data_6N8W
#
_model_server_result.job_id            2KFOhV14rag_xdmyomhn4g 
_model_server_result.datetime_utc      '2024-11-01 11:33:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n8w 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":303}' 
#
_entry.id    6N8W 
#
_exptl.entry_id    6N8W 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    33 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.451 
_cell.angle_gamma         90 
_cell.entry_id            6N8W 
_cell.length_a            175.25 
_cell.length_b            70.249 
_cell.length_c            101.606 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6N8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,LA 1 1 
B,M,N,O,P,Q,R,S,T,U,V,MA 2 1 
C,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,NA 3 1 
D,IA,JA,KA,OA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6N8W 
_atom_sites.fract_transf_matrix[1][1]    0.005706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00377 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 301 1 GOL GOL . 
F 2 GOL A 1 302 7 GOL GOL . 
G 2 GOL A 1 303 10 GOL GOL . 
H 2 GOL A 1 304 11 GOL GOL . 
I 2 GOL A 1 305 17 GOL GOL . 
J 2 GOL A 1 306 35 GOL GOL . 
K 2 GOL A 1 307 37 GOL GOL . 
L 2 GOL A 1 308 38 GOL GOL . 
M 2 GOL B 1 301 3 GOL GOL . 
N 2 GOL B 1 302 5 GOL GOL . 
O 2 GOL B 1 303 9 GOL GOL . 
P 2 GOL B 1 304 15 GOL GOL . 
Q 2 GOL B 1 305 16 GOL GOL . 
R 2 GOL B 1 306 26 GOL GOL . 
S 2 GOL B 1 307 27 GOL GOL . 
T 2 GOL B 1 308 29 GOL GOL . 
U 2 GOL B 1 309 39 GOL GOL . 
V 2 GOL B 1 310 42 GOL GOL . 
W 2 GOL C 1 301 8 GOL GOL . 
X 2 GOL C 1 302 12 GOL GOL . 
Y 2 GOL C 1 303 13 GOL GOL . 
Z 2 GOL C 1 304 14 GOL GOL . 
AA 2 GOL C 1 305 20 GOL GOL . 
BA 2 GOL C 1 306 21 GOL GOL . 
CA 2 GOL C 1 307 24 GOL GOL . 
DA 2 GOL C 1 308 28 GOL GOL . 
EA 2 GOL C 1 309 32 GOL GOL . 
FA 2 GOL C 1 310 33 GOL GOL . 
GA 2 GOL C 1 311 34 GOL GOL . 
HA 2 GOL C 1 312 40 GOL GOL . 
IA 2 GOL D 1 301 2 GOL GOL . 
JA 2 GOL D 1 302 4 GOL GOL . 
KA 2 GOL D 1 303 22 GOL GOL . 
LA 3 HOH A 1 401 130 HOH HOH . 
LA 3 HOH A 2 402 108 HOH HOH . 
LA 3 HOH A 3 403 147 HOH HOH . 
LA 3 HOH A 4 404 98 HOH HOH . 
LA 3 HOH A 5 405 127 HOH HOH . 
LA 3 HOH A 6 406 95 HOH HOH . 
LA 3 HOH A 7 407 56 HOH HOH . 
LA 3 HOH A 8 408 128 HOH HOH . 
LA 3 HOH A 9 409 89 HOH HOH . 
LA 3 HOH A 10 410 103 HOH HOH . 
MA 3 HOH B 1 401 110 HOH HOH . 
MA 3 HOH B 2 402 165 HOH HOH . 
MA 3 HOH B 3 403 140 HOH HOH . 
MA 3 HOH B 4 404 116 HOH HOH . 
MA 3 HOH B 5 405 28 HOH HOH . 
MA 3 HOH B 6 406 166 HOH HOH . 
MA 3 HOH B 7 407 1 HOH HOH . 
MA 3 HOH B 8 408 111 HOH HOH . 
MA 3 HOH B 9 409 117 HOH HOH . 
MA 3 HOH B 10 410 153 HOH HOH . 
MA 3 HOH B 11 411 150 HOH HOH . 
MA 3 HOH B 12 412 149 HOH HOH . 
MA 3 HOH B 13 413 151 HOH HOH . 
MA 3 HOH B 14 414 26 HOH HOH . 
MA 3 HOH B 15 415 164 HOH HOH . 
NA 3 HOH C 1 401 135 HOH HOH . 
NA 3 HOH C 2 402 104 HOH HOH . 
NA 3 HOH C 3 403 159 HOH HOH . 
NA 3 HOH C 4 404 144 HOH HOH . 
NA 3 HOH C 5 405 155 HOH HOH . 
NA 3 HOH C 6 406 86 HOH HOH . 
NA 3 HOH C 7 407 143 HOH HOH . 
NA 3 HOH C 8 408 134 HOH HOH . 
NA 3 HOH C 9 409 102 HOH HOH . 
NA 3 HOH C 10 410 157 HOH HOH . 
NA 3 HOH C 11 411 156 HOH HOH . 
NA 3 HOH C 12 412 101 HOH HOH . 
NA 3 HOH C 13 413 58 HOH HOH . 
OA 3 HOH D 1 401 141 HOH HOH . 
OA 3 HOH D 2 402 105 HOH HOH . 
OA 3 HOH D 3 403 47 HOH HOH . 
OA 3 HOH D 4 404 125 HOH HOH . 
OA 3 HOH D 5 405 97 HOH HOH . 
OA 3 HOH D 6 406 126 HOH HOH . 
OA 3 HOH D 7 407 39 HOH HOH . 
OA 3 HOH D 8 408 40 HOH HOH . 
OA 3 HOH D 9 409 76 HOH HOH . 
OA 3 HOH D 10 410 114 HOH HOH . 
OA 3 HOH D 11 411 142 HOH HOH . 
OA 3 HOH D 12 412 154 HOH HOH . 
OA 3 HOH D 13 413 161 HOH HOH . 
OA 3 HOH D 14 414 163 HOH HOH . 
OA 3 HOH D 15 415 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . KA 2 -6.81 -28.399 58.847 1 65.73 ? C1 GOL 303 D 1 
HETATM 2 O O1 GOL . . . KA 2 -7.448 -28.362 57.589 1 67.28 ? O1 GOL 303 D 1 
HETATM 3 C C2 GOL . . . KA 2 -7.503 -27.429 59.796 1 63.93 ? C2 GOL 303 D 1 
HETATM 4 O O2 GOL . . . KA 2 -8.831 -27.224 59.37 1 63.16 ? O2 GOL 303 D 1 
HETATM 5 C C3 GOL . . . KA 2 -7.506 -28.007 61.206 1 64.84 ? C3 GOL 303 D 1 
HETATM 6 O O3 GOL . . . KA 2 -6.183 -28.086 61.687 1 63.98 ? O3 GOL 303 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#