data_6NAS
#
_model_server_result.job_id            fnVO8OefdFYWpPXeZqku2Q 
_model_server_result.datetime_utc      '2024-11-16 04:47:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nas 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    6NAS 
#
_exptl.entry_id    6NAS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.513 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LATRUNCULIN B' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NAS 
_cell.length_a            103.83 
_cell.length_b            114.89 
_cell.length_c            132.271 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NAS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C KKD 1 A KKD 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 D CA CA . A CA 400 1_555 E O3G ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 D CA CA . A CA 400 1_555 E O1B ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
#
_chem_comp.formula           'C20 H29 N O5 S' 
_chem_comp.formula_weight    395.513 
_chem_comp.id                LAB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LATRUNCULIN B' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C18 LAB doub 369 n n 
C18 N1 LAB sing 370 n n 
C18 S1 LAB sing 371 n n 
N1 C16 LAB sing 372 n n 
N1 HN1 LAB sing 373 n n 
C16 C15 LAB sing 374 n n 
C16 C17 LAB sing 375 n n 
C16 H16 LAB sing 376 n n 
C17 S1 LAB sing 377 n n 
C17 H171 LAB sing 378 n n 
C17 H172 LAB sing 379 n n 
C15 O3 LAB sing 380 n n 
C15 C14 LAB sing 381 n n 
C15 O4 LAB sing 382 n n 
O4 HO4 LAB sing 383 n n 
C14 C13 LAB sing 384 n n 
C14 H141 LAB sing 385 n n 
C14 H142 LAB sing 386 n n 
C13 C12 LAB sing 387 n n 
C13 O2 LAB sing 388 n n 
C13 H13 LAB sing 389 n n 
O2 C1 LAB sing 390 n n 
C12 C11 LAB sing 391 n n 
C12 H121 LAB sing 392 n n 
C12 H122 LAB sing 393 n n 
C11 C10 LAB sing 394 n n 
C11 O3 LAB sing 395 n n 
C11 H11 LAB sing 396 n n 
C10 C9 LAB sing 397 n n 
C10 H101 LAB sing 398 n n 
C10 H102 LAB sing 399 n n 
C9 C8 LAB sing 400 n n 
C9 H91 LAB sing 401 n n 
C9 H92 LAB sing 402 n n 
C8 C7 LAB sing 403 n n 
C8 C20 LAB sing 404 n n 
C8 H8 LAB sing 405 n n 
C20 H201 LAB sing 406 n n 
C20 H202 LAB sing 407 n n 
C20 H203 LAB sing 408 n n 
C7 C6 LAB doub 409 z n 
C7 H7 LAB sing 410 n n 
C6 C5 LAB sing 411 n n 
C6 H6 LAB sing 412 n n 
C5 C4 LAB sing 413 n n 
C5 H51 LAB sing 414 n n 
C5 H52 LAB sing 415 n n 
C4 C3 LAB sing 416 n n 
C4 H41 LAB sing 417 n n 
C4 H42 LAB sing 418 n n 
C3 C2 LAB doub 419 z n 
C3 C19 LAB sing 420 n n 
C19 H191 LAB sing 421 n n 
C19 H192 LAB sing 422 n n 
C19 H193 LAB sing 423 n n 
C2 C1 LAB sing 424 n n 
C2 H2 LAB sing 425 n n 
C1 O1 LAB doub 426 n n 
#
_atom_sites.entry_id                     6NAS 
_atom_sites.fract_transf_matrix[1][1]    0.009631 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008704 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00756 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 400 400 CA CA . 
E 5 ATP A 1 401 401 ATP ATP . 
F 6 LAB A 1 402 402 LAB LAB . 
G 7 GOL A 1 403 403 GOL GOL . 
H 7 GOL A 1 404 404 GOL GOL . 
I 8 ACO N 1 400 400 ACO ACO . 
J 9 MES N 1 401 401 MES MES . 
K 7 GOL N 1 402 402 GOL GOL . 
L 10 HOH A 1 501 501 HOH HOH . 
L 10 HOH A 2 502 502 HOH HOH . 
L 10 HOH A 3 503 503 HOH HOH . 
L 10 HOH A 4 504 504 HOH HOH . 
L 10 HOH A 5 505 505 HOH HOH . 
L 10 HOH A 6 506 506 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 LAB . . . F 6 -14.341 -25.062 11.877 1 22.59 ? O5 LAB 402 A 1 
HETATM 2 C C18 LAB . . . F 6 -15.323 -25.737 11.971 1 24.61 ? C18 LAB 402 A 1 
HETATM 3 N N1 LAB . . . F 6 -16.157 -25.771 13.096 1 20.71 ? N1 LAB 402 A 1 
HETATM 4 C C16 LAB . . . F 6 -17.33 -27.03 12.904 1 27.32 ? C16 LAB 402 A 1 
HETATM 5 C C17 LAB . . . F 6 -17.391 -27.281 11.476 1 30.29 ? C17 LAB 402 A 1 
HETATM 6 S S1 LAB . . . F 6 -15.916 -26.765 10.839 1 31.92 ? S1 LAB 402 A 1 
HETATM 7 C C15 LAB . . . F 6 -16.982 -28.218 13.658 1 25.38 ? C15 LAB 402 A 1 
HETATM 8 O O4 LAB . . . F 6 -15.95 -28.921 13.041 1 29.52 ? O4 LAB 402 A 1 
HETATM 9 C C14 LAB . . . F 6 -16.479 -27.857 15.044 1 22.69 ? C14 LAB 402 A 1 
HETATM 10 C C13 LAB . . . F 6 -17.043 -28.53 16.212 1 26.67 ? C13 LAB 402 A 1 
HETATM 11 O O2 LAB . . . F 6 -16.026 -29.437 16.802 1 28.31 ? O2 LAB 402 A 1 
HETATM 12 C C12 LAB . . . F 6 -18.299 -29.39 16.005 1 25.02 ? C12 LAB 402 A 1 
HETATM 13 C C11 LAB . . . F 6 -18.112 -30.25 14.609 1 23.64 ? C11 LAB 402 A 1 
HETATM 14 O O3 LAB . . . F 6 -18.151 -29.11 13.592 1 27.04 ? O3 LAB 402 A 1 
HETATM 15 C C10 LAB . . . F 6 -19.092 -31.136 14.41 1 24.42 ? C10 LAB 402 A 1 
HETATM 16 C C9 LAB . . . F 6 -18.721 -32.085 13.137 1 22.73 ? C9 LAB 402 A 1 
HETATM 17 C C8 LAB . . . F 6 -17.429 -32.924 13.378 1 22.2 ? C8 LAB 402 A 1 
HETATM 18 C C20 LAB . . . F 6 -17.264 -33.936 12.254 1 28.17 ? C20 LAB 402 A 1 
HETATM 19 C C7 LAB . . . F 6 -17.566 -33.672 14.674 1 27.54 ? C7 LAB 402 A 1 
HETATM 20 C C6 LAB . . . F 6 -16.524 -33.51 15.858 1 26.16 ? C6 LAB 402 A 1 
HETATM 21 C C5 LAB . . . F 6 -15.278 -32.587 15.734 1 23.53 ? C5 LAB 402 A 1 
HETATM 22 C C4 LAB . . . F 6 -14.99 -32.025 17.189 1 24.75 ? C4 LAB 402 A 1 
HETATM 23 C C3 LAB . . . F 6 -13.618 -31.285 17.232 1 21.18 ? C3 LAB 402 A 1 
HETATM 24 C C19 LAB . . . F 6 -12.307 -32.092 17.271 1 19.03 ? C19 LAB 402 A 1 
HETATM 25 C C2 LAB . . . F 6 -13.529 -29.739 17.253 1 23.29 ? C2 LAB 402 A 1 
HETATM 26 C C1 LAB . . . F 6 -14.785 -28.82 17.227 1 22.87 ? C1 LAB 402 A 1 
HETATM 27 O O1 LAB . . . F 6 -14.732 -27.669 17.494 1 26.3 ? O1 LAB 402 A 1 
HETATM 28 H HN1 LAB . . . F 6 -16.086 -25.164 13.886 1 24.85 ? HN1 LAB 402 A 1 
HETATM 29 H H16 LAB . . . F 6 -18.29 -26.68 13.245 1 32.78 ? H16 LAB 402 A 1 
HETATM 30 H H171 LAB . . . F 6 -17.522 -28.341 11.293 1 36.34 ? H171 LAB 402 A 1 
HETATM 31 H H172 LAB . . . F 6 -18.202 -26.713 11.036 1 36.34 ? H172 LAB 402 A 1 
HETATM 32 H HO4 LAB . . . F 6 -15.38 -28.296 12.635 1 35.42 ? HO4 LAB 402 A 1 
HETATM 33 H H141 LAB . . . F 6 -15.422 -28.045 15.054 1 27.23 ? H141 LAB 402 A 1 
HETATM 34 H H142 LAB . . . F 6 -16.65 -26.805 15.176 1 27.23 ? H142 LAB 402 A 1 
HETATM 35 H H13 LAB . . . F 6 -17.307 -27.722 16.866 1 32.01 ? H13 LAB 402 A 1 
HETATM 36 H H121 LAB . . . F 6 -18.417 -30.081 16.851 1 30.03 ? H121 LAB 402 A 1 
HETATM 37 H H122 LAB . . . F 6 -19.182 -28.741 15.924 1 30.03 ? H122 LAB 402 A 1 
HETATM 38 H H11 LAB . . . F 6 -17.217 -30.851 14.573 1 28.37 ? H11 LAB 402 A 1 
HETATM 39 H H101 LAB . . . F 6 -20.017 -30.611 14.211 1 29.3 ? H101 LAB 402 A 1 
HETATM 40 H H102 LAB . . . F 6 -19.208 -31.749 15.294 1 29.3 ? H102 LAB 402 A 1 
HETATM 41 H H91 LAB . . . F 6 -19.547 -32.763 12.955 1 27.28 ? H91 LAB 402 A 1 
HETATM 42 H H92 LAB . . . F 6 -18.572 -31.457 12.266 1 27.28 ? H92 LAB 402 A 1 
HETATM 43 H H8 LAB . . . F 6 -16.581 -32.27 13.411 1 26.64 ? H8 LAB 402 A 1 
HETATM 44 H H201 LAB . . . F 6 -17.317 -33.427 11.299 1 33.8 ? H201 LAB 402 A 1 
HETATM 45 H H202 LAB . . . F 6 -16.304 -34.427 12.348 1 33.8 ? H202 LAB 402 A 1 
HETATM 46 H H203 LAB . . . F 6 -18.054 -34.674 12.313 1 33.8 ? H203 LAB 402 A 1 
HETATM 47 H H7 LAB . . . F 6 -18.406 -34.346 14.803 1 33.05 ? H7 LAB 402 A 1 
HETATM 48 H H6 LAB . . . F 6 -16.683 -34.054 16.773 1 31.39 ? H6 LAB 402 A 1 
HETATM 49 H H51 LAB . . . F 6 -14.428 -33.152 15.376 1 28.23 ? H51 LAB 402 A 1 
HETATM 50 H H52 LAB . . . F 6 -15.482 -31.773 15.052 1 28.23 ? H52 LAB 402 A 1 
HETATM 51 H H41 LAB . . . F 6 -15.774 -31.335 17.465 1 29.71 ? H41 LAB 402 A 1 
HETATM 52 H H42 LAB . . . F 6 -14.971 -32.848 17.89 1 29.71 ? H42 LAB 402 A 1 
HETATM 53 H H191 LAB . . . F 6 -11.861 -32.009 18.256 1 22.84 ? H191 LAB 402 A 1 
HETATM 54 H H192 LAB . . . F 6 -11.619 -31.702 16.53 1 22.84 ? H192 LAB 402 A 1 
HETATM 55 H H193 LAB . . . F 6 -12.517 -33.134 17.057 1 22.84 ? H193 LAB 402 A 1 
HETATM 56 H H2 LAB . . . F 6 -12.55 -29.278 17.288 1 27.95 ? H2 LAB 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           56 
#