data_6NAS # _model_server_result.job_id UUTtWsktw_PR7TSUEE116A _model_server_result.datetime_utc '2024-11-16 04:47:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 6NAS # _exptl.entry_id 6NAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NAS _cell.length_a 103.83 _cell.length_b 114.89 _cell.length_c 132.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C KKD 1 A KKD 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D CA CA . A CA 400 1_555 E O3G ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 D CA CA . A CA 400 1_555 E O1B ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 269 n n C1 C2 GOL sing 270 n n C1 H11 GOL sing 271 n n C1 H12 GOL sing 272 n n O1 HO1 GOL sing 273 n n C2 O2 GOL sing 274 n n C2 C3 GOL sing 275 n n C2 H2 GOL sing 276 n n O2 HO2 GOL sing 277 n n C3 O3 GOL sing 278 n n C3 H31 GOL sing 279 n n C3 H32 GOL sing 280 n n O3 HO3 GOL sing 281 n n # _atom_sites.entry_id 6NAS _atom_sites.fract_transf_matrix[1][1] 0.009631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 400 400 CA CA . E 5 ATP A 1 401 401 ATP ATP . F 6 LAB A 1 402 402 LAB LAB . G 7 GOL A 1 403 403 GOL GOL . H 7 GOL A 1 404 404 GOL GOL . I 8 ACO N 1 400 400 ACO ACO . J 9 MES N 1 401 401 MES MES . K 7 GOL N 1 402 402 GOL GOL . L 10 HOH A 1 501 501 HOH HOH . L 10 HOH A 2 502 502 HOH HOH . L 10 HOH A 3 503 503 HOH HOH . L 10 HOH A 4 504 504 HOH HOH . L 10 HOH A 5 505 505 HOH HOH . L 10 HOH A 6 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 7 -23.033 -52.016 52.752 1 42.81 ? C1 GOL 402 N 1 HETATM 2 O O1 GOL . . . K 7 -23.848 -52.506 53.792 1 46.48 ? O1 GOL 402 N 1 HETATM 3 C C2 GOL . . . K 7 -21.968 -53.097 52.481 1 44.86 ? C2 GOL 402 N 1 HETATM 4 O O2 GOL . . . K 7 -20.723 -52.725 52.994 1 46.83 ? O2 GOL 402 N 1 HETATM 5 C C3 GOL . . . K 7 -21.906 -53.289 50.948 1 40.52 ? C3 GOL 402 N 1 HETATM 6 O O3 GOL . . . K 7 -22.602 -54.478 50.658 1 48.12 ? O3 GOL 402 N 1 HETATM 7 H H11 GOL . . . K 7 -22.595 -51.181 52.981 1 51.37 ? H11 GOL 402 N 1 HETATM 8 H H12 GOL . . . K 7 -23.53 -51.84 51.937 1 51.37 ? H12 GOL 402 N 1 HETATM 9 H HO1 GOL . . . K 7 -24.424 -53.013 53.429 1 55.78 ? HO1 GOL 402 N 1 HETATM 10 H H2 GOL . . . K 7 -22.231 -53.925 52.913 1 53.83 ? H2 GOL 402 N 1 HETATM 11 H HO2 GOL . . . K 7 -20.183 -53.363 52.864 1 56.19 ? HO2 GOL 402 N 1 HETATM 12 H H31 GOL . . . K 7 -20.977 -53.309 50.671 1 48.62 ? H31 GOL 402 N 1 HETATM 13 H H32 GOL . . . K 7 -22.285 -52.506 50.518 1 48.62 ? H32 GOL 402 N 1 HETATM 14 H HO3 GOL . . . K 7 -22.496 -54.637 49.83 1 57.74 ? HO3 GOL 402 N 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #