1 sing 197 n n C3 C2 KE1 doub 198 n n N4 C5 KE1 sing 199 n n C6 C5 KE1 sing 200 n n C6 C61 KE1 sing 201 n n C2 C1 KE1 sing 202 n n O62 C61 KE1 sing 203 n n O6A C6A KE1 doub 204 n n C6A N7A KE1 sing 205 n n C5 C1 KE1 sing 206 n n C61 C62 KE1 sing 207 n n C1 C11 KE1 sing 208 n n N7A C8A KE1 sing 209 n n N7A C9A KE1 sing 210 n n C1 H1 KE1 sing 211 n n C5 H4 KE1 sing 212 n n C7 H5 KE1 sing 213 n n C11 H7 KE1 sing 214 n n C11 H8 KE1 sing 215 n n C11 H9 KE1 sing 216 n n C1A H10 KE1 sing 217 n n C2A H11 KE1 sing 218 n n C2A H12 KE1 sing 219 n n C4A H13 KE1 sing 220 n n C4A H14 KE1 sing 221 n n C5A H15 KE1 sing 222 n n C6 H16 KE1 sing 223 n n C61 H17 KE1 sing 224 n n C62 H18 KE1 sing 225 n n C62 H19 KE1 sing 226 n n C62 H20 KE1 sing 227 n n C8A H21 KE1 sing 228 n n C8A H22 KE1 sing 229 n n C8A H23 KE1 sing 230 n n C9A H24 KE1 sing 231 n n C9A H25 KE1 sing 232 n n C9A H26 KE1 sing 233 n n N3A H27 KE1 sing 234 n n N4 H29 KE1 sing 235 n n O31 H31 KE1 sing 236 n n O62 H32 KE1 sing 237 n n # _atom_sites.entry_id 6N6Y _atom_sites.fract_transf_matrix[1][1] 0.005706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KE1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id KE1 _pdbx_nonpoly_scheme.auth_mon_id MER _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KE1 . . . B 2 -25.376 -37.826 14.603 1 142.65 ? C1 KE1 301 A 1 HETATM 2 C C2 KE1 . . . B 2 -25.208 -38.923 15.641 1 143.79 ? C2 KE1 301 A 1 HETATM 3 C C3 KE1 . . . B 2 -23.849 -39.437 15.312 1 130.19 ? C3 KE1 301 A 1 HETATM 4 C C5 KE1 . . . B 2 -24.25 -37.997 13.566 1 127.17 ? C5 KE1 301 A 1 HETATM 5 C C7 KE1 . . . B 2 -23.488 -39.583 11.759 1 88.82 ? C7 KE1 301 A 1 HETATM 6 C C11 KE1 . . . B 2 -26.804 -37.804 14.06 1 145.73 ? C11 KE1 301 A 1 HETATM 7 C C1A KE1 . . . B 2 -26.775 -40.97 16.963 1 160.13 ? C1A KE1 301 A 1 HETATM 8 C C2A KE1 . . . B 2 -26.291 -40.102 18.118 1 159.82 ? C2A KE1 301 A 1 HETATM 9 C C31 KE1 . . . B 2 -23.134 -40.433 16.102 1 117.25 ? C31 KE1 301 A 1 HETATM 10 C C4A KE1 . . . B 2 -28.273 -41.141 17.197 1 158.28 ? C4A KE1 301 A 1 HETATM 11 C C5A KE1 . . . B 2 -28.555 -40.671 18.622 1 160.95 ? C5A KE1 301 A 1 HETATM 12 C C6 KE1 . . . B 2 -24.637 -38.723 12.272 1 110.35 ? C6 KE1 301 A 1 HETATM 13 C C61 KE1 . . . B 2 -25.103 -37.804 11.141 1 119.28 ? C61 KE1 301 A 1 HETATM 14 C C62 KE1 . . . B 2 -25.706 -38.56 9.963 1 114.44 ? C62 KE1 301 A 1 HETATM 15 C C6A KE1 . . . B 2 -29.455 -39.468 18.617 1 160.85 ? C6A KE1 301 A 1 HETATM 16 C C8A KE1 . . . B 2 -29.793 -39.604 21.045 1 147.65 ? C8A KE1 301 A 1 HETATM 17 C C9A KE1 . . . B 2 -29.821 -37.429 19.907 1 149.03 ? C9A KE1 301 A 1 HETATM 18 N N3A KE1 . . . B 2 -27.253 -40.299 19.216 1 161.51 ? N3A KE1 301 A 1 HETATM 19 N N4 KE1 . . . B 2 -23.366 -38.927 14.267 1 129.71 ? N4 KE1 301 A 1 HETATM 20 N N7A KE1 . . . B 2 -29.681 -38.873 19.789 1 153.76 ? N7A KE1 301 A 1 HETATM 21 O O31 KE1 . . . B 2 -22.936 -40.207 17.316 1 109.16 ? O31 KE1 301 A 1 HETATM 22 O O32 KE1 . . . B 2 -22.747 -41.484 15.546 1 118.36 ? O32 KE1 301 A 1 HETATM 23 O O62 KE1 . . . B 2 -26.073 -36.898 11.672 1 124.8 ? O62 KE1 301 A 1 HETATM 24 O O6A KE1 . . . B 2 -29.934 -39.057 17.574 1 162.58 ? O6A KE1 301 A 1 HETATM 25 O O7 KE1 . . . B 2 -23.788 -40.963 11.981 1 107.42 ? O7 KE1 301 A 1 HETATM 26 S S21 KE1 . . . B 2 -26.433 -40.177 15.42 1 155.08 ? S21 KE1 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #