data_6N9D # _model_server_result.job_id yuPwDLoLKdTyblFxr9N5Mw _model_server_result.datetime_utc '2024-12-21 16:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6N9D # _exptl.entry_id 6N9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6N9D _cell.length_a 70.031 _cell.length_b 70.031 _cell.length_c 319.512 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 1 B CYS 1 1_555 B SG CYS 70 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 99 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 13 B CYS 13 1_555 B SG CYS 124 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 127 B CYS 127 1_555 B SG CYS 174 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 B SG CYS 132 B CYS 132 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 145 B CYS 145 1_555 B SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD1 ASP 25 A ASP 107 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc2 A OD2 ASP 25 A ASP 107 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 A O GLY 79 A GLY 161 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc9 A O VAL 81 A VAL 163 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc11 A O GLY 91 A GLY 173 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc12 A O ASN 93 A ASN 175 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc16 A O ASP 100 A ASP 182 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc19 A O GLU 102 A GLU 184 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc23 F ZN ZN . A ZN 304 1_555 B N CYS 1 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc24 F ZN ZN . A ZN 304 1_555 B O CYS 1 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc25 G CA CA . A CA 305 1_555 H O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N9D _atom_sites.fract_transf_matrix[1][1] 0.014279 _atom_sites.fract_transf_matrix[1][2] 0.008244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 3 CA A 1 302 1 CA CA . E 4 ZN A 1 303 2 ZN ZN . F 4 ZN A 1 304 3 ZN ZN . G 3 CA A 1 305 1 CA CA . H 5 HOH A 1 401 59 HOH HOH . H 5 HOH A 2 402 112 HOH HOH . H 5 HOH A 3 403 19 HOH HOH . H 5 HOH A 4 404 15 HOH HOH . H 5 HOH A 5 405 4 HOH HOH . H 5 HOH A 6 406 90 HOH HOH . H 5 HOH A 7 407 99 HOH HOH . H 5 HOH A 8 408 3 HOH HOH . H 5 HOH A 9 409 35 HOH HOH . H 5 HOH A 10 410 110 HOH HOH . H 5 HOH A 11 411 97 HOH HOH . H 5 HOH A 12 412 13 HOH HOH . H 5 HOH A 13 413 87 HOH HOH . H 5 HOH A 14 414 113 HOH HOH . H 5 HOH A 15 415 92 HOH HOH . H 5 HOH A 16 416 42 HOH HOH . H 5 HOH A 17 417 104 HOH HOH . H 5 HOH A 18 418 79 HOH HOH . H 5 HOH A 19 419 63 HOH HOH . H 5 HOH A 20 420 96 HOH HOH . H 5 HOH A 21 421 32 HOH HOH . I 5 HOH B 1 201 117 HOH HOH . I 5 HOH B 2 202 51 HOH HOH . I 5 HOH B 3 203 7 HOH HOH . I 5 HOH B 4 204 111 HOH HOH . I 5 HOH B 5 205 49 HOH HOH . I 5 HOH B 6 206 100 HOH HOH . I 5 HOH B 7 207 101 HOH HOH . I 5 HOH B 8 208 98 HOH HOH . I 5 HOH B 9 209 103 HOH HOH . I 5 HOH B 10 210 116 HOH HOH . I 5 HOH B 11 211 114 HOH HOH . I 5 HOH B 12 212 8 HOH HOH . I 5 HOH B 13 213 6 HOH HOH . I 5 HOH B 14 214 21 HOH HOH . I 5 HOH B 15 215 115 HOH HOH . I 5 HOH B 16 216 41 HOH HOH . I 5 HOH B 17 217 84 HOH HOH . I 5 HOH B 18 218 75 HOH HOH . I 5 HOH B 19 219 47 HOH HOH . I 5 HOH B 20 220 22 HOH HOH . I 5 HOH B 21 221 30 HOH HOH . I 5 HOH B 22 222 23 HOH HOH . I 5 HOH B 23 223 50 HOH HOH . I 5 HOH B 24 224 78 HOH HOH . I 5 HOH B 25 225 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.658 _atom_site.Cartn_y 9.285 _atom_site.Cartn_z 13.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 545 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #