data_6NAS # _model_server_result.job_id P2Mm0hNV9HNvI9p2MiODeg _model_server_result.datetime_utc '2024-11-16 04:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 6NAS # _exptl.entry_id 6NAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NAS _cell.length_a 103.83 _cell.length_b 114.89 _cell.length_c 132.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C KKD 1 A KKD 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D CA CA . A CA 400 1_555 E O3G ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 D CA CA . A CA 400 1_555 E O1B ATP . A ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 269 n n C1 C2 GOL sing 270 n n C1 H11 GOL sing 271 n n C1 H12 GOL sing 272 n n O1 HO1 GOL sing 273 n n C2 O2 GOL sing 274 n n C2 C3 GOL sing 275 n n C2 H2 GOL sing 276 n n O2 HO2 GOL sing 277 n n C3 O3 GOL sing 278 n n C3 H31 GOL sing 279 n n C3 H32 GOL sing 280 n n O3 HO3 GOL sing 281 n n # _atom_sites.entry_id 6NAS _atom_sites.fract_transf_matrix[1][1] 0.009631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 400 400 CA CA . E 5 ATP A 1 401 401 ATP ATP . F 6 LAB A 1 402 402 LAB LAB . G 7 GOL A 1 403 403 GOL GOL . H 7 GOL A 1 404 404 GOL GOL . I 8 ACO N 1 400 400 ACO ACO . J 9 MES N 1 401 401 MES MES . K 7 GOL N 1 402 402 GOL GOL . L 10 HOH A 1 501 501 HOH HOH . L 10 HOH A 2 502 502 HOH HOH . L 10 HOH A 3 503 503 HOH HOH . L 10 HOH A 4 504 504 HOH HOH . L 10 HOH A 5 505 505 HOH HOH . L 10 HOH A 6 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 -8.381 -32.891 0.106 1 41.59 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . H 7 -9.041 -34.119 0.296 1 44.11 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . H 7 -7.458 -33.065 -1.116 1 46.13 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . H 7 -8.173 -33.151 -2.304 1 50.6 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . H 7 -6.521 -31.842 -1.09 1 46.01 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . H 7 -6.478 -31.331 -2.4 1 46.02 ? O3 GOL 404 A 1 HETATM 7 H H11 GOL . . . H 7 -7.851 -32.629 0.875 1 49.9 ? H11 GOL 404 A 1 HETATM 8 H H12 GOL . . . H 7 -8.995 -32.158 -0.056 1 49.9 ? H12 GOL 404 A 1 HETATM 9 H HO1 GOL . . . H 7 -9.756 -34.086 -0.154 1 52.93 ? HO1 GOL 404 A 1 HETATM 10 H H2 GOL . . . H 7 -6.955 -33.891 -1.044 1 55.36 ? H2 GOL 404 A 1 HETATM 11 H HO2 GOL . . . H 7 -7.828 -32.605 -2.858 1 60.72 ? HO2 GOL 404 A 1 HETATM 12 H H31 GOL . . . H 7 -5.653 -32.119 -0.756 1 55.22 ? H31 GOL 404 A 1 HETATM 13 H H32 GOL . . . H 7 -6.854 -31.205 -0.439 1 55.22 ? H32 GOL 404 A 1 HETATM 14 H HO3 GOL . . . H 7 -6 -30.629 -2.381 1 55.22 ? HO3 GOL 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #