data_6NBP
#
_model_server_result.job_id            CohLz_u6t3P8qL5iUcF7ew 
_model_server_result.datetime_utc      '2024-11-28 02:41:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6NBP 
#
_exptl.entry_id    6NBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NBP 
_cell.length_a            75.928 
_cell.length_b            75.928 
_cell.length_c            87.591 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -29.197 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 154 A ILE 151 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc2 A O THR 195 A THR 192 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc3 A OG1 THR 195 A THR 192 1_555 D NA NA . A NA 303 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 F O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 F O HOH . A HOH 539 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? 
metalc ? metalc6 D NA NA . A NA 303 1_555 F O HOH . A HOH 596 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6NBP 
_atom_sites.fract_transf_matrix[1][1]    0.01317 
_atom_sites.fract_transf_matrix[1][2]    0.007604 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011417 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0FX A 1 301 310 0FX 0FX . 
C 3 FON A 1 302 311 FON FON . 
D 4 NA A 1 303 1 NA NA . 
E 5 PO4 A 1 304 1 PO4 PO4 . 
F 6 HOH A 1 401 242 HOH HOH . 
F 6 HOH A 2 402 224 HOH HOH . 
F 6 HOH A 3 403 31 HOH HOH . 
F 6 HOH A 4 404 255 HOH HOH . 
F 6 HOH A 5 405 220 HOH HOH . 
F 6 HOH A 6 406 225 HOH HOH . 
F 6 HOH A 7 407 205 HOH HOH . 
F 6 HOH A 8 408 215 HOH HOH . 
F 6 HOH A 9 409 189 HOH HOH . 
F 6 HOH A 10 410 43 HOH HOH . 
F 6 HOH A 11 411 187 HOH HOH . 
F 6 HOH A 12 412 212 HOH HOH . 
F 6 HOH A 13 413 280 HOH HOH . 
F 6 HOH A 14 414 258 HOH HOH . 
F 6 HOH A 15 415 92 HOH HOH . 
F 6 HOH A 16 416 250 HOH HOH . 
F 6 HOH A 17 417 81 HOH HOH . 
F 6 HOH A 18 418 188 HOH HOH . 
F 6 HOH A 19 419 276 HOH HOH . 
F 6 HOH A 20 420 112 HOH HOH . 
F 6 HOH A 21 421 33 HOH HOH . 
F 6 HOH A 22 422 321 HOH HOH . 
F 6 HOH A 23 423 288 HOH HOH . 
F 6 HOH A 24 424 44 HOH HOH . 
F 6 HOH A 25 425 52 HOH HOH . 
F 6 HOH A 26 426 139 HOH HOH . 
F 6 HOH A 27 427 323 HOH HOH . 
F 6 HOH A 28 428 91 HOH HOH . 
F 6 HOH A 29 429 254 HOH HOH . 
F 6 HOH A 30 430 29 HOH HOH . 
F 6 HOH A 31 431 227 HOH HOH . 
F 6 HOH A 32 432 190 HOH HOH . 
F 6 HOH A 33 433 230 HOH HOH . 
F 6 HOH A 34 434 226 HOH HOH . 
F 6 HOH A 35 435 228 HOH HOH . 
F 6 HOH A 36 436 38 HOH HOH . 
F 6 HOH A 37 437 269 HOH HOH . 
F 6 HOH A 38 438 305 HOH HOH . 
F 6 HOH A 39 439 145 HOH HOH . 
F 6 HOH A 40 440 244 HOH HOH . 
F 6 HOH A 41 441 71 HOH HOH . 
F 6 HOH A 42 442 78 HOH HOH . 
F 6 HOH A 43 443 103 HOH HOH . 
F 6 HOH A 44 444 59 HOH HOH . 
F 6 HOH A 45 445 90 HOH HOH . 
F 6 HOH A 46 446 300 HOH HOH . 
F 6 HOH A 47 447 135 HOH HOH . 
F 6 HOH A 48 448 94 HOH HOH . 
F 6 HOH A 49 449 39 HOH HOH . 
F 6 HOH A 50 450 101 HOH HOH . 
F 6 HOH A 51 451 140 HOH HOH . 
F 6 HOH A 52 452 137 HOH HOH . 
F 6 HOH A 53 453 19 HOH HOH . 
F 6 HOH A 54 454 64 HOH HOH . 
F 6 HOH A 55 455 105 HOH HOH . 
F 6 HOH A 56 456 28 HOH HOH . 
F 6 HOH A 57 457 54 HOH HOH . 
F 6 HOH A 58 458 56 HOH HOH . 
F 6 HOH A 59 459 42 HOH HOH . 
F 6 HOH A 60 460 24 HOH HOH . 
F 6 HOH A 61 461 68 HOH HOH . 
F 6 HOH A 62 462 13 HOH HOH . 
F 6 HOH A 63 463 207 HOH HOH . 
F 6 HOH A 64 464 58 HOH HOH . 
F 6 HOH A 65 465 50 HOH HOH . 
F 6 HOH A 66 466 266 HOH HOH . 
F 6 HOH A 67 467 132 HOH HOH . 
F 6 HOH A 68 468 75 HOH HOH . 
F 6 HOH A 69 469 322 HOH HOH . 
F 6 HOH A 70 470 200 HOH HOH . 
F 6 HOH A 71 471 123 HOH HOH . 
F 6 HOH A 72 472 85 HOH HOH . 
F 6 HOH A 73 473 257 HOH HOH . 
F 6 HOH A 74 474 7 HOH HOH . 
F 6 HOH A 75 475 315 HOH HOH . 
F 6 HOH A 76 476 6 HOH HOH . 
F 6 HOH A 77 477 61 HOH HOH . 
F 6 HOH A 78 478 326 HOH HOH . 
F 6 HOH A 79 479 27 HOH HOH . 
F 6 HOH A 80 480 294 HOH HOH . 
F 6 HOH A 81 481 173 HOH HOH . 
F 6 HOH A 82 482 17 HOH HOH . 
F 6 HOH A 83 483 30 HOH HOH . 
F 6 HOH A 84 484 267 HOH HOH . 
F 6 HOH A 85 485 14 HOH HOH . 
F 6 HOH A 86 486 106 HOH HOH . 
F 6 HOH A 87 487 159 HOH HOH . 
F 6 HOH A 88 488 16 HOH HOH . 
F 6 HOH A 89 489 278 HOH HOH . 
F 6 HOH A 90 490 98 HOH HOH . 
F 6 HOH A 91 491 260 HOH HOH . 
F 6 HOH A 92 492 1 HOH HOH . 
F 6 HOH A 93 493 3 HOH HOH . 
F 6 HOH A 94 494 313 HOH HOH . 
F 6 HOH A 95 495 243 HOH HOH . 
F 6 HOH A 96 496 303 HOH HOH . 
F 6 HOH A 97 497 62 HOH HOH . 
F 6 HOH A 98 498 22 HOH HOH . 
F 6 HOH A 99 499 47 HOH HOH . 
F 6 HOH A 100 500 5 HOH HOH . 
F 6 HOH A 101 501 79 HOH HOH . 
F 6 HOH A 102 502 37 HOH HOH . 
F 6 HOH A 103 503 104 HOH HOH . 
F 6 HOH A 104 504 201 HOH HOH . 
F 6 HOH A 105 505 151 HOH HOH . 
F 6 HOH A 106 506 316 HOH HOH . 
F 6 HOH A 107 507 196 HOH HOH . 
F 6 HOH A 108 508 246 HOH HOH . 
F 6 HOH A 109 509 40 HOH HOH . 
F 6 HOH A 110 510 36 HOH HOH . 
F 6 HOH A 111 511 88 HOH HOH . 
F 6 HOH A 112 512 89 HOH HOH . 
F 6 HOH A 113 513 195 HOH HOH . 
F 6 HOH A 114 514 264 HOH HOH . 
F 6 HOH A 115 515 26 HOH HOH . 
F 6 HOH A 116 516 117 HOH HOH . 
F 6 HOH A 117 517 32 HOH HOH . 
F 6 HOH A 118 518 279 HOH HOH . 
F 6 HOH A 119 519 108 HOH HOH . 
F 6 HOH A 120 520 86 HOH HOH . 
F 6 HOH A 121 521 213 HOH HOH . 
F 6 HOH A 122 522 304 HOH HOH . 
F 6 HOH A 123 523 10 HOH HOH . 
F 6 HOH A 124 524 256 HOH HOH . 
F 6 HOH A 125 525 76 HOH HOH . 
F 6 HOH A 126 526 57 HOH HOH . 
F 6 HOH A 127 527 130 HOH HOH . 
F 6 HOH A 128 528 233 HOH HOH . 
F 6 HOH A 129 529 287 HOH HOH . 
F 6 HOH A 130 530 248 HOH HOH . 
F 6 HOH A 131 531 18 HOH HOH . 
F 6 HOH A 132 532 231 HOH HOH . 
F 6 HOH A 133 533 281 HOH HOH . 
F 6 HOH A 134 534 116 HOH HOH . 
F 6 HOH A 135 535 4 HOH HOH . 
F 6 HOH A 136 536 46 HOH HOH . 
F 6 HOH A 137 537 65 HOH HOH . 
F 6 HOH A 138 538 109 HOH HOH . 
F 6 HOH A 139 539 124 HOH HOH . 
F 6 HOH A 140 540 48 HOH HOH . 
F 6 HOH A 141 541 20 HOH HOH . 
F 6 HOH A 142 542 77 HOH HOH . 
F 6 HOH A 143 543 120 HOH HOH . 
F 6 HOH A 144 544 286 HOH HOH . 
F 6 HOH A 145 545 253 HOH HOH . 
F 6 HOH A 146 546 35 HOH HOH . 
F 6 HOH A 147 547 314 HOH HOH . 
F 6 HOH A 148 548 165 HOH HOH . 
F 6 HOH A 149 549 15 HOH HOH . 
F 6 HOH A 150 550 142 HOH HOH . 
F 6 HOH A 151 551 301 HOH HOH . 
F 6 HOH A 152 552 234 HOH HOH . 
F 6 HOH A 153 553 277 HOH HOH . 
F 6 HOH A 154 554 66 HOH HOH . 
F 6 HOH A 155 555 51 HOH HOH . 
F 6 HOH A 156 556 291 HOH HOH . 
F 6 HOH A 157 557 41 HOH HOH . 
F 6 HOH A 158 558 138 HOH HOH . 
F 6 HOH A 159 559 25 HOH HOH . 
F 6 HOH A 160 560 147 HOH HOH . 
F 6 HOH A 161 561 95 HOH HOH . 
F 6 HOH A 162 562 82 HOH HOH . 
F 6 HOH A 163 563 191 HOH HOH . 
F 6 HOH A 164 564 218 HOH HOH . 
F 6 HOH A 165 565 271 HOH HOH . 
F 6 HOH A 166 566 199 HOH HOH . 
F 6 HOH A 167 567 141 HOH HOH . 
F 6 HOH A 168 568 292 HOH HOH . 
F 6 HOH A 169 569 60 HOH HOH . 
F 6 HOH A 170 570 113 HOH HOH . 
F 6 HOH A 171 571 309 HOH HOH . 
F 6 HOH A 172 572 55 HOH HOH . 
F 6 HOH A 173 573 34 HOH HOH . 
F 6 HOH A 174 574 67 HOH HOH . 
F 6 HOH A 175 575 163 HOH HOH . 
F 6 HOH A 176 576 247 HOH HOH . 
F 6 HOH A 177 577 53 HOH HOH . 
F 6 HOH A 178 578 74 HOH HOH . 
F 6 HOH A 179 579 121 HOH HOH . 
F 6 HOH A 180 580 23 HOH HOH . 
F 6 HOH A 181 581 73 HOH HOH . 
F 6 HOH A 182 582 148 HOH HOH . 
F 6 HOH A 183 583 193 HOH HOH . 
F 6 HOH A 184 584 232 HOH HOH . 
F 6 HOH A 185 585 210 HOH HOH . 
F 6 HOH A 186 586 295 HOH HOH . 
F 6 HOH A 187 587 311 HOH HOH . 
F 6 HOH A 188 588 238 HOH HOH . 
F 6 HOH A 189 589 208 HOH HOH . 
F 6 HOH A 190 590 178 HOH HOH . 
F 6 HOH A 191 591 21 HOH HOH . 
F 6 HOH A 192 592 182 HOH HOH . 
F 6 HOH A 193 593 325 HOH HOH . 
F 6 HOH A 194 594 63 HOH HOH . 
F 6 HOH A 195 595 175 HOH HOH . 
F 6 HOH A 196 596 217 HOH HOH . 
F 6 HOH A 197 597 302 HOH HOH . 
F 6 HOH A 198 598 241 HOH HOH . 
F 6 HOH A 199 599 87 HOH HOH . 
F 6 HOH A 200 600 259 HOH HOH . 
F 6 HOH A 201 601 273 HOH HOH . 
F 6 HOH A 202 602 312 HOH HOH . 
F 6 HOH A 203 603 262 HOH HOH . 
F 6 HOH A 204 604 49 HOH HOH . 
F 6 HOH A 205 605 184 HOH HOH . 
F 6 HOH A 206 606 290 HOH HOH . 
F 6 HOH A 207 607 133 HOH HOH . 
F 6 HOH A 208 608 209 HOH HOH . 
F 6 HOH A 209 609 263 HOH HOH . 
F 6 HOH A 210 610 119 HOH HOH . 
F 6 HOH A 211 611 240 HOH HOH . 
F 6 HOH A 212 612 93 HOH HOH . 
F 6 HOH A 213 613 115 HOH HOH . 
F 6 HOH A 214 614 149 HOH HOH . 
F 6 HOH A 215 615 283 HOH HOH . 
F 6 HOH A 216 616 252 HOH HOH . 
F 6 HOH A 217 617 317 HOH HOH . 
F 6 HOH A 218 618 198 HOH HOH . 
F 6 HOH A 219 619 69 HOH HOH . 
F 6 HOH A 220 620 206 HOH HOH . 
F 6 HOH A 221 621 270 HOH HOH . 
F 6 HOH A 222 622 239 HOH HOH . 
F 6 HOH A 223 623 237 HOH HOH . 
F 6 HOH A 224 624 185 HOH HOH . 
F 6 HOH A 225 625 160 HOH HOH . 
F 6 HOH A 226 626 235 HOH HOH . 
F 6 HOH A 227 627 274 HOH HOH . 
F 6 HOH A 228 628 153 HOH HOH . 
F 6 HOH A 229 629 154 HOH HOH . 
F 6 HOH A 230 630 229 HOH HOH . 
F 6 HOH A 231 631 306 HOH HOH . 
F 6 HOH A 232 632 96 HOH HOH . 
F 6 HOH A 233 633 83 HOH HOH . 
F 6 HOH A 234 634 84 HOH HOH . 
F 6 HOH A 235 635 298 HOH HOH . 
F 6 HOH A 236 636 128 HOH HOH . 
F 6 HOH A 237 637 170 HOH HOH . 
F 6 HOH A 238 638 158 HOH HOH . 
F 6 HOH A 239 639 236 HOH HOH . 
F 6 HOH A 240 640 203 HOH HOH . 
F 6 HOH A 241 641 194 HOH HOH . 
F 6 HOH A 242 642 180 HOH HOH . 
F 6 HOH A 243 643 307 HOH HOH . 
F 6 HOH A 244 644 297 HOH HOH . 
F 6 HOH A 245 645 192 HOH HOH . 
F 6 HOH A 246 646 272 HOH HOH . 
F 6 HOH A 247 647 245 HOH HOH . 
F 6 HOH A 248 648 177 HOH HOH . 
F 6 HOH A 249 649 324 HOH HOH . 
F 6 HOH A 250 650 308 HOH HOH . 
F 6 HOH A 251 651 167 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               21.557 
_atom_site.Cartn_y               0.81 
_atom_site.Cartn_z               26.164 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#