data_6NAL # _model_server_result.job_id V_04nx1d2PbRJac7XtIUQA _model_server_result.datetime_utc '2024-11-14 19:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6NAL # _exptl.entry_id 6NAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.05 _cell.angle_gamma 90 _cell.entry_id 6NAL _cell.length_a 141.07 _cell.length_b 85.43 _cell.length_c 102.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 1 3 A,C,D,F 2 1,2 B,E,G 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -70.535 -42.715 0 4 'crystal symmetry operation' 4_545 -x+1/2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 70.535 -42.715 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 21 A VAL 22 1_555 A N MSE 22 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 22 A MSE 23 1_555 A N VAL 23 A VAL 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 47 A VAL 48 1_555 A N MSE 48 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 48 A MSE 49 1_555 A N THR 49 A THR 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C LEU 159 A LEU 160 1_555 A N MSE 160 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C MSE 160 A MSE 161 1_555 A N LEU 161 A LEU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C SER 308 A SER 309 1_555 A N MSE 309 A MSE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 309 A MSE 310 1_555 A N ASP 310 A ASP 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C SER 469 A SER 470 1_555 A N MSE 470 A MSE 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C MSE 470 A MSE 471 1_555 A N THR 471 A THR 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C VAL 21 B VAL 22 1_555 B N MSE 22 B MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 B C MSE 22 B MSE 23 1_555 B N VAL 23 B VAL 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale13 B C VAL 47 B VAL 48 1_555 B N MSE 48 B MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 B C MSE 48 B MSE 49 1_555 B N THR 49 B THR 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 B C LEU 159 B LEU 160 1_555 B N MSE 160 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale16 B C MSE 160 B MSE 161 1_555 B N LEU 161 B LEU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 B C SER 308 B SER 309 1_555 B N MSE 309 B MSE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale18 B C MSE 309 B MSE 310 1_555 B N ASP 310 B ASP 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale19 B C SER 469 B SER 470 1_555 B N MSE 470 B MSE 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C MSE 470 B MSE 471 1_555 B N THR 471 B THR 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 6NAL _atom_sites.fract_transf_matrix[1][1] 0.007089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 A 1 501 476 PG4 PG4 . D 3 IMD A 1 502 477 IMD IMD . E 3 IMD B 1 501 476 IMD IMD . F 4 HOH A 1 601 4 HOH HOH . F 4 HOH A 2 602 556 HOH HOH . F 4 HOH A 3 603 530 HOH HOH . F 4 HOH A 4 604 549 HOH HOH . F 4 HOH A 5 605 514 HOH HOH . F 4 HOH A 6 606 548 HOH HOH . F 4 HOH A 7 607 497 HOH HOH . F 4 HOH A 8 608 559 HOH HOH . F 4 HOH A 9 609 506 HOH HOH . F 4 HOH A 10 610 547 HOH HOH . F 4 HOH A 11 611 555 HOH HOH . F 4 HOH A 12 612 486 HOH HOH . F 4 HOH A 13 613 518 HOH HOH . F 4 HOH A 14 614 538 HOH HOH . F 4 HOH A 15 615 7 HOH HOH . F 4 HOH A 16 616 481 HOH HOH . F 4 HOH A 17 617 478 HOH HOH . F 4 HOH A 18 618 523 HOH HOH . F 4 HOH A 19 619 511 HOH HOH . F 4 HOH A 20 620 557 HOH HOH . F 4 HOH A 21 621 534 HOH HOH . F 4 HOH A 22 622 3 HOH HOH . F 4 HOH A 23 623 512 HOH HOH . F 4 HOH A 24 624 508 HOH HOH . F 4 HOH A 25 625 533 HOH HOH . F 4 HOH A 26 626 527 HOH HOH . F 4 HOH A 27 627 536 HOH HOH . F 4 HOH A 28 628 532 HOH HOH . F 4 HOH A 29 629 560 HOH HOH . F 4 HOH A 30 630 558 HOH HOH . F 4 HOH A 31 631 520 HOH HOH . F 4 HOH A 32 632 543 HOH HOH . F 4 HOH A 33 633 484 HOH HOH . F 4 HOH A 34 634 516 HOH HOH . F 4 HOH A 35 635 531 HOH HOH . F 4 HOH A 36 636 483 HOH HOH . F 4 HOH A 37 637 500 HOH HOH . F 4 HOH A 38 638 482 HOH HOH . F 4 HOH A 39 639 525 HOH HOH . F 4 HOH A 40 640 553 HOH HOH . F 4 HOH A 41 641 521 HOH HOH . F 4 HOH A 42 642 493 HOH HOH . F 4 HOH A 43 643 513 HOH HOH . F 4 HOH A 44 644 5 HOH HOH . F 4 HOH A 45 645 542 HOH HOH . F 4 HOH A 46 646 510 HOH HOH . F 4 HOH A 47 647 1 HOH HOH . F 4 HOH A 48 648 502 HOH HOH . F 4 HOH A 49 649 488 HOH HOH . F 4 HOH A 50 650 498 HOH HOH . F 4 HOH A 51 651 485 HOH HOH . F 4 HOH A 52 652 491 HOH HOH . F 4 HOH A 53 653 550 HOH HOH . F 4 HOH A 54 654 492 HOH HOH . F 4 HOH A 55 655 504 HOH HOH . F 4 HOH A 56 656 544 HOH HOH . F 4 HOH A 57 657 494 HOH HOH . F 4 HOH A 58 658 528 HOH HOH . F 4 HOH A 59 659 507 HOH HOH . F 4 HOH A 60 660 496 HOH HOH . F 4 HOH A 61 661 489 HOH HOH . F 4 HOH A 62 662 540 HOH HOH . F 4 HOH A 63 663 501 HOH HOH . F 4 HOH A 64 664 480 HOH HOH . F 4 HOH A 65 665 499 HOH HOH . F 4 HOH A 66 666 495 HOH HOH . F 4 HOH A 67 667 546 HOH HOH . F 4 HOH A 68 668 503 HOH HOH . F 4 HOH A 69 669 479 HOH HOH . F 4 HOH A 70 670 487 HOH HOH . F 4 HOH A 71 671 552 HOH HOH . F 4 HOH A 72 672 537 HOH HOH . F 4 HOH A 73 673 519 HOH HOH . F 4 HOH A 74 674 541 HOH HOH . F 4 HOH A 75 675 529 HOH HOH . F 4 HOH A 76 676 535 HOH HOH . F 4 HOH A 77 677 524 HOH HOH . F 4 HOH A 78 678 515 HOH HOH . F 4 HOH A 79 679 554 HOH HOH . F 4 HOH A 80 680 539 HOH HOH . F 4 HOH A 81 681 517 HOH HOH . F 4 HOH A 82 682 505 HOH HOH . F 4 HOH A 83 683 526 HOH HOH . F 4 HOH A 84 684 522 HOH HOH . F 4 HOH A 85 685 545 HOH HOH . F 4 HOH A 86 686 551 HOH HOH . F 4 HOH A 87 687 509 HOH HOH . F 4 HOH A 88 688 490 HOH HOH . G 4 HOH B 1 601 6 HOH HOH . G 4 HOH B 2 602 496 HOH HOH . G 4 HOH B 3 603 568 HOH HOH . G 4 HOH B 4 604 572 HOH HOH . G 4 HOH B 5 605 585 HOH HOH . G 4 HOH B 6 606 570 HOH HOH . G 4 HOH B 7 607 515 HOH HOH . G 4 HOH B 8 608 567 HOH HOH . G 4 HOH B 9 609 527 HOH HOH . G 4 HOH B 10 610 545 HOH HOH . G 4 HOH B 11 611 549 HOH HOH . G 4 HOH B 12 612 520 HOH HOH . G 4 HOH B 13 613 512 HOH HOH . G 4 HOH B 14 614 490 HOH HOH . G 4 HOH B 15 615 573 HOH HOH . G 4 HOH B 16 616 499 HOH HOH . G 4 HOH B 17 617 519 HOH HOH . G 4 HOH B 18 618 574 HOH HOH . G 4 HOH B 19 619 586 HOH HOH . G 4 HOH B 20 620 477 HOH HOH . G 4 HOH B 21 621 553 HOH HOH . G 4 HOH B 22 622 479 HOH HOH . G 4 HOH B 23 623 482 HOH HOH . G 4 HOH B 24 624 563 HOH HOH . G 4 HOH B 25 625 493 HOH HOH . G 4 HOH B 26 626 579 HOH HOH . G 4 HOH B 27 627 569 HOH HOH . G 4 HOH B 28 628 562 HOH HOH . G 4 HOH B 29 629 571 HOH HOH . G 4 HOH B 30 630 485 HOH HOH . G 4 HOH B 31 631 576 HOH HOH . G 4 HOH B 32 632 558 HOH HOH . G 4 HOH B 33 633 551 HOH HOH . G 4 HOH B 34 634 492 HOH HOH . G 4 HOH B 35 635 488 HOH HOH . G 4 HOH B 36 636 555 HOH HOH . G 4 HOH B 37 637 580 HOH HOH . G 4 HOH B 38 638 513 HOH HOH . G 4 HOH B 39 639 511 HOH HOH . G 4 HOH B 40 640 507 HOH HOH . G 4 HOH B 41 641 525 HOH HOH . G 4 HOH B 42 642 478 HOH HOH . G 4 HOH B 43 643 522 HOH HOH . G 4 HOH B 44 644 534 HOH HOH . G 4 HOH B 45 645 544 HOH HOH . G 4 HOH B 46 646 575 HOH HOH . G 4 HOH B 47 647 543 HOH HOH . G 4 HOH B 48 648 498 HOH HOH . G 4 HOH B 49 649 505 HOH HOH . G 4 HOH B 50 650 528 HOH HOH . G 4 HOH B 51 651 2 HOH HOH . G 4 HOH B 52 652 559 HOH HOH . G 4 HOH B 53 653 540 HOH HOH . G 4 HOH B 54 654 506 HOH HOH . G 4 HOH B 55 655 486 HOH HOH . G 4 HOH B 56 656 508 HOH HOH . G 4 HOH B 57 657 546 HOH HOH . G 4 HOH B 58 658 480 HOH HOH . G 4 HOH B 59 659 547 HOH HOH . G 4 HOH B 60 660 537 HOH HOH . G 4 HOH B 61 661 530 HOH HOH . G 4 HOH B 62 662 489 HOH HOH . G 4 HOH B 63 663 495 HOH HOH . G 4 HOH B 64 664 541 HOH HOH . G 4 HOH B 65 665 517 HOH HOH . G 4 HOH B 66 666 521 HOH HOH . G 4 HOH B 67 667 503 HOH HOH . G 4 HOH B 68 668 552 HOH HOH . G 4 HOH B 69 669 514 HOH HOH . G 4 HOH B 70 670 501 HOH HOH . G 4 HOH B 71 671 588 HOH HOH . G 4 HOH B 72 672 542 HOH HOH . G 4 HOH B 73 673 523 HOH HOH . G 4 HOH B 74 674 581 HOH HOH . G 4 HOH B 75 675 491 HOH HOH . G 4 HOH B 76 676 509 HOH HOH . G 4 HOH B 77 677 481 HOH HOH . G 4 HOH B 78 678 483 HOH HOH . G 4 HOH B 79 679 556 HOH HOH . G 4 HOH B 80 680 484 HOH HOH . G 4 HOH B 81 681 536 HOH HOH . G 4 HOH B 82 682 539 HOH HOH . G 4 HOH B 83 683 524 HOH HOH . G 4 HOH B 84 684 516 HOH HOH . G 4 HOH B 85 685 550 HOH HOH . G 4 HOH B 86 686 532 HOH HOH . G 4 HOH B 87 687 497 HOH HOH . G 4 HOH B 88 688 535 HOH HOH . G 4 HOH B 89 689 500 HOH HOH . G 4 HOH B 90 690 487 HOH HOH . G 4 HOH B 91 691 584 HOH HOH . G 4 HOH B 92 692 502 HOH HOH . G 4 HOH B 93 693 565 HOH HOH . G 4 HOH B 94 694 529 HOH HOH . G 4 HOH B 95 695 577 HOH HOH . G 4 HOH B 96 696 557 HOH HOH . G 4 HOH B 97 697 578 HOH HOH . G 4 HOH B 98 698 560 HOH HOH . G 4 HOH B 99 699 504 HOH HOH . G 4 HOH B 100 700 538 HOH HOH . G 4 HOH B 101 701 587 HOH HOH . G 4 HOH B 102 702 554 HOH HOH . G 4 HOH B 103 703 561 HOH HOH . G 4 HOH B 104 704 494 HOH HOH . G 4 HOH B 105 705 510 HOH HOH . G 4 HOH B 106 706 533 HOH HOH . G 4 HOH B 107 707 566 HOH HOH . G 4 HOH B 108 708 518 HOH HOH . G 4 HOH B 109 709 582 HOH HOH . G 4 HOH B 110 710 564 HOH HOH . G 4 HOH B 111 711 526 HOH HOH . G 4 HOH B 112 712 583 HOH HOH . G 4 HOH B 113 713 531 HOH HOH . G 4 HOH B 114 714 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 3 15.986 31.718 27.589 1 63.08 ? N1 IMD 502 A 1 HETATM 2 C C2 IMD . . . D 3 15.249 32.643 28.279 1 57.86 ? C2 IMD 502 A 1 HETATM 3 N N3 IMD . . . D 3 16.024 33.164 29.27 1 62.19 ? N3 IMD 502 A 1 HETATM 4 C C4 IMD . . . D 3 17.253 32.565 29.195 1 51.22 ? C4 IMD 502 A 1 HETATM 5 C C5 IMD . . . D 3 17.244 31.649 28.125 1 38.92 ? C5 IMD 502 A 1 HETATM 6 H HN1 IMD . . . D 3 15.663 31.189 26.83 1 75.79 ? HN1 IMD 502 A 1 HETATM 7 H H2 IMD . . . D 3 14.319 32.89 28.091 1 69.52 ? H2 IMD 502 A 1 HETATM 8 H HN3 IMD . . . D 3 15.751 33.845 29.92 1 74.72 ? HN3 IMD 502 A 1 HETATM 9 H H4 IMD . . . D 3 18.013 32.743 29.787 1 61.55 ? H4 IMD 502 A 1 HETATM 10 H H5 IMD . . . D 3 17.984 31.081 27.826 1 46.8 ? H5 IMD 502 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #