data_6NBW
#
_model_server_result.job_id            Ae8HLPoie1SxoFRGGE8xAw 
_model_server_result.datetime_utc      '2024-11-16 06:25:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nbw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":404}' 
#
_entry.id    6NBW 
#
_exptl.entry_id    6NBW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NBW 
_cell.length_a            104.406 
_cell.length_b            115.594 
_cell.length_c            132.195 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NBW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 71 A GLU 72 1_555 A N HIC 72 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C HIC 72 A HIC 73 1_555 A N GLY 73 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 D CA CA . A CA 401 1_555 E O3G ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 D CA CA . A CA 401 1_555 E O1B ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 D CA CA . A CA 401 1_555 K O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc4 D CA CA . A CA 401 1_555 K O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc5 D CA CA . A CA 401 1_555 K O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc6 D CA CA . A CA 401 1_555 K O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc7 D CA CA . A CA 401 1_555 K O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     6NBW 
_atom_sites.fract_transf_matrix[1][1]    0.009578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 401 401 CA CA . 
E 5 ATP A 1 402 402 ATP ATP . 
F 6 LAB A 1 403 402 LAB LAB . 
G 7 GOL A 1 404 404 GOL GOL . 
H 7 GOL A 1 405 405 GOL GOL . 
I 8 SOP N 1 400 400 SOP SOP . 
J 9 MES N 1 401 401 MES MES . 
K 10 HOH A 1 501 554 HOH HOH . 
K 10 HOH A 2 502 505 HOH HOH . 
K 10 HOH A 3 503 516 HOH HOH . 
K 10 HOH A 4 504 503 HOH HOH . 
K 10 HOH A 5 505 533 HOH HOH . 
K 10 HOH A 6 506 514 HOH HOH . 
K 10 HOH A 7 507 517 HOH HOH . 
K 10 HOH A 8 508 509 HOH HOH . 
K 10 HOH A 9 509 548 HOH HOH . 
K 10 HOH A 10 510 507 HOH HOH . 
K 10 HOH A 11 511 520 HOH HOH . 
K 10 HOH A 12 512 511 HOH HOH . 
K 10 HOH A 13 513 501 HOH HOH . 
K 10 HOH A 14 514 557 HOH HOH . 
K 10 HOH A 15 515 530 HOH HOH . 
K 10 HOH A 16 516 539 HOH HOH . 
K 10 HOH A 17 517 508 HOH HOH . 
K 10 HOH A 18 518 535 HOH HOH . 
K 10 HOH A 19 519 518 HOH HOH . 
K 10 HOH A 20 520 527 HOH HOH . 
K 10 HOH A 21 521 550 HOH HOH . 
K 10 HOH A 22 522 515 HOH HOH . 
K 10 HOH A 23 523 537 HOH HOH . 
K 10 HOH A 24 524 526 HOH HOH . 
K 10 HOH A 25 525 513 HOH HOH . 
K 10 HOH A 26 526 552 HOH HOH . 
K 10 HOH A 27 527 543 HOH HOH . 
K 10 HOH A 28 528 510 HOH HOH . 
K 10 HOH A 29 529 525 HOH HOH . 
K 10 HOH A 30 530 523 HOH HOH . 
K 10 HOH A 31 531 512 HOH HOH . 
K 10 HOH A 32 532 553 HOH HOH . 
K 10 HOH A 33 533 502 HOH HOH . 
K 10 HOH A 34 534 534 HOH HOH . 
K 10 HOH A 35 535 524 HOH HOH . 
K 10 HOH A 36 536 540 HOH HOH . 
K 10 HOH A 37 537 541 HOH HOH . 
K 10 HOH A 38 538 529 HOH HOH . 
K 10 HOH A 39 539 521 HOH HOH . 
K 10 HOH A 40 540 573 HOH HOH . 
K 10 HOH A 41 541 531 HOH HOH . 
K 10 HOH A 42 542 536 HOH HOH . 
K 10 HOH A 43 543 542 HOH HOH . 
K 10 HOH A 44 544 601 HOH HOH . 
K 10 HOH A 45 545 545 HOH HOH . 
K 10 HOH A 46 546 571 HOH HOH . 
K 10 HOH A 47 547 559 HOH HOH . 
K 10 HOH A 48 548 549 HOH HOH . 
K 10 HOH A 49 549 560 HOH HOH . 
K 10 HOH A 50 550 575 HOH HOH . 
K 10 HOH A 51 551 538 HOH HOH . 
K 10 HOH A 52 552 544 HOH HOH . 
K 10 HOH A 53 553 576 HOH HOH . 
K 10 HOH A 54 554 551 HOH HOH . 
K 10 HOH A 55 555 587 HOH HOH . 
K 10 HOH A 56 556 585 HOH HOH . 
K 10 HOH A 57 557 547 HOH HOH . 
K 10 HOH A 58 558 565 HOH HOH . 
K 10 HOH A 59 559 555 HOH HOH . 
K 10 HOH A 60 560 594 HOH HOH . 
K 10 HOH A 61 561 562 HOH HOH . 
K 10 HOH A 62 562 558 HOH HOH . 
K 10 HOH A 63 563 522 HOH HOH . 
K 10 HOH A 64 564 593 HOH HOH . 
K 10 HOH A 65 565 574 HOH HOH . 
K 10 HOH A 66 566 586 HOH HOH . 
K 10 HOH A 67 567 599 HOH HOH . 
K 10 HOH A 68 568 569 HOH HOH . 
K 10 HOH A 69 569 588 HOH HOH . 
K 10 HOH A 70 570 579 HOH HOH . 
K 10 HOH A 71 571 570 HOH HOH . 
K 10 HOH A 72 572 580 HOH HOH . 
K 10 HOH A 73 573 581 HOH HOH . 
K 10 HOH A 74 574 556 HOH HOH . 
K 10 HOH A 75 575 566 HOH HOH . 
K 10 HOH A 76 576 583 HOH HOH . 
K 10 HOH A 77 577 595 HOH HOH . 
K 10 HOH A 78 578 596 HOH HOH . 
K 10 HOH A 79 579 605 HOH HOH . 
K 10 HOH A 80 580 567 HOH HOH . 
K 10 HOH A 81 581 607 HOH HOH . 
K 10 HOH A 82 582 564 HOH HOH . 
K 10 HOH A 83 583 519 HOH HOH . 
K 10 HOH A 84 584 592 HOH HOH . 
K 10 HOH A 85 585 582 HOH HOH . 
K 10 HOH A 86 586 591 HOH HOH . 
K 10 HOH A 87 587 589 HOH HOH . 
K 10 HOH A 88 588 578 HOH HOH . 
K 10 HOH A 89 589 563 HOH HOH . 
K 10 HOH A 90 590 572 HOH HOH . 
K 10 HOH A 91 591 558 HOH HOH . 
K 10 HOH A 92 592 603 HOH HOH . 
K 10 HOH A 93 593 568 HOH HOH . 
K 10 HOH A 94 594 598 HOH HOH . 
K 10 HOH A 95 595 584 HOH HOH . 
K 10 HOH A 96 596 590 HOH HOH . 
K 10 HOH A 97 597 606 HOH HOH . 
K 10 HOH A 98 598 597 HOH HOH . 
K 10 HOH A 99 599 600 HOH HOH . 
K 10 HOH A 100 600 546 HOH HOH . 
K 10 HOH A 101 601 604 HOH HOH . 
K 10 HOH A 102 602 506 HOH HOH . 
K 10 HOH A 103 603 608 HOH HOH . 
K 10 HOH A 104 604 561 HOH HOH . 
K 10 HOH A 105 605 613 HOH HOH . 
K 10 HOH A 106 606 602 HOH HOH . 
K 10 HOH A 107 607 610 HOH HOH . 
K 10 HOH A 108 608 624 HOH HOH . 
K 10 HOH A 109 609 614 HOH HOH . 
K 10 HOH A 110 610 616 HOH HOH . 
K 10 HOH A 111 611 617 HOH HOH . 
K 10 HOH A 112 612 620 HOH HOH . 
K 10 HOH A 113 613 618 HOH HOH . 
K 10 HOH A 114 614 622 HOH HOH . 
K 10 HOH A 115 615 612 HOH HOH . 
K 10 HOH A 116 616 623 HOH HOH . 
L 10 HOH N 1 501 503 HOH HOH . 
L 10 HOH N 2 502 506 HOH HOH . 
L 10 HOH N 3 503 507 HOH HOH . 
L 10 HOH N 4 504 523 HOH HOH . 
L 10 HOH N 5 505 505 HOH HOH . 
L 10 HOH N 6 506 538 HOH HOH . 
L 10 HOH N 7 507 512 HOH HOH . 
L 10 HOH N 8 508 510 HOH HOH . 
L 10 HOH N 9 509 511 HOH HOH . 
L 10 HOH N 10 510 508 HOH HOH . 
L 10 HOH N 11 511 532 HOH HOH . 
L 10 HOH N 12 512 520 HOH HOH . 
L 10 HOH N 13 513 560 HOH HOH . 
L 10 HOH N 14 514 513 HOH HOH . 
L 10 HOH N 15 515 514 HOH HOH . 
L 10 HOH N 16 516 515 HOH HOH . 
L 10 HOH N 17 517 516 HOH HOH . 
L 10 HOH N 18 518 517 HOH HOH . 
L 10 HOH N 19 519 524 HOH HOH . 
L 10 HOH N 20 520 509 HOH HOH . 
L 10 HOH N 21 521 525 HOH HOH . 
L 10 HOH N 22 522 528 HOH HOH . 
L 10 HOH N 23 523 528 HOH HOH . 
L 10 HOH N 24 524 540 HOH HOH . 
L 10 HOH N 25 525 522 HOH HOH . 
L 10 HOH N 26 526 531 HOH HOH . 
L 10 HOH N 27 527 518 HOH HOH . 
L 10 HOH N 28 528 533 HOH HOH . 
L 10 HOH N 29 529 529 HOH HOH . 
L 10 HOH N 30 530 519 HOH HOH . 
L 10 HOH N 31 531 521 HOH HOH . 
L 10 HOH N 32 532 541 HOH HOH . 
L 10 HOH N 33 533 526 HOH HOH . 
L 10 HOH N 34 534 548 HOH HOH . 
L 10 HOH N 35 535 536 HOH HOH . 
L 10 HOH N 36 536 542 HOH HOH . 
L 10 HOH N 37 537 504 HOH HOH . 
L 10 HOH N 38 538 543 HOH HOH . 
L 10 HOH N 39 539 537 HOH HOH . 
L 10 HOH N 40 540 545 HOH HOH . 
L 10 HOH N 41 541 549 HOH HOH . 
L 10 HOH N 42 542 534 HOH HOH . 
L 10 HOH N 43 543 551 HOH HOH . 
L 10 HOH N 44 544 546 HOH HOH . 
L 10 HOH N 45 545 532 HOH HOH . 
L 10 HOH N 46 546 550 HOH HOH . 
L 10 HOH N 47 547 544 HOH HOH . 
L 10 HOH N 48 548 530 HOH HOH . 
L 10 HOH N 49 549 535 HOH HOH . 
L 10 HOH N 50 550 547 HOH HOH . 
L 10 HOH N 51 551 552 HOH HOH . 
L 10 HOH N 52 552 553 HOH HOH . 
L 10 HOH N 53 553 539 HOH HOH . 
L 10 HOH N 54 554 559 HOH HOH . 
L 10 HOH N 55 555 554 HOH HOH . 
L 10 HOH N 56 556 555 HOH HOH . 
L 10 HOH N 57 557 557 HOH HOH . 
M 10 HOH P 1 201 230 HOH HOH . 
M 10 HOH P 2 202 205 HOH HOH . 
M 10 HOH P 3 203 212 HOH HOH . 
M 10 HOH P 4 204 218 HOH HOH . 
M 10 HOH P 5 205 206 HOH HOH . 
M 10 HOH P 6 206 203 HOH HOH . 
M 10 HOH P 7 207 216 HOH HOH . 
M 10 HOH P 8 208 213 HOH HOH . 
M 10 HOH P 9 209 204 HOH HOH . 
M 10 HOH P 10 210 209 HOH HOH . 
M 10 HOH P 11 211 208 HOH HOH . 
M 10 HOH P 12 212 215 HOH HOH . 
M 10 HOH P 13 213 217 HOH HOH . 
M 10 HOH P 14 214 207 HOH HOH . 
M 10 HOH P 15 215 214 HOH HOH . 
M 10 HOH P 16 216 210 HOH HOH . 
M 10 HOH P 17 217 224 HOH HOH . 
M 10 HOH P 18 218 211 HOH HOH . 
M 10 HOH P 19 219 220 HOH HOH . 
M 10 HOH P 20 220 221 HOH HOH . 
M 10 HOH P 21 221 219 HOH HOH . 
M 10 HOH P 22 222 228 HOH HOH . 
M 10 HOH P 23 223 229 HOH HOH . 
M 10 HOH P 24 224 223 HOH HOH . 
M 10 HOH P 25 225 527 HOH HOH . 
M 10 HOH P 26 226 226 HOH HOH . 
M 10 HOH P 27 227 225 HOH HOH . 
M 10 HOH P 28 228 222 HOH HOH . 
M 10 HOH P 29 229 227 HOH HOH . 
M 10 HOH P 30 230 231 HOH HOH . 
M 10 HOH P 31 231 621 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 7 -23.047 -20.943 13.503 1 37.92 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . G 7 -24.138 -21.533 14.161 1 35.09 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . G 7 -23.254 -21.046 11.952 1 34.03 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . G 7 -24.497 -20.581 11.557 1 35.26 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . G 7 -22.09 -20.202 11.348 1 35.81 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . G 7 -21.681 -20.838 10.16 1 34.56 ? O3 GOL 404 A 1 
HETATM 7 H H11 GOL . . . G 7 -22.208 -21.372 13.732 1 45.51 ? H11 GOL 404 A 1 
HETATM 8 H H12 GOL . . . G 7 -22.941 -20.008 13.74 1 45.51 ? H12 GOL 404 A 1 
HETATM 9 H HO1 GOL . . . G 7 -24.241 -22.298 13.808 1 42.12 ? HO1 GOL 404 A 1 
HETATM 10 H H2 GOL . . . G 7 -23.214 -21.97 11.659 1 40.84 ? H2 GOL 404 A 1 
HETATM 11 H HO2 GOL . . . G 7 -24.554 -20.675 10.721 1 42.32 ? HO2 GOL 404 A 1 
HETATM 12 H H31 GOL . . . G 7 -21.382 -20.132 12.007 1 42.97 ? H31 GOL 404 A 1 
HETATM 13 H H32 GOL . . . G 7 -22.402 -19.295 11.209 1 42.97 ? H32 GOL 404 A 1 
HETATM 14 H HO3 GOL . . . G 7 -21.145 -20.307 9.77 1 41.48 ? HO3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#