data_6NBA
#
_model_server_result.job_id            KcXuv5GjNMXitiWn-VadMQ 
_model_server_result.datetime_utc      '2024-11-23 19:41:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nba 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    6NBA 
#
_exptl.entry_id    6NBA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.22 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.25 
_cell.angle_gamma         90 
_cell.entry_id            6NBA 
_cell.length_a            68.551 
_cell.length_b            152.167 
_cell.length_c            83.771 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NBA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C11 H15 N2 O7 P' 
_chem_comp.formula_weight    318.22 
_chem_comp.id                P1T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP1 P P1T sing 237 n n 
OP1 HOP1 P1T sing 238 n n 
P OP2 P1T doub 239 n n 
P OP4 P1T sing 240 n n 
P OP3 P1T sing 241 n n 
OP3 HOP3 P1T sing 242 n n 
OP4 C5A P1T sing 243 n n 
C5A C5 P1T sing 244 n n 
C5A H5A1 P1T sing 245 n n 
C5A H5A2 P1T sing 246 n n 
C5 C4 P1T sing 247 n y 
C5 C6 P1T doub 248 n y 
C6 N1 P1T sing 249 n y 
C6 H6 P1T sing 250 n n 
N1 C2 P1T doub 251 n y 
C2 C3 P1T sing 252 n y 
C2 C2A P1T sing 253 n n 
C2A H2A1 P1T sing 254 n n 
C2A H2A2 P1T sing 255 n n 
C2A H2A3 P1T sing 256 n n 
C3 O3A P1T sing 257 n n 
C3 C4 P1T doub 258 n y 
O3A HO3A P1T sing 259 n n 
C4 C4A P1T sing 260 n n 
C4A N P1T sing 261 n n 
C4A H4A1 P1T sing 262 n n 
C4A H4A2 P1T sing 263 n n 
N CA P1T sing 264 n n 
N HN P1T sing 265 n n 
CA C P1T sing 266 n n 
CA CB P1T doub 267 n n 
CB HB1 P1T sing 268 n n 
CB HB2 P1T sing 269 n n 
C OXT P1T doub 270 n n 
C O P1T sing 271 n n 
O HO P1T sing 272 n n 
#
_atom_sites.entry_id                     6NBA 
_atom_sites.fract_transf_matrix[1][1]    0.014588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005968 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 P1T A 1 501 3 P1T P1T . 
F 2 P1T B 1 501 4 P1T P1T . 
G 2 P1T C 1 501 2 P1T P1T . 
H 2 P1T D 1 501 5 P1T P1T . 
I 3 HOH A 1 601 144 HOH HOH . 
I 3 HOH A 2 602 119 HOH HOH . 
I 3 HOH A 3 603 190 HOH HOH . 
I 3 HOH A 4 604 61 HOH HOH . 
I 3 HOH A 5 605 125 HOH HOH . 
I 3 HOH A 6 606 7 HOH HOH . 
I 3 HOH A 7 607 63 HOH HOH . 
I 3 HOH A 8 608 93 HOH HOH . 
I 3 HOH A 9 609 106 HOH HOH . 
I 3 HOH A 10 610 5 HOH HOH . 
I 3 HOH A 11 611 134 HOH HOH . 
I 3 HOH A 12 612 195 HOH HOH . 
I 3 HOH A 13 613 8 HOH HOH . 
I 3 HOH A 14 614 122 HOH HOH . 
I 3 HOH A 15 615 171 HOH HOH . 
I 3 HOH A 16 616 9 HOH HOH . 
I 3 HOH A 17 617 133 HOH HOH . 
I 3 HOH A 18 618 182 HOH HOH . 
I 3 HOH A 19 619 81 HOH HOH . 
I 3 HOH A 20 620 12 HOH HOH . 
I 3 HOH A 21 621 51 HOH HOH . 
I 3 HOH A 22 622 75 HOH HOH . 
I 3 HOH A 23 623 193 HOH HOH . 
I 3 HOH A 24 624 11 HOH HOH . 
I 3 HOH A 25 625 21 HOH HOH . 
I 3 HOH A 26 626 97 HOH HOH . 
I 3 HOH A 27 627 177 HOH HOH . 
I 3 HOH A 28 628 66 HOH HOH . 
I 3 HOH A 29 629 153 HOH HOH . 
