data_6NBS
#
_model_server_result.job_id            WjQJ8cUDrDNIbZ0x77tnFw 
_model_server_result.datetime_utc      '2024-11-14 19:34:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6NBS 
#
_exptl.entry_id    6NBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.23 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-5-benzyl-4,5-dihydro-1H-imidazol-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.37 
_cell.angle_gamma         90 
_cell.entry_id            6NBS 
_cell.length_a            48.895 
_cell.length_b            71.242 
_cell.length_c            60.167 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H13 N3' 
_chem_comp.formula_weight    175.23 
_chem_comp.id                KJ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-5-benzyl-4,5-dihydro-1H-imidazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N03 C04 KJ7 sing 268 n n 
N03 C02 KJ7 doub 269 n n 
C04 C05 KJ7 sing 270 n n 
C06 C05 KJ7 sing 271 n n 
C06 C07 KJ7 sing 272 n n 
C02 N01 KJ7 sing 273 n n 
C02 N13 KJ7 sing 274 n n 
C05 N13 KJ7 sing 275 n n 
C08 C07 KJ7 doub 276 n y 
C08 C09 KJ7 sing 277 n y 
C07 C12 KJ7 sing 278 n y 
C09 C10 KJ7 doub 279 n y 
C12 C11 KJ7 doub 280 n y 
C10 C11 KJ7 sing 281 n y 
C04 H1 KJ7 sing 282 n n 
C04 H2 KJ7 sing 283 n n 
C05 H3 KJ7 sing 284 n n 
C06 H4 KJ7 sing 285 n n 
C06 H5 KJ7 sing 286 n n 
C08 H6 KJ7 sing 287 n n 
C09 H7 KJ7 sing 288 n n 
C10 H8 KJ7 sing 289 n n 
C11 H9 KJ7 sing 290 n n 
C12 H10 KJ7 sing 291 n n 
N01 H11 KJ7 sing 292 n n 
N01 H12 KJ7 sing 293 n n 
N13 H13 KJ7 sing 294 n n 
#
_atom_sites.entry_id                     6NBS 
_atom_sites.fract_transf_matrix[1][1]    0.020452 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007189 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 1 SO4 SO4 . 
C 3 GOL A 1 402 3 GOL GOL . 
D 4 KJ7 A 1 403 1 KJ7 IHB . 
E 5 KJ4 A 1 404 1 KJ4 LIG . 
F 6 HOH A 1 501 204 HOH HOH . 
F 6 HOH A 2 502 24 HOH HOH . 
F 6 HOH A 3 503 183 HOH HOH . 
F 6 HOH A 4 504 93 HOH HOH . 
F 6 HOH A 5 505 55 HOH HOH . 
F 6 HOH A 6 506 42 HOH HOH . 
F 6 HOH A 7 507 121 HOH HOH . 
F 6 HOH A 8 508 79 HOH HOH . 
F 6 HOH A 9 509 131 HOH HOH . 
F 6 HOH A 10 510 34 HOH HOH . 
F 6 HOH A 11 511 142 HOH HOH . 
F 6 HOH A 12 512 176 HOH HOH . 
F 6 HOH A 13 513 78 HOH HOH . 
F 6 HOH A 14 514 153 HOH HOH . 
F 6 HOH A 15 515 197 HOH HOH . 
F 6 HOH A 16 516 166 HOH HOH . 
F 6 HOH A 17 517 38 HOH HOH . 
F 6 HOH A 18 518 75 HOH HOH . 
F 6 HOH A 19 519 81 HOH HOH . 
F 6 HOH A 20 520 212 HOH HOH . 
F 6 HOH A 21 521 114 HOH HOH . 
F 6 HOH A 22 522 31 HOH HOH . 
F 6 HOH A 23 523 18 HOH HOH . 
F 6 HOH A 24 524 232 HOH HOH . 
F 6 HOH A 25 525 161 HOH HOH . 
F 6 HOH A 26 526 73 HOH HOH . 
F 6 HOH A 27 527 164 HOH HOH . 
F 6 HOH A 28 528 61 HOH HOH . 
F 6 HOH A 29 529 120 HOH HOH . 
F 6 HOH A 30 530 50 HOH HOH . 
F 6 HOH A 31 531 130 HOH HOH . 
F 6 HOH A 32 532 115 HOH HOH . 
F 6 HOH A 33 533 160 HOH HOH . 
F 6 HOH A 34 534 14 HOH HOH . 
F 6 HOH A 35 535 51 HOH HOH . 
F 6 HOH A 36 536 223 HOH HOH . 
F 6 HOH A 37 537 59 HOH HOH . 
F 6 HOH A 38 538 117 HOH HOH . 
F 6 HOH A 39 539 228 HOH HOH . 
F 6 HOH A 40 540 174 HOH HOH . 
F 6 HOH A 41 541 66 HOH HOH . 
F 6 HOH A 42 542 111 HOH HOH . 
F 6 HOH A 43 543 26 HOH HOH . 
F 6 HOH A 44 544 62 HOH HOH . 
F 6 HOH A 45 545 132 HOH HOH . 
F 6 HOH A 46 546 139 HOH HOH . 
F 6 HOH A 47 547 19 HOH HOH . 
F 6 HOH A 48 548 15 HOH HOH . 
F 6 HOH A 49 549 100 HOH HOH . 
F 6 HOH A 50 550 178 HOH HOH . 
F 6 HOH A 51 551 83 HOH HOH . 
F 6 HOH A 52 552 217 HOH HOH . 
F 6 HOH A 53 553 112 HOH HOH . 
F 6 HOH A 54 554 52 HOH HOH . 
F 6 HOH A 55 555 41 HOH HOH . 
F 6 HOH A 56 556 143 HOH HOH . 
F 6 HOH A 57 557 9 HOH HOH . 
F 6 HOH A 58 558 203 HOH HOH . 
F 6 HOH A 59 559 44 HOH HOH . 
F 6 HOH A 60 560 216 HOH HOH . 
F 6 HOH A 61 561 35 HOH HOH . 
F 6 HOH A 62 562 91 HOH HOH . 
F 6 HOH A 63 563 128 HOH HOH . 
F 6 HOH A 64 564 189 HOH HOH . 
F 6 HOH A 65 565 84 HOH HOH . 
F 6 HOH A 66 566 20 HOH HOH . 
F 6 HOH A 67 567 11 HOH HOH . 
F 6 HOH A 68 568 144 HOH HOH . 
F 6 HOH A 69 569 37 HOH HOH . 
F 6 HOH A 70 570 17 HOH HOH . 
F 6 HOH A 71 571 53 HOH HOH . 
F 6 HOH A 72 572 60 HOH HOH . 
F 6 HOH A 73 573 4 HOH HOH . 
F 6 HOH A 74 574 69 HOH HOH . 
F 6 HOH A 75 575 3 HOH HOH . 
F 6 HOH A 76 576 58 HOH HOH . 
F 6 HOH A 77 577 16 HOH HOH . 
F 6 HOH A 78 578 202 HOH HOH . 
F 6 HOH A 79 579 148 HOH HOH . 
F 6 HOH A 80 580 165 HOH HOH . 
F 6 HOH A 81 581 89 HOH HOH . 
F 6 HOH A 82 582 85 HOH HOH . 
F 6 HOH A 83 583 1 HOH HOH . 
F 6 HOH A 84 584 122 HOH HOH . 
F 6 HOH A 85 585 10 HOH HOH . 
F 6 HOH A 86 586 6 HOH HOH . 
F 6 HOH A 87 587 45 HOH HOH . 
F 6 HOH A 88 588 68 HOH HOH . 
F 6 HOH A 89 589 5 HOH HOH . 
F 6 HOH A 90 590 8 HOH HOH . 
F 6 HOH A 91 591 7 HOH HOH . 
F 6 HOH A 92 592 101 HOH HOH . 
F 6 HOH A 93 593 169 HOH HOH . 
F 6 HOH A 94 594 43 HOH HOH . 
F 6 HOH A 95 595 30 HOH HOH . 
F 6 HOH A 96 596 118 HOH HOH . 
F 6 HOH A 97 597 13 HOH HOH . 
F 6 HOH A 98 598 33 HOH HOH . 
F 6 HOH A 99 599 72 HOH HOH . 
F 6 HOH A 100 600 106 HOH HOH . 
F 6 HOH A 101 601 80 HOH HOH . 
F 6 HOH A 102 602 196 HOH HOH . 
F 6 HOH A 103 603 40 HOH HOH . 
F 6 HOH A 104 604 156 HOH HOH . 
F 6 HOH A 105 605 12 HOH HOH . 
F 6 HOH A 106 606 27 HOH HOH . 
F 6 HOH A 107 607 64 HOH HOH . 
F 6 HOH A 108 608 48 HOH HOH . 
F 6 HOH A 109 609 25 HOH HOH . 
F 6 HOH A 110 610 46 HOH HOH . 
F 6 HOH A 111 611 71 HOH HOH . 
F 6 HOH A 112 612 2 HOH HOH . 
F 6 HOH A 113 613 36 HOH HOH . 
F 6 HOH A 114 614 23 HOH HOH . 
F 6 HOH A 115 615 209 HOH HOH . 
F 6 HOH A 116 616 109 HOH HOH . 
F 6 HOH A 117 617 67 HOH HOH . 
F 6 HOH A 118 618 159 HOH HOH . 
F 6 HOH A 119 619 163 HOH HOH . 
F 6 HOH A 120 620 54 HOH HOH . 
F 6 HOH A 121 621 76 HOH HOH . 
F 6 HOH A 122 622 56 HOH HOH . 
F 6 HOH A 123 623 105 HOH HOH . 
F 6 HOH A 124 624 63 HOH HOH . 
F 6 HOH A 125 625 28 HOH HOH . 
F 6 HOH A 126 626 82 HOH HOH . 
F 6 HOH A 127 627 29 HOH HOH . 
F 6 HOH A 128 628 102 HOH HOH . 
F 6 HOH A 129 629 32 HOH HOH . 
F 6 HOH A 130 630 146 HOH HOH . 
F 6 HOH A 131 631 57 HOH HOH . 
F 6 HOH A 132 632 150 HOH HOH . 
F 6 HOH A 133 633 158 HOH HOH . 
F 6 HOH A 134 634 141 HOH HOH . 
F 6 HOH A 135 635 107 HOH HOH . 
F 6 HOH A 136 636 240 HOH HOH . 
F 6 HOH A 137 637 135 HOH HOH . 
F 6 HOH A 138 638 145 HOH HOH . 
F 6 HOH A 139 639 220 HOH HOH . 
F 6 HOH A 140 640 47 HOH HOH . 
F 6 HOH A 141 641 171 HOH HOH . 
F 6 HOH A 142 642 152 HOH HOH . 
F 6 HOH A 143 643 98 HOH HOH . 
F 6 HOH A 144 644 238 HOH HOH . 
F 6 HOH A 145 645 87 HOH HOH . 
F 6 HOH A 146 646 88 HOH HOH . 
F 6 HOH A 147 647 200 HOH HOH . 
F 6 HOH A 148 648 74 HOH HOH . 
F 6 HOH A 149 649 180 HOH HOH . 
F 6 HOH A 150 650 123 HOH HOH . 
F 6 HOH A 151 651 211 HOH HOH . 
F 6 HOH A 152 652 226 HOH HOH . 
F 6 HOH A 153 653 198 HOH HOH . 
F 6 HOH A 154 654 179 HOH HOH . 
F 6 HOH A 155 655 39 HOH HOH . 
F 6 HOH A 156 656 133 HOH HOH . 
F 6 HOH A 157 657 206 HOH HOH . 
F 6 HOH A 158 658 230 HOH HOH . 
F 6 HOH A 159 659 236 HOH HOH . 
F 6 HOH A 160 660 97 HOH HOH . 
F 6 HOH A 161 661 103 HOH HOH . 
F 6 HOH A 162 662 92 HOH HOH . 
F 6 HOH A 163 663 138 HOH HOH . 
F 6 HOH A 164 664 49 HOH HOH . 
F 6 HOH A 165 665 215 HOH HOH . 
F 6 HOH A 166 666 77 HOH HOH . 
F 6 HOH A 167 667 22 HOH HOH . 
F 6 HOH A 168 668 222 HOH HOH . 
F 6 HOH A 169 669 99 HOH HOH . 
F 6 HOH A 170 670 168 HOH HOH . 
F 6 HOH A 171 671 241 HOH HOH . 
F 6 HOH A 172 672 21 HOH HOH . 
F 6 HOH A 173 673 210 HOH HOH . 
F 6 HOH A 174 674 95 HOH HOH . 
F 6 HOH A 175 675 234 HOH HOH . 
F 6 HOH A 176 676 119 HOH HOH . 
F 6 HOH A 177 677 213 HOH HOH . 
F 6 HOH A 178 678 125 HOH HOH . 
F 6 HOH A 179 679 172 HOH HOH . 
F 6 HOH A 180 680 140 HOH HOH . 
F 6 HOH A 181 681 175 HOH HOH . 
F 6 HOH A 182 682 218 HOH HOH . 
F 6 HOH A 183 683 151 HOH HOH . 
F 6 HOH A 184 684 136 HOH HOH . 
F 6 HOH A 185 685 207 HOH HOH . 
F 6 HOH A 186 686 127 HOH HOH . 
F 6 HOH A 187 687 155 HOH HOH . 
F 6 HOH A 188 688 191 HOH HOH . 
F 6 HOH A 189 689 137 HOH HOH . 
F 6 HOH A 190 690 65 HOH HOH . 
F 6 HOH A 191 691 134 HOH HOH . 
F 6 HOH A 192 692 110 HOH HOH . 
F 6 HOH A 193 693 96 HOH HOH . 
F 6 HOH A 194 694 208 HOH HOH . 
F 6 HOH A 195 695 126 HOH HOH . 
F 6 HOH A 196 696 154 HOH HOH . 
F 6 HOH A 197 697 167 HOH HOH . 
F 6 HOH A 198 698 227 HOH HOH . 
F 6 HOH A 199 699 147 HOH HOH . 
F 6 HOH A 200 700 199 HOH HOH . 
F 6 HOH A 201 701 233 HOH HOH . 
F 6 HOH A 202 702 173 HOH HOH . 
F 6 HOH A 203 703 149 HOH HOH . 
F 6 HOH A 204 704 186 HOH HOH . 
F 6 HOH A 205 705 214 HOH HOH . 
F 6 HOH A 206 706 124 HOH HOH . 
F 6 HOH A 207 707 90 HOH HOH . 
F 6 HOH A 208 708 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 KJ7 . . . D 4 -22.387 -2.478 56.67 1 53.1 ? C02 KJ7 403 A 1 
HETATM 2 C C04 KJ7 . . . D 4 -23.924 -1.138 55.482 1 59.75 ? C04 KJ7 403 A 1 
HETATM 3 C C05 KJ7 . . . D 4 -23.606 -0.446 56.755 1 56.03 ? C05 KJ7 403 A 1 
HETATM 4 C C06 KJ7 . . . D 4 -22.996 0.932 56.428 1 44.59 ? C06 KJ7 403 A 1 
HETATM 5 C C07 KJ7 . . . D 4 -22.722 1.883 57.666 1 38.14 ? C07 KJ7 403 A 1 
HETATM 6 C C08 KJ7 . . . D 4 -22.73 3.272 57.448 1 37.82 ? C08 KJ7 403 A 1 
HETATM 7 C C09 KJ7 . . . D 4 -22.482 4.17 58.499 1 30.18 ? C09 KJ7 403 A 1 
HETATM 8 C C10 KJ7 . . . D 4 -22.22 3.672 59.8 1 28.5 ? C10 KJ7 403 A 1 
HETATM 9 C C11 KJ7 . . . D 4 -22.211 2.282 60.026 1 38.29 ? C11 KJ7 403 A 1 
HETATM 10 C C12 KJ7 . . . D 4 -22.457 1.383 58.956 1 37.03 ? C12 KJ7 403 A 1 
HETATM 11 N N01 KJ7 . . . D 4 -21.618 -3.41 56.996 1 61.02 ? N01 KJ7 403 A 1 
HETATM 12 N N03 KJ7 . . . D 4 -23.16 -2.392 55.436 1 50.92 ? N03 KJ7 403 A 1 
HETATM 13 N N13 KJ7 . . . D 4 -22.66 -1.276 57.473 1 53.93 ? N13 KJ7 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#