data_6NAS # _model_server_result.job_id 8MKH7vBZt6pk-lFkDQLUAw _model_server_result.datetime_utc '2024-11-16 04:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":400}' # _entry.id 6NAS # _exptl.entry_id 6NAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NAS _cell.length_a 103.83 _cell.length_b 114.89 _cell.length_c 132.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C KKD 1 A KKD 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D CA CA . A CA 400 1_555 E O3G ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 D CA CA . A CA 400 1_555 E O1B ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6NAS _atom_sites.fract_transf_matrix[1][1] 0.009631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 400 400 CA CA . E 5 ATP A 1 401 401 ATP ATP . F 6 LAB A 1 402 402 LAB LAB . G 7 GOL A 1 403 403 GOL GOL . H 7 GOL A 1 404 404 GOL GOL . I 8 ACO N 1 400 400 ACO ACO . J 9 MES N 1 401 401 MES MES . K 7 GOL N 1 402 402 GOL GOL . L 10 HOH A 1 501 501 HOH HOH . L 10 HOH A 2 502 502 HOH HOH . L 10 HOH A 3 503 503 HOH HOH . L 10 HOH A 4 504 504 HOH HOH . L 10 HOH A 5 505 505 HOH HOH . L 10 HOH A 6 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . I 8 -31.068 -44.892 68.125 1 31.69 ? N1A ACO 400 N 1 HETATM 2 C C2A ACO . . . I 8 -30.658 -44.793 69.412 1 28.24 ? C2A ACO 400 N 1 HETATM 3 N N3A ACO . . . I 8 -29.524 -45.403 69.809 1 28.71 ? N3A ACO 400 N 1 HETATM 4 C C4A ACO . . . I 8 -28.798 -46.109 68.934 1 33.34 ? C4A ACO 400 N 1 HETATM 5 C C5A ACO . . . I 8 -29.201 -46.209 67.656 1 31.46 ? C5A ACO 400 N 1 HETATM 6 C C6A ACO . . . I 8 -30.356 -45.588 67.26 1 30.36 ? C6A ACO 400 N 1 HETATM 7 N N6A ACO . . . I 8 -30.914 -45.599 65.921 1 34.77 ? N6A ACO 400 N 1 HETATM 8 N N7A ACO . . . I 8 -28.303 -46.964 66.993 1 28.52 ? N7A ACO 400 N 1 HETATM 9 C C8A ACO . . . I 8 -27.359 -47.316 67.859 1 31.01 ? C8A ACO 400 N 1 HETATM 10 N N9A ACO . . . I 8 -27.668 -46.797 69.072 1 31.09 ? N9A ACO 400 N 1 HETATM 11 C C1B ACO . . . I 8 -26.927 -46.931 70.278 1 32.55 ? C1B ACO 400 N 1 HETATM 12 C C2B ACO . . . I 8 -26.644 -48.179 70.603 1 35.56 ? C2B ACO 400 N 1 HETATM 13 O O2B ACO . . . I 8 -27.671 -48.714 71.532 1 37.02 ? O2B ACO 400 N 1 HETATM 14 C C3B ACO . . . I 8 -25.282 -48.108 71.349 1 31.83 ? C3B ACO 400 N 1 HETATM 15 O O3B ACO . . . I 8 -25.417 -47.886 72.635 1 31.68 ? O3B ACO 400 N 1 HETATM 16 P P3B ACO . . . I 8 -24.066 -48.011 73.579 1 35.03 ? P3B ACO 400 N 1 HETATM 17 O O7A ACO . . . I 8 -23.894 -46.75 74.391 1 29.53 ? O7A ACO 400 N 1 HETATM 18 O O8A ACO . . . I 8 -24.21 -49.189 74.503 1 38.62 ? O8A ACO 400 N 1 HETATM 19 O O9A ACO . . . I 8 -22.836 -48.205 72.703 1 39.16 ? O9A ACO 400 N 1 HETATM 20 C C4B ACO . . . I 8 -24.539 -46.877 70.646 1 38.05 ? C4B ACO 400 N 1 HETATM 21 O O4B ACO . . . I 8 -25.462 -46.169 70.059 1 34.24 ? O4B ACO 400 N 1 HETATM 22 C C5B ACO . . . I 8 -23.529 -47.457 69.617 1 30.7 ? C5B ACO 400 N 1 HETATM 23 O O5B ACO . . . I 8 -24.26 -48.458 68.867 1 33.72 ? O5B ACO 400 N 1 HETATM 24 P P1A ACO . . . I 8 -23.643 -49.002 67.44 1 26.68 ? P1A ACO 400 N 1 HETATM 25 O O1A ACO . . . I 8 -23.479 -50.502 67.501 1 30.39 ? O1A ACO 400 N 1 HETATM 26 O O2A ACO . . . I 8 -22.323 -48.33 67.189 1 23.33 ? O2A ACO 400 N 1 HETATM 27 O O3A ACO . . . I 8 -24.725 -48.624 66.244 1 25.75 ? O3A ACO 400 N 1 HETATM 28 P P2A ACO . . . I 8 -24.472 -48.972 64.639 1 26.66 ? P2A ACO 400 N 1 HETATM 29 O O4A ACO . . . I 8 -23.271 -49.861 64.478 1 31.12 ? O4A ACO 400 N 1 HETATM 30 O O5A ACO . . . I 8 -25.693 -49.642 64.069 1 29.41 ? O5A ACO 400 N 1 HETATM 31 O O6A ACO . . . I 8 -24.217 -47.542 63.872 1 29.22 ? O6A ACO 400 N 1 HETATM 32 C CBP ACO . . . I 8 -25.549 -46.015 62.65 1 28.21 ? CBP ACO 400 N 1 HETATM 33 C CCP ACO . . . I 8 -25.223 -46.53 64.031 1 27.4 ? CCP ACO 400 N 1 HETATM 34 C CDP ACO . . . I 8 -26.652 -44.949 62.773 1 31.52 ? CDP ACO 400 N 1 HETATM 35 C CEP ACO . . . I 8 -24.224 -45.389 62.024 1 27 ? CEP ACO 400 N 1 HETATM 36 C CAP ACO . . . I 8 -25.986 -47.217 61.791 1 29.88 ? CAP ACO 400 N 1 HETATM 37 O OAP ACO . . . I 8 -27.152 -47.76 62.323 1 27.63 ? OAP ACO 400 N 1 HETATM 38 C C9P ACO . . . I 8 -26.269 -46.812 60.341 1 31.6 ? C9P ACO 400 N 1 HETATM 39 O O9P ACO . . . I 8 -25.396 -46.767 59.563 1 27.74 ? O9P ACO 400 N 1 HETATM 40 N N8P ACO . . . I 8 -27.624 -46.504 59.951 1 35.11 ? N8P ACO 400 N 1 HETATM 41 C C7P ACO . . . I 8 -27.932 -46.095 58.564 1 29.27 ? C7P ACO 400 N 1 HETATM 42 C C6P ACO . . . I 8 -27.154 -44.781 58.256 1 28.76 ? C6P ACO 400 N 1 HETATM 43 C C5P ACO . . . I 8 -27.686 -43.609 59.19 1 38.13 ? C5P ACO 400 N 1 HETATM 44 O O5P ACO . . . I 8 -28.766 -43.713 59.669 1 38.66 ? O5P ACO 400 N 1 HETATM 45 N N4P ACO . . . I 8 -26.83 -42.424 59.435 1 38.77 ? N4P ACO 400 N 1 HETATM 46 C C3P ACO . . . I 8 -27.247 -41.28 60.275 1 34.89 ? C3P ACO 400 N 1 HETATM 47 C C2P ACO . . . I 8 -28.726 -41.041 60.047 1 45.37 ? C2P ACO 400 N 1 HETATM 48 S S1P ACO . . . I 8 -29.24 -39.298 60.032 1 52.08 ? S1P ACO 400 N 1 HETATM 49 C C ACO . . . I 8 -31.03 -39.365 59.491 0.3 45.75 ? C ACO 400 N 1 HETATM 50 O O ACO . . . I 8 -31.562 -38.403 59.113 0.3 49.59 ? O ACO 400 N 1 HETATM 51 C CH3 ACO . . . I 8 -31.863 -40.679 59.556 0.3 42.86 ? CH3 ACO 400 N 1 HETATM 52 H H2A ACO . . . I 8 -31.223 -44.243 70.098 1 33.89 ? H2A ACO 400 N 1 HETATM 53 H H61A ACO . . . I 8 -30.769 -46.389 65.322 1 41.72 ? H61A ACO 400 N 1 HETATM 54 H H62A ACO . . . I 8 -31.442 -44.823 65.601 1 41.72 ? H62A ACO 400 N 1 HETATM 55 H H8A ACO . . . I 8 -26.488 -47.916 67.634 1 37.21 ? H8A ACO 400 N 1 HETATM 56 H H1B ACO . . . I 8 -27.491 -46.532 71.094 1 39.06 ? H1B ACO 400 N 1 HETATM 57 H H2B ACO . . . I 8 -26.567 -48.792 69.695 1 42.67 ? H2B ACO 400 N 1 HETATM 58 H HO2A ACO . . . I 8 -27.959 -49.55 71.224 1 44.42 ? HO2A ACO 400 N 1 HETATM 59 H H3B ACO . . . I 8 -24.745 -49.049 71.222 1 38.19 ? H3B ACO 400 N 1 HETATM 60 H H4B ACO . . . I 8 -24.058 -46.26 71.357 1 45.67 ? H4B ACO 400 N 1 HETATM 61 H H51A ACO . . . I 8 -23.174 -46.679 68.96 1 36.84 ? H51A ACO 400 N 1 HETATM 62 H H52A ACO . . . I 8 -22.69 -47.907 70.127 1 36.84 ? H52A ACO 400 N 1 HETATM 63 H H121 ACO . . . I 8 -26.112 -46.958 64.493 1 32.88 ? H121 ACO 400 N 1 HETATM 64 H H122 ACO . . . I 8 -24.844 -45.722 64.655 1 32.88 ? H122 ACO 400 N 1 HETATM 65 H H131 ACO . . . I 8 -27.029 -44.685 61.759 1 37.83 ? H131 ACO 400 N 1 HETATM 66 H H132 ACO . . . I 8 -27.49 -45.35 63.386 1 37.83 ? H132 ACO 400 N 1 HETATM 67 H H133 ACO . . . I 8 -26.237 -44.04 63.262 1 37.83 ? H133 ACO 400 N 1 HETATM 68 H H141 ACO . . . I 8 -23.43 -46.096 62.097 1 32.4 ? H141 ACO 400 N 1 HETATM 69 H H142 ACO . . . I 8 -24.395 -45.149 61 1 32.4 ? H142 ACO 400 N 1 HETATM 70 H H143 ACO . . . I 8 -23.964 -44.504 62.559 1 32.4 ? H143 ACO 400 N 1 HETATM 71 H H10 ACO . . . I 8 -25.17 -47.939 61.796 1 35.85 ? H10 ACO 400 N 1 HETATM 72 H HO1 ACO . . . I 8 -26.941 -48.518 62.843 1 33.16 ? HO1 ACO 400 N 1 HETATM 73 H HN8 ACO . . . I 8 -28.379 -46.569 60.641 1 42.14 ? HN8 ACO 400 N 1 HETATM 74 H H71 ACO . . . I 8 -27.625 -46.87 57.877 1 35.12 ? H71 ACO 400 N 1 HETATM 75 H H72 ACO . . . I 8 -28.994 -45.921 58.461 1 35.12 ? H72 ACO 400 N 1 HETATM 76 H H61 ACO . . . I 8 -26.099 -44.94 58.44 1 34.51 ? H61 ACO 400 N 1 HETATM 77 H H62 ACO . . . I 8 -27.302 -44.513 57.219 1 34.51 ? H62 ACO 400 N 1 HETATM 78 H HN4 ACO . . . I 8 -25.919 -42.395 59.009 1 46.52 ? HN4 ACO 400 N 1 HETATM 79 H H31 ACO . . . I 8 -27.066 -41.511 61.34 1 41.87 ? H31 ACO 400 N 1 HETATM 80 H H32 ACO . . . I 8 -26.675 -40.378 59.992 1 41.87 ? H32 ACO 400 N 1 HETATM 81 H H21 ACO . . . I 8 -29.273 -41.548 60.841 1 54.44 ? H21 ACO 400 N 1 HETATM 82 H H22 ACO . . . I 8 -28.991 -41.48 59.087 1 54.44 ? H22 ACO 400 N 1 HETATM 83 H HH31 ACO . . . I 8 -31.306 -41.499 59.049 0.3 51.43 ? HH31 ACO 400 N 1 HETATM 84 H HH32 ACO . . . I 8 -32.041 -40.956 60.619 0.3 51.43 ? HH32 ACO 400 N 1 HETATM 85 H HH33 ACO . . . I 8 -32.841 -40.527 59.046 0.3 51.43 ? HH33 ACO 400 N 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 85 #