I 3 HOH A 30 630 90 HOH HOH . 
I 3 HOH A 31 631 155 HOH HOH . 
I 3 HOH A 32 632 113 HOH HOH . 
I 3 HOH A 33 633 3 HOH HOH . 
I 3 HOH A 34 634 175 HOH HOH . 
I 3 HOH A 35 635 72 HOH HOH . 
I 3 HOH A 36 636 87 HOH HOH . 
I 3 HOH A 37 637 67 HOH HOH . 
I 3 HOH A 38 638 115 HOH HOH . 
I 3 HOH A 39 639 59 HOH HOH . 
I 3 HOH A 40 640 94 HOH HOH . 
I 3 HOH A 41 641 130 HOH HOH . 
I 3 HOH A 42 642 4 HOH HOH . 
I 3 HOH A 43 643 178 HOH HOH . 
I 3 HOH A 44 644 96 HOH HOH . 
I 3 HOH A 45 645 145 HOH HOH . 
I 3 HOH A 46 646 152 HOH HOH . 
I 3 HOH A 47 647 183 HOH HOH . 
I 3 HOH A 48 648 103 HOH HOH . 
J 3 HOH B 1 601 50 HOH HOH . 
J 3 HOH B 2 602 188 HOH HOH . 
J 3 HOH B 3 603 165 HOH HOH . 
J 3 HOH B 4 604 57 HOH HOH . 
J 3 HOH B 5 605 110 HOH HOH . 
J 3 HOH B 6 606 121 HOH HOH . 
J 3 HOH B 7 607 138 HOH HOH . 
J 3 HOH B 8 608 23 HOH HOH . 
J 3 HOH B 9 609 194 HOH HOH . 
J 3 HOH B 10 610 79 HOH HOH . 
J 3 HOH B 11 611 196 HOH HOH . 
J 3 HOH B 12 612 114 HOH HOH . 
J 3 HOH B 13 613 55 HOH HOH . 
J 3 HOH B 14 614 85 HOH HOH . 
J 3 HOH B 15 615 180 HOH HOH . 
J 3 HOH B 16 616 76 HOH HOH . 
J 3 HOH B 17 617 118 HOH HOH . 
J 3 HOH B 18 618 176 HOH HOH . 
J 3 HOH B 19 619 16 HOH HOH . 
J 3 HOH B 20 620 41 HOH HOH . 
J 3 HOH B 21 621 22 HOH HOH . 
J 3 HOH B 22 622 17 HOH HOH . 
J 3 HOH B 23 623 19 HOH HOH . 
J 3 HOH B 24 624 198 HOH HOH . 
J 3 HOH B 25 625 187 HOH HOH . 
J 3 HOH B 26 626 166 HOH HOH . 
J 3 HOH B 27 627 186 HOH HOH . 
J 3 HOH B 28 628 24 HOH HOH . 
J 3 HOH B 29 629 54 HOH HOH . 
J 3 HOH B 30 630 18 HOH HOH . 
J 3 HOH B 31 631 2 HOH HOH . 
J 3 HOH B 32 632 127 HOH HOH . 
J 3 HOH B 33 633 64 HOH HOH . 
J 3 HOH B 34 634 13 HOH HOH . 
J 3 HOH B 35 635 10 HOH HOH . 
J 3 HOH B 36 636 20 HOH HOH . 
J 3 HOH B 37 637 99 HOH HOH . 
J 3 HOH B 38 638 181 HOH HOH . 
J 3 HOH B 39 639 135 HOH HOH . 
J 3 HOH B 40 640 1 HOH HOH . 
J 3 HOH B 41 641 25 HOH HOH . 
J 3 HOH B 42 642 47 HOH HOH . 
J 3 HOH B 43 643 192 HOH HOH . 
J 3 HOH B 44 644 161 HOH HOH . 
J 3 HOH B 45 645 109 HOH HOH . 
K 3 HOH C 1 601 84 HOH HOH . 
K 3 HOH C 2 602 108 HOH HOH . 
K 3 HOH C 3 603 46 HOH HOH . 
K 3 HOH C 4 604 143 HOH HOH . 
K 3 HOH C 5 605 197 HOH HOH . 
K 3 HOH C 6 606 179 HOH HOH . 
