data_6NBR
#
_model_server_result.job_id            UQIsIK9Ui87nsM672ej6Dw 
_model_server_result.datetime_utc      '2025-01-12 02:44:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nbr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    6NBR 
#
_exptl.entry_id    6NBR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NBR 
_cell.length_a            63.22 
_cell.length_b            63.239 
_cell.length_c            333.746 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NBR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
A,C,E,G,I,K 2 1 
B,D,F,H,J,L 3 1 
B,D,F,H,J,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6NBR 
_atom_sites.fract_transf_matrix[1][1]    0.015818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 401 401 NAP NAP . 
F 2 NAP B 1 401 401 NAP NAP . 
G 2 NAP C 1 401 401 NAP NAP . 
H 2 NAP D 1 401 401 NAP NAP . 
I 3 HOH A 1 501 13 HOH HOH . 
I 3 HOH A 2 502 1 HOH HOH . 
I 3 HOH A 3 503 2 HOH HOH . 
I 3 HOH A 4 504 40 HOH HOH . 
I 3 HOH A 5 505 14 HOH HOH . 
I 3 HOH A 6 506 46 HOH HOH . 
I 3 HOH A 7 507 12 HOH HOH . 
I 3 HOH A 8 508 18 HOH HOH . 
I 3 HOH A 9 509 3 HOH HOH . 
I 3 HOH A 10 510 22 HOH HOH . 
I 3 HOH A 11 511 41 HOH HOH . 
I 3 HOH A 12 512 9 HOH HOH . 
J 3 HOH B 1 501 36 HOH HOH . 
J 3 HOH B 2 502 42 HOH HOH . 
J 3 HOH B 3 503 20 HOH HOH . 
J 3 HOH B 4 504 47 HOH HOH . 
J 3 HOH B 5 505 17 HOH HOH . 
J 3 HOH B 6 506 35 HOH HOH . 
J 3 HOH B 7 507 43 HOH HOH . 
J 3 HOH B 8 508 16 HOH HOH . 
J 3 HOH B 9 509 15 HOH HOH . 
K 3 HOH C 1 501 5 HOH HOH . 
K 3 HOH C 2 502 6 HOH HOH . 
K 3 HOH C 3 503 32 HOH HOH . 
K 3 HOH C 4 504 31 HOH HOH . 
K 3 HOH C 5 505 30 HOH HOH . 
K 3 HOH C 6 506 34 HOH HOH . 
K 3 HOH C 7 507 19 HOH HOH . 
K 3 HOH C 8 508 21 HOH HOH . 
K 3 HOH C 9 509 39 HOH HOH . 
K 3 HOH C 10 510 7 HOH HOH . 
K 3 HOH C 11 511 44 HOH HOH . 
K 3 HOH C 12 512 49 HOH HOH . 
K 3 HOH C 13 513 48 HOH HOH . 
K 3 HOH C 14 514 33 HOH HOH . 
L 3 HOH D 1 501 29 HOH HOH . 
L 3 HOH D 2 502 11 HOH HOH . 
L 3 HOH D 3 503 37 HOH HOH . 
L 3 HOH D 4 504 50 HOH HOH . 
L 3 HOH D 5 505 25 HOH HOH . 
L 3 HOH D 6 506 24 HOH HOH . 
L 3 HOH D 7 507 38 HOH HOH . 
L 3 HOH D 8 508 27 HOH HOH . 
L 3 HOH D 9 509 23 HOH HOH . 
L 3 HOH D 10 510 45 HOH HOH . 
L 3 HOH D 11 511 28 HOH HOH . 
L 3 HOH D 12 512 8 HOH HOH . 
L 3 HOH D 13 513 10 HOH HOH . 
L 3 HOH D 14 514 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -0.004 30.307 69.315 1 98.61 ? PA NAP 401 A 1 
HETATM 2 O O1A NAP . . . E 2 -0.942 31.399 69.773 1 78.92 ? O1A NAP 401 A 1 
HETATM 3 O O2A NAP . . . E 2 -0.254 29.037 70.098 1 70.57 ? O2A NAP 401 A 1 
HETATM 4 O O5B NAP . . . E 2 1.567 30.802 69.542 1 71.09 ? O5B NAP 401 A 1 
HETATM 5 C C5B NAP . . . E 2 1.832 31.775 70.533 1 66.69 ? C5B NAP 401 A 1 
HETATM 6 C C4B NAP . . . E 2 3.237 31.474 71.139 1 70.63 ? C4B NAP 401 A 1 
HETATM 7 O O4B NAP . . . E 2 3.972 32.557 71.148 1 60.04 ? O4B NAP 401 A 1 
HETATM 8 C C3B NAP . . . E 2 3.07 31.035 72.61 1 63.26 ? C3B NAP 401 A 1 
HETATM 9 O O3B NAP . . . E 2 3.913 30.009 72.9 1 58.67 ? O3B NAP 401 A 1 
HETATM 10 C C2B NAP . . . E 2 3.425 32.305 73.41 1 60.27 ? C2B NAP 401 A 1 
HETATM 11 O O2B NAP . . . E 2 3.929 31.963 74.779 1 55.1 ? O2B NAP 401 A 1 
HETATM 12 C C1B NAP . . . E 2 4.356 32.862 72.691 1 56.47 ? C1B NAP 401 A 1 
HETATM 13 N N9A NAP . . . E 2 4.375 34.283 72.909 1 55.48 ? N9A NAP 401 A 1 
HETATM 14 C C8A NAP . . . E 2 3.545 35.304 72.672 1 54.1 ? C8A NAP 401 A 1 
HETATM 15 N N7A NAP . . . E 2 4.135 36.426 73.105 1 52.05 ? N7A NAP 401 A 1 
HETATM 16 C C5A NAP . . . E 2 5.329 36.089 73.61 1 49.49 ? C5A NAP 401 A 1 
HETATM 17 C C6A NAP . . . E 2 6.333 36.835 74.18 1 47.49 ? C6A NAP 401 A 1 
HETATM 18 N N6A NAP . . . E 2 6.345 38.27 74.393 1 50.9 ? N6A NAP 401 A 1 
HETATM 19 N N1A NAP . . . E 2 7.439 36.243 74.602 1 50.09 ? N1A NAP 401 A 1 
HETATM 20 C C2A NAP . . . E 2 7.584 34.899 74.477 1 50.44 ? C2A NAP 401 A 1 
HETATM 21 N N3A NAP . . . E 2 6.599 34.162 73.919 1 48.81 ? N3A NAP 401 A 1 
HETATM 22 C C4A NAP . . . E 2 5.479 34.765 73.488 1 52.23 ? C4A NAP 401 A 1 
HETATM 23 O O3 NAP . . . E 2 -0.238 30.017 67.691 1 77 ? O3 NAP 401 A 1 
HETATM 24 P PN NAP . . . E 2 0.893 29.291 66.7 1 93.74 ? PN NAP 401 A 1 
HETATM 25 O O1N NAP . . . E 2 0.175 28.776 65.479 1 71.31 ? O1N NAP 401 A 1 
HETATM 26 O O2N NAP . . . E 2 1.578 28.14 67.404 1 66.38 ? O2N NAP 401 A 1 
HETATM 27 O O5D NAP . . . E 2 2.042 30.406 66.232 1 60.7 ? O5D NAP 401 A 1 
HETATM 28 C C5D NAP . . . E 2 3.382 29.969 66.062 1 60.9 ? C5D NAP 401 A 1 
HETATM 29 C C4D NAP . . . E 2 4.008 30.627 64.786 1 60.69 ? C4D NAP 401 A 1 
HETATM 30 O O4D NAP . . . E 2 3.461 30.126 63.703 1 67.39 ? O4D NAP 401 A 1 
HETATM 31 C C3D NAP . . . E 2 3.745 32.15 64.74 1 59.92 ? C3D NAP 401 A 1 
HETATM 32 O O3D NAP . . . E 2 4.895 32.835 64.497 1 55.75 ? O3D NAP 401 A 1 
HETATM 33 C C2D NAP . . . E 2 2.764 32.332 63.558 1 62.16 ? C2D NAP 401 A 1 
HETATM 34 O O2D NAP . . . E 2 2.961 33.668 62.916 1 53.24 ? O2D NAP 401 A 1 
HETATM 35 C C1D NAP . . . E 2 3.081 31.368 62.738 1 61.73 ? C1D NAP 401 A 1 
HETATM 36 N N1N NAP . . . E 2 1.97 31.018 61.875 1 60.28 ? N1N NAP 401 A 1 
HETATM 37 C C2N NAP . . . E 2 0.838 30.471 62.396 1 62.24 ? C2N NAP 401 A 1 
HETATM 38 C C3N NAP . . . E 2 -0.226 30.139 61.564 1 58.6 ? C3N NAP 401 A 1 
HETATM 39 C C7N NAP . . . E 2 -1.507 29.52 62.138 1 59.96 ? C7N NAP 401 A 1 
HETATM 40 O O7N NAP . . . E 2 -2.452 29.393 61.441 1 60.79 ? O7N NAP 401 A 1 
HETATM 41 N N7N NAP . . . E 2 -1.567 29.088 63.528 1 65 ? N7N NAP 401 A 1 
HETATM 42 C C4N NAP . . . E 2 -0.129 30.363 60.227 1 59.58 ? C4N NAP 401 A 1 
HETATM 43 C C5N NAP . . . E 2 1.004 30.908 59.708 1 58.13 ? C5N NAP 401 A 1 
HETATM 44 C C6N NAP . . . E 2 2.064 31.238 60.541 1 57.3 ? C6N NAP 401 A 1 
HETATM 45 P P2B NAP . . . E 2 2.798 31.479 75.88 1 61.34 ? P2B NAP 401 A 1 
HETATM 46 O O1X NAP . . . E 2 2.632 29.974 75.813 1 50.73 ? O1X NAP 401 A 1 
HETATM 47 O O2X NAP . . . E 2 3.281 31.902 77.25 1 59.68 ? O2X NAP 401 A 1 
HETATM 48 O O3X NAP . . . E 2 1.461 32.139 75.592 1 53.4 ? O3X NAP 401 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           48 
#