data_6N9P # _model_server_result.job_id BEdaX9lb1wgJlu5pMzSleQ _model_server_result.datetime_utc '2024-10-18 16:28:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6N9P # _exptl.entry_id 6N9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[2-amino-3-(4-phenoxyphenyl)pyridin-4-yl]oxy}phenyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N9P _cell.length_a 72.02 _cell.length_b 104.412 _cell.length_c 38.018 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 481 1_555 B C32 KHD . A KHD 701 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.653 ? covale ? covale2 A SG CYS 93 A CYS 481 1_555 B C32 KHD . A KHD 701 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.837 ? # _chem_comp.formula 'C26 H23 N3 O3' _chem_comp.formula_weight 425.479 _chem_comp.id KHD _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[2-amino-3-(4-phenoxyphenyl)pyridin-4-yl]oxy}phenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N9P _atom_sites.fract_transf_matrix[1][1] 0.013885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KHD A 1 701 1 KHD LIG . C 3 HOH A 1 801 134 HOH HOH . C 3 HOH A 2 802 192 HOH HOH . C 3 HOH A 3 803 118 HOH HOH . C 3 HOH A 4 804 235 HOH HOH . C 3 HOH A 5 805 230 HOH HOH . C 3 HOH A 6 806 152 HOH HOH . C 3 HOH A 7 807 125 HOH HOH . C 3 HOH A 8 808 124 HOH HOH . C 3 HOH A 9 809 116 HOH HOH . C 3 HOH A 10 810 156 HOH HOH . C 3 HOH A 11 811 211 HOH HOH . C 3 HOH A 12 812 78 HOH HOH . C 3 HOH A 13 813 62 HOH HOH . C 3 HOH A 14 814 31 HOH HOH . C 3 HOH A 15 815 58 HOH HOH . C 3 HOH A 16 816 96 HOH HOH . C 3 HOH A 17 817 106 HOH HOH . C 3 HOH A 18 818 38 HOH HOH . C 3 HOH A 19 819 218 HOH HOH . C 3 HOH A 20 820 110 HOH HOH . C 3 HOH A 21 821 95 HOH HOH . C 3 HOH A 22 822 132 HOH HOH . C 3 HOH A 23 823 131 HOH HOH . C 3 HOH A 24 824 47 HOH HOH . C 3 HOH A 25 825 35 HOH HOH . C 3 HOH A 26 826 49 HOH HOH . C 3 HOH A 27 827 126 HOH HOH . C 3 HOH A 28 828 91 HOH HOH . C 3 HOH A 29 829 212 HOH HOH . C 3 HOH A 30 830 51 HOH HOH . C 3 HOH A 31 831 224 HOH HOH . C 3 HOH A 32 832 48 HOH HOH . C 3 HOH A 33 833 205 HOH HOH . C 3 HOH A 34 834 64 HOH HOH . C 3 HOH A 35 835 215 HOH HOH . C 3 HOH A 36 836 135 HOH HOH . C 3 HOH A 37 837 20 HOH HOH . C 3 HOH A 38 838 73 HOH HOH . C 3 HOH A 39 839 45 HOH HOH . C 3 HOH A 40 840 55 HOH HOH . C 3 HOH A 41 841 109 HOH HOH . C 3 HOH A 42 842 121 HOH HOH . C 3 HOH A 43 843 196 HOH HOH . C 3 HOH A 44 844 216 HOH HOH . C 3 HOH A 45 845 210 HOH HOH . C 3 HOH A 46 846 17 HOH HOH . C 3 HOH A 47 847 4 HOH HOH . C 3 HOH A 48 