data_6N8Z
#
_model_server_result.job_id            ssxmpXCoVQnMrXMRFRd6tg 
_model_server_result.datetime_utc      '2024-11-04 20:20:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1003}' 
#
_entry.id    6N8Z 
#
_exptl.entry_id    6N8Z 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 713 B CYS 718 1_555 B SG CYS 716 B CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 D SG CYS 713 D CYS 718 1_555 D SG CYS 716 D CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6N8Z 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 1001 1001 ATP ATP . 
H 2 ATP A 1 1002 1002 ATP ATP . 
I 2 ATP B 1 1001 1001 ATP ATP . 
J 2 ATP B 1 1002 1002 ATP ATP . 
K 2 ATP C 1 1001 1001 ATP ATP . 
L 2 ATP C 1 1002 1002 ATP ATP . 
M 2 ATP D 1 901 1002 ATP ATP . 
N 2 ATP D 1 902 1001 ATP ATP . 
O 2 ATP E 1 1001 1001 ATP ATP . 
P 2 ATP E 1 1002 1002 ATP ATP . 
Q 2 ATP E 1 1003 1001 ATP ATP . 
R 2 ATP F 1 901 1002 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 2 124.375 164.36 155.782 1 7.31 ? PG ATP 1003 E 1 
HETATM 2 O O1G ATP . . . Q 2 126.422 164.481 155.754 1 21.26 ? O1G ATP 1003 E 1 
HETATM 3 O O2G ATP . . . Q 2 123.751 163.493 156.993 1 7.12 ? O2G ATP 1003 E 1 
HETATM 4 O O3G ATP . . . Q 2 123.755 163.974 154.499 1 8.18 ? O3G ATP 1003 E 1 
HETATM 5 P PB ATP . . . Q 2 122.705 166.188 155.553 1 6.87 ? PB ATP 1003 E 1 
HETATM 6 O O1B ATP . . . Q 2 122.023 166.389 156.864 1 7.25 ? O1B ATP 1003 E 1 
HETATM 7 O O2B ATP . . . Q 2 122.353 165.166 154.532 1 2.85 ? O2B ATP 1003 E 1 
HETATM 8 O O3B ATP . . . Q 2 124.173 165.906 155.934 1 3.75 ? O3B ATP 1003 E 1 
HETATM 9 P PA ATP . . . Q 2 122.242 168.638 155.801 1 5.84 ? PA ATP 1003 E 1 
HETATM 10 O O1A ATP . . . Q 2 123.25 168.67 156.922 1 1.35 ? O1A ATP 1003 E 1 
HETATM 11 O O2A ATP . . . Q 2 120.79 168.379 156.065 1 3.3 ? O2A ATP 1003 E 1 
HETATM 12 O O3A ATP . . . Q 2 122.815 167.562 154.844 1 4.63 ? O3A ATP 1003 E 1 
HETATM 13 O O5' ATP . . . Q 2 122.337 169.901 154.859 1 1.9 ? O5' ATP 1003 E 1 
HETATM 14 C C5' ATP . . . Q 2 121.406 170.965 154.942 1 2.35 ? C5' ATP 1003 E 1 
HETATM 15 C C4' ATP . . . Q 2 122.261 172.151 155.352 1 1.71 ? C4' ATP 1003 E 1 
HETATM 16 O O4' ATP . . . Q 2 122.542 173.005 154.255 1 2.58 ? O4' ATP 1003 E 1 
HETATM 17 C C3' ATP . . . Q 2 121.488 172.979 156.367 1 2.68 ? C3' ATP 1003 E 1 
HETATM 18 O O3' ATP . . . Q 2 122.143 172.879 157.646 1 6.75 ? O3' ATP 1003 E 1 
HETATM 19 C C2' ATP . . . Q 2 121.441 174.381 155.799 1 3.33 ? C2' ATP 1003 E 1 
HETATM 20 O O2' ATP . . . Q 2 122.486 175.2 156.297 1 9.08 ? O2' ATP 1003 E 1 
HETATM 21 C C1' ATP . . . Q 2 121.713 174.167 154.343 1 2.12 ? C1' ATP 1003 E 1 
HETATM 22 N N9 ATP . . . Q 2 120.438 173.932 153.649 1 0.54 ? N9 ATP 1003 E 1 
HETATM 23 C C8 ATP . . . Q 2 120.164 172.867 152.891 1 1.66 ? C8 ATP 1003 E 1 
HETATM 24 N N7 ATP . . . Q 2 118.907 172.931 152.392 1 0.75 ? N7 ATP 1003 E 1 
HETATM 25 C C5 ATP . . . Q 2 118.368 174.065 152.828 1 0 ? C5 ATP 1003 E 1 
HETATM 26 C C6 ATP . . . Q 2 117.069 174.718 152.639 1 1.36 ? C6 ATP 1003 E 1 
HETATM 27 N N6 ATP . . . Q 2 116.121 174.124 151.892 1 3.39 ? N6 ATP 1003 E 1 
HETATM 28 N N1 ATP . . . Q 2 116.897 175.895 153.253 1 2.74 ? N1 ATP 1003 E 1 
HETATM 29 C C2 ATP . . . Q 2 117.872 176.447 154.003 1 7.17 ? C2 ATP 1003 E 1 
HETATM 30 N N3 ATP . . . Q 2 119.072 175.897 154.224 1 3.5 ? N3 ATP 1003 E 1 
HETATM 31 C C4 ATP . . . Q 2 119.375 174.721 153.666 1 0.67 ? C4 ATP 1003 E 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    174 
_model_server_stats.query_time_ms           405 
_model_server_stats.encode_time_ms          43 
_model_server_stats.element_count           31 
#