data_6NC6 # _model_server_result.job_id b-j9Y476zxTz89uddT7ZfA _model_server_result.datetime_utc '2024-11-21 14:39:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 6NC6 # _exptl.entry_id 6NC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NC6 _cell.length_a 71.134 _cell.length_b 101.759 _cell.length_c 158.516 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 210 A HIS 210 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 A ND1 HIS 213 A HIS 213 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc3 A OD1 ASP 235 A ASP 235 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A OD1 ASN 374 A ASN 374 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 A OD1 ASP 378 A ASP 378 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 A O VAL 390 A VAL 390 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 A OG1 THR 394 A THR 394 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 B ND1 HIS 210 B HIS 210 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc9 B ND1 HIS 213 B HIS 213 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 222 n n C1 O20 OLB sing 223 n n C2 C1 OLB sing 224 n n C3 C2 OLB sing 225 n n C4 C3 OLB sing 226 n n C5 C4 OLB sing 227 n n C5 C6 OLB sing 228 n n O20 C21 OLB sing 229 n n C21 C22 OLB sing 230 n n C22 C24 OLB sing 231 n n O23 C22 OLB sing 232 n n C24 O25 OLB sing 233 n n C6 C7 OLB sing 234 n n C7 C8 OLB sing 235 n n C8 C9 OLB sing 236 n n C9 C10 OLB doub 237 z n C10 C11 OLB sing 238 n n C2 H2 OLB sing 239 n n C2 H2A OLB sing 240 n n C3 H3 OLB sing 241 n n C3 H3A OLB sing 242 n n C4 H4 OLB sing 243 n n C4 H4A OLB sing 244 n n C5 H5 OLB sing 245 n n C5 H5A OLB sing 246 n n C21 H21 OLB sing 247 n n C21 H21A OLB sing 248 n n C22 H22 OLB sing 249 n n O23 HO23 OLB sing 250 n n C24 H24 OLB sing 251 n n C24 H24A OLB sing 252 n n O25 HO25 OLB sing 253 n n C6 H16 OLB sing 254 n n C6 H17 OLB sing 255 n n C7 H18 OLB sing 256 n n C7 H19 OLB sing 257 n n C8 H20 OLB sing 258 n n C8 H211 OLB sing 259 n n C9 H221 OLB sing 260 n n C10 H23 OLB sing 261 n n C11 H241 OLB sing 262 n n C11 H25 OLB sing 263 n n C11 C12 OLB sing 264 n n C12 H26 OLB sing 265 n n C12 C13 OLB sing 266 n n C12 H27 OLB sing 267 n n C13 C14 OLB sing 268 n n C13 H28 OLB sing 269 n n C13 H29 OLB sing 270 n n C14 H30 OLB sing 271 n n C14 H31 OLB sing 272 n n C14 C15 OLB sing 273 n n C15 C16 OLB sing 274 n n C15 H32 OLB sing 275 n n C15 H33 OLB sing 276 n n C16 H34 OLB sing 277 n n C16 H35 OLB sing 278 n n C16 C17 OLB sing 279 n n C17 C18 OLB sing 280 n n C17 H36 OLB sing 281 n n C17 H37 OLB sing 282 n n C18 H38 OLB sing 283 n n C18 H39 OLB sing 284 n n C18 H40 OLB sing 285 n n # _atom_sites.entry_id 6NC6 _atom_sites.fract_transf_matrix[1][1] 0.014058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 502 502 CL CL . E 3 CL A 1 503 503 CL CL . F 3 CL A 1 504 504 CL CL . G 4 ZN A 1 505 505 ZN ZN . H 5 OLB A 1 506 506 OLB OLB . I 3 CL B 1 501 502 CL CL . J 3 CL B 1 502 503 CL CL . K 3 CL B 1 503 504 CL CL . L 4 ZN B 1 504 505 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . H 5 -4.042 -8.444 24.393 1 29.46 ? C1 OLB 506 A 1 HETATM 2 C C2 OLB . . . H 5 -4.036 -9.228 25.703 1 28.37 ? C2 OLB 506 A 1 HETATM 3 C C3 OLB . . . H 5 -5.264 -10.136 25.753 1 27.34 ? C3 OLB 506 A 1 HETATM 4 C C4 OLB . . . H 5 -5.044 -11.253 26.771 1 30.6 ? C4 OLB 506 A 1 HETATM 5 C C5 OLB . . . H 5 -5.878 -12.472 26.383 1 24.31 ? C5 OLB 506 A 1 HETATM 6 O O19 OLB . . . H 5 -5.026 -8.408 23.732 1 29.24 ? O19 OLB 506 A 1 HETATM 7 O O20 OLB . . . H 5 -2.881 -7.779 23.981 1 31.64 ? O20 OLB 506 A 1 HETATM 8 C C21 OLB . . . H 5 -2.983 -7.092 22.766 1 32.17 ? C21 OLB 506 A 1 HETATM 9 C C22 OLB . . . H 5 -1.575 -6.897 22.2 1 33.36 ? C22 OLB 506 A 1 HETATM 10 O O23 OLB . . . H 5 -0.704 -7.785 22.842 1 39.95 ? O23 OLB 506 A 1 HETATM 11 C C24 OLB . . . H 5 -1.537 -7.164 20.694 1 32.02 ? C24 OLB 506 A 1 HETATM 12 O O25 OLB . . . H 5 -1.409 -5.952 20.003 1 33.23 ? O25 OLB 506 A 1 HETATM 13 C C6 OLB . . . H 5 -6.434 -13.127 27.646 1 23.07 ? C6 OLB 506 A 1 HETATM 14 C C7 OLB . . . H 5 -6.678 -14.617 27.394 1 23.92 ? C7 OLB 506 A 1 HETATM 15 C C8 OLB . . . H 5 -6.766 -15.387 28.709 1 24.21 ? C8 OLB 506 A 1 HETATM 16 C C9 OLB . . . H 5 -5.394 -15.408 29.389 1 26.41 ? C9 OLB 506 A 1 HETATM 17 C C10 OLB . . . H 5 -5.11 -16.277 30.342 1 24.96 ? C10 OLB 506 A 1 HETATM 18 C C11 OLB . . . H 5 -6.14 -17.306 30.806 1 24.8 ? C11 OLB 506 A 1 HETATM 19 H H2 OLB . . . H 5 -3.232 -9.768 25.754 1 34.42 ? H2 OLB 506 A 1 HETATM 20 H H2A OLB . . . H 5 -4.059 -8.61 26.451 1 34.42 ? H2A OLB 506 A 1 HETATM 21 H H3 OLB . . . H 5 -5.413 -10.524 24.877 1 33.19 ? H3 OLB 506 A 1 HETATM 22 H H3A OLB . . . H 5 -6.04 -9.614 26.011 1 33.19 ? H3A OLB 506 A 1 HETATM 23 H H4 OLB . . . H 5 -5.312 -10.945 27.651 1 37.1 ? H4 OLB 506 A 1 HETATM 24 H H4A OLB . . . H 5 -4.105 -11.496 26.786 1 37.1 ? H4A OLB 506 A 1 HETATM 25 H H5 OLB . . . H 5 -5.321 -13.107 25.907 1 29.56 ? H5 OLB 506 A 1 HETATM 26 H H5A OLB . . . H 5 -6.612 -12.194 25.812 1 29.56 ? H5A OLB 506 A 1 HETATM 27 H H21 OLB . . . H 5 -3.4 -6.228 22.912 1 38.99 ? H21 OLB 506 A 1 HETATM 28 H H21A OLB . . . H 5 -3.518 -7.608 22.142 1 38.99 ? H21A OLB 506 A 1 HETATM 29 H H22 OLB . . . H 5 -1.307 -5.977 22.353 1 40.42 ? H22 OLB 506 A 1 HETATM 30 H HO23 OLB . . . H 5 -1.024 -7.997 23.6 1 48.33 ? HO23 OLB 506 A 1 HETATM 31 H H24 OLB . . . H 5 -0.781 -7.735 20.487 1 38.81 ? H24 OLB 506 A 1 HETATM 32 H H24A OLB . . . H 5 -2.358 -7.604 20.424 1 38.81 ? H24A OLB 506 A 1 HETATM 33 H HO25 OLB . . . H 5 -1.385 -6.104 19.167 1 40.26 ? HO25 OLB 506 A 1 HETATM 34 H H16 OLB . . . H 5 -5.797 -13.023 28.37 1 28.07 ? H16 OLB 506 A 1 HETATM 35 H H17 OLB . . . H 5 -7.271 -12.7 27.888 1 28.07 ? H17 OLB 506 A 1 HETATM 36 H H18 OLB . . . H 5 -5.946 -14.973 26.866 1 29.09 ? H18 OLB 506 A 1 HETATM 37 H H19 OLB . . . H 5 -7.51 -14.724 26.907 1 29.09 ? H19 OLB 506 A 1 HETATM 38 H H20 OLB . . . H 5 -7.409 -14.955 29.293 1 29.43 ? H20 OLB 506 A 1 HETATM 39 H H211 OLB . . . H 5 -7.051 -16.297 28.531 1 29.43 ? H211 OLB 506 A 1 HETATM 40 H H221 OLB . . . H 5 -4.746 -14.795 29.125 1 32.07 ? H221 OLB 506 A 1 HETATM 41 H H23 OLB . . . H 5 -4.268 -16.262 30.738 1 30.34 ? H23 OLB 506 A 1 HETATM 42 H H25 OLB . . . H 5 -6.864 -16.854 31.267 1 30.14 ? H25 OLB 506 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #