data_6NAS
#
_model_server_result.job_id            NtobDbkbJi2W5EHW_tp8vQ 
_model_server_result.datetime_utc      '2024-11-16 04:31:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nas 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    6NAS 
#
_exptl.entry_id    6NAS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NAS 
_cell.length_a            103.83 
_cell.length_b            114.89 
_cell.length_c            132.271 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NAS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C KKD 1 A KKD 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 D CA CA . A CA 400 1_555 E O3G ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 D CA CA . A CA 400 1_555 E O1B ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 161 n n 
PG O2G ATP sing 162 n n 
PG O3G ATP sing 163 n n 
PG O3B ATP sing 164 n n 
O2G HOG2 ATP sing 165 n n 
O3G HOG3 ATP sing 166 n n 
PB O1B ATP doub 167 n n 
PB O2B ATP sing 168 n n 
PB O3B ATP sing 169 n n 
PB O3A ATP sing 170 n n 
O2B HOB2 ATP sing 171 n n 
PA O1A ATP doub 172 n n 
PA O2A ATP sing 173 n n 
PA O3A ATP sing 174 n n 
PA O5' ATP sing 175 n n 
O2A HOA2 ATP sing 176 n n 
O5' C5' ATP sing 177 n n 
C5' C4' ATP sing 178 n n 
C5' "H5'1" ATP sing 179 n n 
C5' "H5'2" ATP sing 180 n n 
C4' O4' ATP sing 181 n n 
C4' C3' ATP sing 182 n n 
C4' H4' ATP sing 183 n n 
O4' C1' ATP sing 184 n n 
C3' O3' ATP sing 185 n n 
C3' C2' ATP sing 186 n n 
C3' H3' ATP sing 187 n n 
O3' HO3' ATP sing 188 n n 
C2' O2' ATP sing 189 n n 
C2' C1' ATP sing 190 n n 
C2' H2' ATP sing 191 n n 
O2' HO2' ATP sing 192 n n 
C1' N9 ATP sing 193 n n 
C1' H1' ATP sing 194 n n 
N9 C8 ATP sing 195 n y 
N9 C4 ATP sing 196 n y 
C8 N7 ATP doub 197 n y 
C8 H8 ATP sing 198 n n 
N7 C5 ATP sing 199 n y 
C5 C6 ATP sing 200 n y 
C5 C4 ATP doub 201 n y 
C6 N6 ATP sing 202 n n 
C6 N1 ATP doub 203 n y 
N6 HN61 ATP sing 204 n n 
N6 HN62 ATP sing 205 n n 
N1 C2 ATP sing 206 n y 
C2 N3 ATP doub 207 n y 
C2 H2 ATP sing 208 n n 
N3 C4 ATP sing 209 n y 
#
_atom_sites.entry_id                     6NAS 
_atom_sites.fract_transf_matrix[1][1]    0.009631 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008704 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00756 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 400 400 CA CA . 
E 5 ATP A 1 401 401 ATP ATP . 
F 6 LAB A 1 402 402 LAB LAB . 
G 7 GOL A 1 403 403 GOL GOL . 
H 7 GOL A 1 404 404 GOL GOL . 
I 8 ACO N 1 400 400 ACO ACO . 
J 9 MES N 1 401 401 MES MES . 
K 7 GOL N 1 402 402 GOL GOL . 
L 10 HOH A 1 501 501 HOH HOH . 
L 10 HOH A 2 502 502 HOH HOH . 
L 10 HOH A 3 503 503 HOH HOH . 
L 10 HOH A 4 504 504 HOH HOH . 
L 10 HOH A 5 505 505 HOH HOH . 
L 10 HOH A 6 506 506 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 5 -20.185 -20.569 20.542 1 28.21 ? PG ATP 401 A 1 
HETATM 2 O O1G ATP . . . E 5 -19.575 -19.667 19.491 1 23.51 ? O1G ATP 401 A 1 
HETATM 3 O O2G ATP . . . E 5 -21.689 -20.712 20.466 1 23.92 ? O2G ATP 401 A 1 
HETATM 4 O O3G ATP . . . E 5 -19.667 -20.278 21.926 1 36.76 ? O3G ATP 401 A 1 
HETATM 5 P PB ATP . . . E 5 -18.639 -22.899 21.134 1 20.54 ? PB ATP 401 A 1 
HETATM 6 O O1B ATP . . . E 5 -18.747 -22.441 22.576 1 26.91 ? O1B ATP 401 A 1 
HETATM 7 O O2B ATP . . . E 5 -18.893 -24.356 20.818 1 23.23 ? O2B ATP 401 A 1 
HETATM 8 O O3B ATP . . . E 5 -19.622 -22.038 20.177 1 25.95 ? O3B ATP 401 A 1 
HETATM 9 P PA ATP . . . E 5 -15.835 -22.89 21.402 1 21.32 ? PA ATP 401 A 1 
HETATM 10 O O1A ATP . . . E 5 -15.497 -21.727 22.305 1 24.07 ? O1A ATP 401 A 1 
HETATM 11 O O2A ATP . . . E 5 -15.973 -24.275 21.996 1 22.13 ? O2A ATP 401 A 1 
HETATM 12 O O3A ATP . . . E 5 -17.173 -22.508 20.587 1 22.19 ? O3A ATP 401 A 1 
HETATM 13 O O5' ATP . . . E 5 -14.703 -22.923 20.256 1 25.02 ? O5' ATP 401 A 1 
HETATM 14 C C5' ATP . . . E 5 -14.813 -23.796 19.132 1 25.21 ? C5' ATP 401 A 1 
HETATM 15 C C4' ATP . . . E 5 -14.154 -23.09 17.966 1 26.04 ? C4' ATP 401 A 1 
HETATM 16 O O4' ATP . . . E 5 -12.843 -22.658 18.387 1 21.87 ? O4' ATP 401 A 1 
HETATM 17 C C3' ATP . . . E 5 -13.99 -23.941 16.706 1 29.46 ? C3' ATP 401 A 1 
HETATM 18 O O3' ATP . . . E 5 -14.579 -23.254 15.605 1 25.54 ? O3' ATP 401 A 1 
HETATM 19 C C2' ATP . . . E 5 -12.482 -24.087 16.505 1 25.46 ? C2' ATP 401 A 1 
HETATM 20 O O2' ATP . . . E 5 -12.102 -23.953 15.158 1 30.09 ? O2' ATP 401 A 1 
HETATM 21 C C1' ATP . . . E 5 -11.884 -22.956 17.36 1 29.42 ? C1' ATP 401 A 1 
HETATM 22 N N9 ATP . . . E 5 -10.582 -23.306 17.928 1 28.43 ? N9 ATP 401 A 1 
HETATM 23 C C8 ATP . . . E 5 -10.348 -24.224 18.873 1 28.14 ? C8 ATP 401 A 1 
HETATM 24 N N7 ATP . . . E 5 -9.013 -24.28 19.142 1 29.05 ? N7 ATP 401 A 1 
HETATM 25 C C5 ATP . . . E 5 -8.395 -23.383 18.363 1 26.32 ? C5 ATP 401 A 1 
HETATM 26 C C6 ATP . . . E 5 -7.007 -22.921 18.135 1 26.14 ? C6 ATP 401 A 1 
HETATM 27 N N6 ATP . . . E 5 -5.964 -23.446 18.821 1 25.23 ? N6 ATP 401 A 1 
HETATM 28 N N1 ATP . . . E 5 -6.807 -21.957 17.221 1 29.95 ? N1 ATP 401 A 1 
HETATM 29 C C2 ATP . . . E 5 -7.815 -21.406 16.515 1 28.79 ? C2 ATP 401 A 1 
HETATM 30 N N3 ATP . . . E 5 -9.1 -21.776 16.67 1 21.41 ? N3 ATP 401 A 1 
HETATM 31 C C4 ATP . . . E 5 -9.444 -22.738 17.559 1 22.34 ? C4 ATP 401 A 1 
HETATM 32 H "H5'1" ATP . . . E 5 -15.861 -24.005 18.91 1 30.25 ? "H5'1" ATP 401 A 1 
HETATM 33 H "H5'2" ATP . . . E 5 -14.316 -24.747 19.335 1 30.25 ? "H5'2" ATP 401 A 1 
HETATM 34 H H4' ATP . . . E 5 -14.817 -22.256 17.695 1 31.24 ? H4' ATP 401 A 1 
HETATM 35 H H3' ATP . . . E 5 -14.478 -24.922 16.785 1 35.35 ? H3' ATP 401 A 1 
HETATM 36 H HO3' ATP . . . E 5 -14.348 -23.706 14.782 1 30.65 ? HO3' ATP 401 A 1 
HETATM 37 H H2' ATP . . . E 5 -12.127 -25.086 16.794 1 30.55 ? H2' ATP 401 A 1 
HETATM 38 H HO2' ATP . . . E 5 -12.438 -24.706 14.652 1 36.1 ? HO2' ATP 401 A 1 
HETATM 39 H H1' ATP . . . E 5 -11.698 -22.083 16.719 1 35.3 ? H1' ATP 401 A 1 
HETATM 40 H H8 ATP . . . E 5 -11.105 -24.832 19.352 1 33.77 ? H8 ATP 401 A 1 
HETATM 41 H HN61 ATP . . . E 5 -5.028 -23.108 18.643 1 30.28 ? HN61 ATP 401 A 1 
HETATM 42 H HN62 ATP . . . E 5 -6.118 -24.171 19.509 1 30.28 ? HN62 ATP 401 A 1 
HETATM 43 H H2 ATP . . . E 5 -7.581 -20.634 15.793 1 34.55 ? H2 ATP 401 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#