K 3 HOH C 7 607 70 HOH HOH . 
K 3 HOH C 8 608 185 HOH HOH . 
K 3 HOH C 9 609 49 HOH HOH . 
K 3 HOH C 10 610 100 HOH HOH . 
K 3 HOH C 11 611 53 HOH HOH . 
K 3 HOH C 12 612 159 HOH HOH . 
K 3 HOH C 13 613 62 HOH HOH . 
K 3 HOH C 14 614 80 HOH HOH . 
K 3 HOH C 15 615 172 HOH HOH . 
K 3 HOH C 16 616 157 HOH HOH . 
K 3 HOH C 17 617 126 HOH HOH . 
K 3 HOH C 18 618 111 HOH HOH . 
K 3 HOH C 19 619 151 HOH HOH . 
K 3 HOH C 20 620 117 HOH HOH . 
K 3 HOH C 21 621 98 HOH HOH . 
K 3 HOH C 22 622 105 HOH HOH . 
K 3 HOH C 23 623 163 HOH HOH . 
K 3 HOH C 24 624 149 HOH HOH . 
K 3 HOH C 25 625 86 HOH HOH . 
K 3 HOH C 26 626 71 HOH HOH . 
K 3 HOH C 27 627 173 HOH HOH . 
K 3 HOH C 28 628 26 HOH HOH . 
K 3 HOH C 29 629 128 HOH HOH . 
K 3 HOH C 30 630 32 HOH HOH . 
K 3 HOH C 31 631 29 HOH HOH . 
K 3 HOH C 32 632 140 HOH HOH . 
K 3 HOH C 33 633 28 HOH HOH . 
K 3 HOH C 34 634 139 HOH HOH . 
K 3 HOH C 35 635 78 HOH HOH . 
K 3 HOH C 36 636 27 HOH HOH . 
K 3 HOH C 37 637 6 HOH HOH . 
K 3 HOH C 38 638 147 HOH HOH . 
K 3 HOH C 39 639 120 HOH HOH . 
K 3 HOH C 40 640 45 HOH HOH . 
K 3 HOH C 41 641 107 HOH HOH . 
K 3 HOH C 42 642 131 HOH HOH . 
K 3 HOH C 43 643 132 HOH HOH . 
K 3 HOH C 44 644 68 HOH HOH . 
L 3 HOH D 1 601 43 HOH HOH . 
L 3 HOH D 2 602 104 HOH HOH . 
L 3 HOH D 3 603 137 HOH HOH . 
L 3 HOH D 4 604 170 HOH HOH . 
L 3 HOH D 5 605 58 HOH HOH . 
L 3 HOH D 6 606 89 HOH HOH . 
L 3 HOH D 7 607 48 HOH HOH . 
L 3 HOH D 8 608 168 HOH HOH . 
L 3 HOH D 9 609 56 HOH HOH . 
L 3 HOH D 10 610 37 HOH HOH . 
L 3 HOH D 11 611 35 HOH HOH . 
L 3 HOH D 12 612 164 HOH HOH . 
L 3 HOH D 13 613 82 HOH HOH . 
L 3 HOH D 14 614 38 HOH HOH . 
L 3 HOH D 15 615 167 HOH HOH . 
L 3 HOH D 16 616 92 HOH HOH . 
L 3 HOH D 17 617 36 HOH HOH . 
L 3 HOH D 18 618 101 HOH HOH . 
L 3 HOH D 19 619 83 HOH HOH . 
L 3 HOH D 20 620 124 HOH HOH . 
L 3 HOH D 21 621 156 HOH HOH . 
L 3 HOH D 22 622 88 HOH HOH . 
L 3 HOH D 23 623 116 HOH HOH . 
L 3 HOH D 24 624 34 HOH HOH . 
L 3 HOH D 25 625 189 HOH HOH . 
L 3 HOH D 26 626 40 HOH HOH . 
L 3 HOH D 27 627 39 HOH HOH . 
L 3 HOH D 28 628 174 HOH HOH . 
L 3 HOH D 29 629 60 HOH HOH . 
L 3 HOH D 30 630 154 HOH HOH . 
L 3 HOH D 31 631 158 HOH HOH . 
L 3 HOH D 32 632 169 HOH HOH . 
L 3 HOH D 33 633 15 HOH HOH . 
L 3 HOH D 34 634 77 HOH HOH . 
L 3 HOH D 35 635 52 HOH HOH . 
L 3 HOH D 36 636 14 HOH HOH . 
L 3 HOH D 37 637 31 HOH HOH . 
L 3 HOH D 38 638 69 HOH HOH . 
L 3 HOH D 39 639 91 HOH HOH . 
L 3 HOH D 40 640 42 HOH HOH . 
L 3 HOH D 41 641 102 HOH HOH . 
L 3 HOH D 42 642 73 HOH HOH . 
L 3 HOH D 43 643 33 HOH HOH . 
L 3 HOH D 44 644 142 HOH HOH . 
L 3 HOH D 45 645 123 HOH HOH . 
L 3 HOH D 46 646 30 HOH HOH . 
L 3 HOH D 47 647 129 HOH HOH . 
L 3 HOH D 48 648 95 HOH HOH . 
L 3 HOH D 49 649 141 HOH HOH . 
L 3 HOH D 50 650 74 HOH HOH . 
L 3 HOH D 51 651 199 HOH HOH . 
L 3 HOH D 52 652 191 HOH HOH . 
L 3 HOH D 53 653 44 HOH HOH . 
L 3 HOH D 54 654 148 HOH HOH . 
L 3 HOH D 55 655 136 HOH HOH . 
L 3 HOH D 56 656 150 HOH HOH . 
L 3 HOH D 57 657 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP1 P1T . . . E 2 18.164 6.725 42.939 1 30.33 ? OP1 P1T 501 A 1 
HETATM 2 P P P1T . . . E 2 16.858 6.577 43.697 1 35.11 ? P P1T 501 A 1 
HETATM 3 O OP2 P1T . . . E 2 15.67 6.314 42.79 1 30.79 ? OP2 P1T 501 A 1 
HETATM 4 O OP3 P1T . . . E 2 16.616 7.711 44.676 1 36.89 ? OP3 P1T 501 A 1 
HETATM 5 O OP4 P1T . . . E 2 17.027 5.247 44.591 1 36.35 ? OP4 P1T 501 A 1 
HETATM 6 C C5A P1T . . . E 2 17.985 5.178 45.692 1 35.2 ? C5A P1T 501 A 1 
HETATM 7 C C5 P1T . . . E 2 18.47 3.77 45.841 1 34.98 ? C5 P1T 501 A 1 
HETATM 8 C C6 P1T . . . E 2 17.784 2.851 46.611 1 32.73 ? C6 P1T 501 A 1 
HETATM 9 N N1 P1T . . . E 2 18.179 1.577 46.765 1 35.1 ? N1 P1T 501 A 1 
HETATM 10 C C2 P1T . . . E 2 19.281 1.144 46.155 1 34.74 ? C2 P1T 501 A 1 
HETATM 11 C C2A P1T . . . E 2 19.702 -0.28 46.344 1 34.62 ? C2A P1T 501 A 1 
HETATM 12 C C3 P1T . . . E 2 20.035 2.005 45.351 1 34.71 ? C3 P1T 501 A 1 
HETATM 13 O O3A P1T . . . E 2 21.16 1.532 44.741 1 34.47 ? O3A P1T 501 A 1 
HETATM 14 C C4 P1T . . . E 2 19.631 3.334 45.189 1 37.01 ? C4 P1T 501 A 1 
HETATM 15 C C4A P1T . . . E 2 20.429 4.278 44.325 1 37.25 ? C4A P1T 501 A 1 
HETATM 16 N N P1T . . . E 2 21.649 3.66 43.822 1 38.48 ? N P1T 501 A 1 
HETATM 17 C CA P1T . . . E 2 22.513 4.225 42.962 1 40.27 ? CA P1T 501 A 1 
HETATM 18 C CB P1T . . . E 2 22.305 5.526 42.843 1 39.1 ? CB P1T 501 A 1 
HETATM 19 C C P1T . . . E 2 23.832 3.978 42.916 1 42.11 ? C P1T 501 A 1 
HETATM 20 O O P1T . . . E 2 24.365 3.285 43.782 1 42.83 ? O P1T 501 A 1 
HETATM 21 O OXT P1T . . . E 2 24.494 4.426 41.984 1 42.19 ? OXT P1T 501 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#