848 147 HOH HOH . C 3 HOH A 49 849 54 HOH HOH . C 3 HOH A 50 850 130 HOH HOH . C 3 HOH A 51 851 163 HOH HOH . C 3 HOH A 52 852 81 HOH HOH . C 3 HOH A 53 853 27 HOH HOH . C 3 HOH A 54 854 214 HOH HOH . C 3 HOH A 55 855 9 HOH HOH . C 3 HOH A 56 856 10 HOH HOH . C 3 HOH A 57 857 184 HOH HOH . C 3 HOH A 58 858 220 HOH HOH . C 3 HOH A 59 859 87 HOH HOH . C 3 HOH A 60 860 21 HOH HOH . C 3 HOH A 61 861 145 HOH HOH . C 3 HOH A 62 862 76 HOH HOH . C 3 HOH A 63 863 228 HOH HOH . C 3 HOH A 64 864 127 HOH HOH . C 3 HOH A 65 865 213 HOH HOH . C 3 HOH A 66 866 30 HOH HOH . C 3 HOH A 67 867 107 HOH HOH . C 3 HOH A 68 868 3 HOH HOH . C 3 HOH A 69 869 103 HOH HOH . C 3 HOH A 70 870 199 HOH HOH . C 3 HOH A 71 871 112 HOH HOH . C 3 HOH A 72 872 175 HOH HOH . C 3 HOH A 73 873 2 HOH HOH . C 3 HOH A 74 874 56 HOH HOH . C 3 HOH A 75 875 14 HOH HOH . C 3 HOH A 76 876 6 HOH HOH . C 3 HOH A 77 877 39 HOH HOH . C 3 HOH A 78 878 44 HOH HOH . C 3 HOH A 79 879 69 HOH HOH . C 3 HOH A 80 880 200 HOH HOH . C 3 HOH A 81 881 209 HOH HOH . C 3 HOH A 82 882 19 HOH HOH . C 3 HOH A 83 883 75 HOH HOH . C 3 HOH A 84 884 117 HOH HOH . C 3 HOH A 85 885 97 HOH HOH . C 3 HOH A 86 886 52 HOH HOH . C 3 HOH A 87 887 29 HOH HOH . C 3 HOH A 88 888 201 HOH HOH . C 3 HOH A 89 889 90 HOH HOH . C 3 HOH A 90 890 89 HOH HOH . C 3 HOH A 91 891 42 HOH HOH . C 3 HOH A 92 892 63 HOH HOH . C 3 HOH A 93 893 67 HOH HOH . C 3 HOH A 94 894 33 HOH HOH . C 3 HOH A 95 895 123 HOH HOH . C 3 HOH A 96 896 82 HOH HOH . C 3 HOH A 97 897 8 HOH HOH . C 3 HOH A 98 898 114 HOH HOH . C 3 HOH A 99 899 74 HOH HOH . C 3 HOH A 100 900 159 HOH HOH . C 3 HOH A 101 901 12 HOH HOH . C 3 HOH A 102 902 133 HOH HOH . C 3 HOH A 103 903 181 HOH HOH . C 3 HOH A 104 904 86 HOH HOH . C 3 HOH A 105 905 120 HOH HOH . C 3 HOH A 106 906 22 HOH HOH . C 3 HOH A 107 907 234 HOH HOH . C 3 HOH A 108 908 160 HOH HOH . C 3 HOH A 109 909 15 HOH HOH . C 3 HOH A 110 910 143 HOH HOH . C 3 HOH A 111 911 26 HOH HOH . C 3 HOH A 112 912 53 HOH HOH . C 3 HOH A 113 913 18 HOH HOH . C 3 HOH A 114 914 37 HOH HOH . C 3 HOH A 115 915 169 HOH HOH . C 3 HOH A 116 916 16 HOH HOH . C 3 HOH A 117 917 93 HOH HOH . C 3 HOH A 118 918 1 HOH HOH . C 3 HOH A 119 919 66 HOH HOH . C 3 HOH A 120 920 167 HOH HOH . C 3 HOH A 121 921 5 HOH HOH . C 3 HOH A 122 922 222 HOH HOH . C 3 HOH A 123 923 141 HOH HOH . C 3 HOH A 124 924 119 HOH HOH . C 3 HOH A 125 925 178 HOH HOH . C 3 HOH A 126 926 34 HOH HOH . C 3 HOH A 127 927 165 HOH HOH . C 3 HOH A 128 928 99 HOH HOH . C 3 HOH A 129 929 155 HOH HOH . C 3 HOH A 130 930 149 HOH HOH . C 3 HOH A 131 931 115 HOH HOH . C 3 HOH A 132 932 36 HOH HOH . C 3 HOH A 133 933 176 HOH HOH . C 3 HOH A 134 934 71 HOH HOH . C 3 HOH A 135 935 70 HOH HOH . C 3 HOH A 136 936 32 HOH HOH . C 3 HOH A 137 937 206 HOH HOH . C 3 HOH A 138 938 185 HOH HOH . C 3 HOH A 139 939 65 HOH HOH . C 3 HOH A 140 940 13 HOH HOH . C 3 HOH A 141 941 83 HOH HOH . C 3 HOH A 142 942 57 HOH HOH . C 3 HOH A 143 943 61 HOH HOH . C 3 HOH A 144 944 60 HOH HOH . C 3 HOH A 145 945 227 HOH HOH . C 3 HOH A 146 946 88 HOH HOH . C 3 HOH A 147 947 146 HOH HOH . C 3 HOH A 148 948 111 HOH HOH . C 3 HOH A 149 949 46 HOH HOH . C 3 HOH A 150 950 41 HOH HOH . C 3 HOH A 151 951 25 HOH HOH . C 3 HOH A 152 952 23 HOH HOH . C 3 HOH A 153 953 221 HOH HOH . C 3 HOH A 154 954 186 HOH HOH . C 3 HOH A 155 955 138 HOH HOH . C 3 HOH A 156 956 207 HOH HOH . C 3 HOH A 157 957 84 HOH HOH . C 3 HOH A 158 958 217 HOH HOH . C 3 HOH A 159 959 208 HOH HOH . C 3 HOH A 160 960 77 HOH HOH . C 3 HOH A 161 961 50 HOH HOH . C 3 HOH A 162 962 11 HOH HOH . C 3 HOH A 163 963 233 HOH HOH . C 3 HOH A 164 964 68 HOH HOH . C 3 HOH A 165 965 226 HOH HOH . C 3 HOH A 166 966 140 HOH HOH . C 3 HOH A 167 967 59 HOH HOH . C 3 HOH A 168 968 219 HOH HOH . C 3 HOH A 169 969 43 HOH HOH . C 3 HOH A 170 970 72 HOH HOH . C 3 HOH A 171 971 157 HOH HOH . C 3 HOH A 172 972 202 HOH HOH . C 3 HOH A 173 973 7 HOH HOH . C 3 HOH A 174 974 198 HOH HOH . C 3 HOH A 175 975 104 HOH HOH . C 3 HOH A 176 976 232 HOH HOH . C 3 HOH A 177 977 225 HOH HOH . C 3 HOH A 178 978 177 HOH HOH . C 3 HOH A 179 979 187 HOH HOH . C 3 HOH A 180 980 40 HOH HOH . C 3 HOH A 181 981 102 HOH HOH . C 3 HOH A 182 982 108 HOH HOH . C 3 HOH A 183 983 85 HOH HOH . C 3 HOH A 184 984 223 HOH HOH . C 3 HOH A 185 985 80 HOH HOH . C 3 HOH A 186 986 105 HOH HOH . C 3 HOH A 187 987 197 HOH HOH . C 3 HOH A 188 988 101 HOH HOH . C 3 HOH A 189 989 24 HOH HOH . C 3 HOH A 190 990 183 HOH HOH . C 3 HOH A 191 991 194 HOH HOH . C 3 HOH A 192 992 161 HOH HOH . C 3 HOH A 193 993 229 HOH HOH . C 3 HOH A 194 994 154 HOH HOH . C 3 HOH A 195 995 191 HOH HOH . C 3 HOH A 196 996 128 HOH HOH . C 3 HOH A 197 997 171 HOH HOH . C 3 HOH A 198 998 28 HOH HOH . C 3 HOH A 199 999 203 HOH HOH . C 3 HOH A 200 1000 168 HOH HOH . C 3 HOH A 201 1001 150 HOH HOH . C 3 HOH A 202 1002 182 HOH HOH . C 3 HOH A 203 1003 204 HOH HOH . C 3 HOH A 204 1004 231 HOH HOH . C 3 HOH A 205 1005 173 HOH HOH . C 3 HOH A 206 1006 129 HOH HOH . C 3 HOH A 207 1007 189 HOH HOH . C 3 HOH A 208 1008 190 HOH HOH . C 3 HOH A 209 1009 195 HOH HOH . C 3 HOH A 210 1010 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 KHD . . . B 2 18.161 5.151 0.7 1 14.35 ? N3 KHD 701 A 1 HETATM 2 C C4 KHD . . . B 2 18.075 5.287 2.036 1 19.79 ? C4 KHD 701 A 1 HETATM 3 C C5 KHD . . . B 2 19.153 5.772 2.77 1 20.83 ? C5 KHD 701 A 1 HETATM 4 C C6 KHD . . . B 2 20.316 6.137 2.098 1 26.45 ? C6 KHD 701 A 1 HETATM 5 C C8 KHD . . . B 2 18.959 5.895 4.249 1 19.55 ? C8 KHD 701 A 1 HETATM 6 C C10 KHD . . . B 2 18.509 4.861 6.393 1 17.27 ? C10 KHD 701 A 1 HETATM 7 C C13 KHD . . . B 2 18.958 7.15 4.869 1 16.54 ? C13 KHD 701 A 1 HETATM 8 C C15 KHD . . . B 2 17.166 6.873 8.813 1 27.76 ? C15 KHD 701 A 1 HETATM 9 C C17 KHD . . . B 2 14.963 7.79 8.434 1 20.9 ? C17 KHD 701 A 1 HETATM 10 C C20 KHD . . . B 2 17.09 7.274 10.138 1 21.43 ? C20 KHD 701 A 1 HETATM 11 C C22 KHD . . . B 2 22.498 7.17 2.145 1 22.13 ? C22 KHD 701 A 1 HETATM 12 C C24 KHD . . . B 2 24.561 6.996 0.889 1 22.25 ? C24 KHD 701 A 1 HETATM 13 C C26 KHD . . . B 2 23.746 9.167 1.574 1 20.32 ? C26 KHD 701 A 1 HETATM 14 O O31 KHD . . . B 2 25.381 10.736 0.049 1 19.64 ? O31 KHD 701 A 1 HETATM 15 C C29 KHD . . . B 2 24.671 11.261 0.889 1 18.25 ? C29 KHD 701 A 1 HETATM 16 C C30 KHD . . . B 2 24.691 12.759 1.122 1 18.89 ? C30 KHD 701 A 1 HETATM 17 C C32 KHD . . . B 2 23.866 13.502 0.102 1 33.29 ? C32 KHD 701 A 1 HETATM 18 N N28 KHD . . . B 2 23.851 10.565 1.658 1 15.03 ? N28 KHD 701 A 1 HETATM 19 C C27 KHD . . . B 2 22.659 8.555 2.188 1 18.99 ? C27 KHD 701 A 1 HETATM 20 C C23 KHD . . . B 2 23.458 6.382 1.504 1 21.6 ? C23 KHD 701 A 1 HETATM 21 C C25 KHD . . . B 2 24.709 8.386 0.929 1 22.82 ? C25 KHD 701 A 1 HETATM 22 O O21 KHD . . . B 2 21.4 6.626 2.769 1 13.98 ? O21 KHD 701 A 1 HETATM 23 N N7 KHD . . . B 2 16.913 4.937 2.647 1 14.31 ? N7 KHD 701 A 1 HETATM 24 C C2 KHD . . . B 2 19.273 5.495 0.035 1 20.18 ? C2 KHD 701 A 1 HETATM 25 C C1 KHD . . . B 2 20.378 5.993 0.715 1 18.28 ? C1 KHD 701 A 1 HETATM 26 C C9 KHD . . . B 2 18.722 4.756 5.018 1 17.03 ? C9 KHD 701 A 1 HETATM 27 C C11 KHD . . . B 2 18.517 6.115 7.006 1 25.13 ? C11 KHD 701 A 1 HETATM 28 C C12 KHD . . . B 2 18.743 7.26 6.242 1 15.3 ? C12 KHD 701 A 1 HETATM 29 O O14 KHD . . . B 2 18.296 6.225 8.354 1 24.39 ? O14 KHD 701 A 1 HETATM 30 C C16 KHD . . . B 2 16.092 7.136 7.963 1 22.41 ? C16 KHD 701 A 1 HETATM 31 C C18 KHD . . . B 2 14.894 8.188 9.764 1 16.44 ? C18 KHD 701 A 1 HETATM 32 C C19 KHD . . . B 2 15.96 7.931 10.614 1 25.95 ? C19 KHD 701 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #