data_6N7K # _model_server_result.job_id Jy1T4ZhlpG0tVmel49PChg _model_server_result.datetime_utc '2024-11-13 06:18:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":204}' # _entry.id 6N7K # _exptl.entry_id 6N7K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N7K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 AA N N ? 7 BA N N ? 7 TA N N ? 7 UA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 1805 NAG 3 n G NAG 2 G 2 NAG A 1806 NAG 3 n H NAG 1 H 1 NAG B 1507 NAG 3 n H NAG 2 H 2 NAG B 1508 NAG 3 n I NAG 1 I 1 NAG D 1805 NAG 3 n I NAG 2 I 2 NAG D 1806 NAG 3 n J NAG 1 J 1 NAG E 1507 NAG 3 n J NAG 2 J 2 NAG E 1508 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 224 A CYS 203 1_555 A SG CYS 247 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 255 A CYS 234 1_555 A SG CYS 348 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 317 A CYS 296 1_555 A SG CYS 325 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 224 B CYS 203 1_555 B SG CYS 247 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 255 B CYS 234 1_555 B SG CYS 348 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 B SG CYS 317 B CYS 296 1_555 B SG CYS 325 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 D SG CYS 224 D CYS 203 1_555 D SG CYS 247 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 255 D CYS 234 1_555 D SG CYS 348 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 D SG CYS 317 D CYS 296 1_555 D SG CYS 325 D CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 E SG CYS 224 E CYS 203 1_555 E SG CYS 247 E CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 E SG CYS 255 E CYS 234 1_555 E SG CYS 348 E CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf12 E SG CYS 317 E CYS 296 1_555 E SG CYS 325 E CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 162 A ASN 141 1_555 O C1 NAG . A NAG 1807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 333 A ASN 312 1_555 K C1 NAG . A NAG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 A ND2 ASN 370 A ASN 349 1_555 L C1 NAG . A NAG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 435 A ASN 414 1_555 M C1 NAG . A NAG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 896 A ASN 875 1_555 N C1 NAG . A NAG 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 A ND2 ASN 1021 A ASN 1000 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale7 B ND2 ASN 162 B ASN 141 1_555 S C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale8 B ND2 ASN 333 B ASN 312 1_555 T C1 NAG . B NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale9 B ND2 ASN 370 B ASN 349 1_555 U C1 NAG . B NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 B ND2 ASN 435 B ASN 414 1_555 V C1 NAG . B NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale11 B ND2 ASN 896 B ASN 875 1_555 W C1 NAG . B NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 B ND2 ASN 1021 B ASN 1000 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 C N CYS 1 C CYS 24 1_555 CA C1 PLM . C PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale14 C C GLY 174 C GLY 197 1_555 Y O1 CLR . C CLR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale15 D ND2 ASN 162 D ASN 141 1_555 HA C1 NAG . D NAG 1807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 D ND2 ASN 333 D ASN 312 1_555 DA C1 NAG . D NAG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale17 D ND2 ASN 370 D ASN 349 1_555 EA C1 NAG . D NAG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale18 D ND2 ASN 435 D ASN 414 1_555 FA C1 NAG . D NAG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale19 D ND2 ASN 896 D ASN 875 1_555 GA C1 NAG . D NAG 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale20 D ND2 ASN 1021 D ASN 1000 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale21 E ND2 ASN 162 E ASN 141 1_555 LA C1 NAG . E NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale22 E ND2 ASN 333 E ASN 312 1_555 MA C1 NAG . E NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale23 E ND2 ASN 370 E ASN 349 1_555 NA C1 NAG . E NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale24 E ND2 ASN 435 E ASN 414 1_555 OA C1 NAG . E NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale25 E ND2 ASN 896 E ASN 875 1_555 PA C1 NAG . E NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale26 E ND2 ASN 1021 E ASN 1000 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale27 F N CYS 1 F CYS 24 1_555 VA C1 PLM . F PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale28 F C GLY 174 F GLY 197 1_555 RA O1 CLR . F CLR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale29 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale30 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale31 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale32 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 C OE1 GLU 66 C GLU 89 1_555 BA CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 C OE2 GLU 66 C GLU 89 1_555 BA CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 C OE2 GLU 67 C GLU 90 1_555 AA CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 C OD1 ASP 72 C ASP 95 1_555 BA CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 C OD2 ASP 72 C ASP 95 1_555 BA CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 C O THR 102 C THR 125 1_555 BA CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc7 C NE2 HIS 117 C HIS 140 1_555 Z ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 C OD1 ASP 124 C ASP 147 1_555 Z ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 C OD2 ASP 124 C ASP 147 1_555 Z ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 C ND1 HIS 159 C HIS 182 1_555 Z ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc11 F OE1 GLU 66 F GLU 89 1_555 UA CA CA . F CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc12 F OE2 GLU 66 F GLU 89 1_555 UA CA CA . F CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 F OE2 GLU 67 F GLU 90 1_555 TA CA CA . F CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc14 F OD1 ASP 72 F ASP 95 1_555 UA CA CA . F CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc15 F OD2 ASP 72 F ASP 95 1_555 UA CA CA . F CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc16 F O THR 102 F THR 125 1_555 UA CA CA . F CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc17 F NE2 HIS 117 F HIS 140 1_555 SA ZN ZN . F ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc18 F OD1 ASP 124 F ASP 147 1_555 SA ZN ZN . F ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc19 F OD2 ASP 124 F ASP 147 1_555 SA ZN ZN . F ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc20 F ND1 HIS 159 F HIS 182 1_555 SA ZN ZN . F ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N7K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 NAG A 1 1801 1801 NAG NAG . L 4 NAG A 1 1802 1802 NAG NAG . M 4 NAG A 1 1803 1803 NAG NAG . N 4 NAG A 1 1804 1804 NAG NAG . O 4 NAG A 1 1807 1807 NAG NAG . P 5 CLR A 1 1808 2501 CLR CLR . Q 5 CLR A 1 1809 2502 CLR CLR . R 5 CLR A 1 1810 2503 CLR CLR . S 4 NAG B 1 1501 1501 NAG NAG . T 4 NAG B 1 1502 1503 NAG NAG . U 4 NAG B 1 1503 1504 NAG NAG . V 4 NAG B 1 1504 1505 NAG NAG . W 4 NAG B 1 1505 1506 NAG NAG . X 5 CLR B 1 1508 2503 CLR CLR . Y 5 CLR C 1 201 198 CLR CLR . Z 6 ZN C 1 202 201 ZN ZN . AA 7 CA C 1 203 294 CA CA . BA 7 CA C 1 204 295 CA CA . CA 8 PLM C 1 205 23 PLM PLM . DA 4 NAG D 1 1801 1801 NAG NAG . EA 4 NAG D 1 1802 1802 NAG NAG . FA 4 NAG D 1 1803 1803 NAG NAG . GA 4 NAG D 1 1804 1804 NAG NAG . HA 4 NAG D 1 1807 1807 NAG NAG . IA 5 CLR D 1 1808 2501 CLR CLR . JA 5 CLR D 1 1809 2502 CLR CLR . KA 5 CLR D 1 1810 2503 CLR CLR . LA 4 NAG E 1 1501 1501 NAG NAG . MA 4 NAG E 1 1502 1503 NAG NAG . NA 4 NAG E 1 1503 1504 NAG NAG . OA 4 NAG E 1 1504 1505 NAG NAG . PA 4 NAG E 1 1505 1506 NAG NAG . QA 5 CLR E 1 1508 2503 CLR CLR . RA 5 CLR F 1 201 198 CLR CLR . SA 6 ZN F 1 202 201 ZN ZN . TA 7 CA F 1 203 294 CA CA . UA 7 CA F 1 204 295 CA CA . VA 8 PLM F 1 205 23 PLM PLM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id BA _atom_site.label_entity_id 7 _atom_site.Cartn_x 180.851 _atom_site.Cartn_y 197.12 _atom_site.Cartn_z 76.023 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #