data_6NC7 # _model_server_result.job_id pSYKX0OsPmW9dBpVXy3nAw _model_server_result.datetime_utc '2024-11-04 22:35:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 6NC7 # _exptl.entry_id 6NC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.29 _cell.angle_gamma 90 _cell.entry_id 6NC7 _cell.length_a 129.692 _cell.length_b 105.514 _cell.length_c 111.479 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 222 n n C10 C9 OLC doub 223 n n C10 C11 OLC sing 224 n n C9 C8 OLC sing 225 n n C17 C16 OLC sing 226 z n C11 C12 OLC sing 227 n n C8 C7 OLC sing 228 n n C24 C22 OLC sing 229 n n C24 O25 OLC sing 230 n n C16 C15 OLC sing 231 n n C12 C13 OLC sing 232 n n C7 C6 OLC sing 233 n n C15 C14 OLC sing 234 n n C13 C14 OLC sing 235 n n C6 C5 OLC sing 236 n n C5 C4 OLC sing 237 n n C4 C3 OLC sing 238 n n C3 C2 OLC sing 239 n n C2 C1 OLC sing 240 n n C21 C22 OLC sing 241 n n C21 O20 OLC sing 242 n n C1 O19 OLC doub 243 n n C1 O20 OLC sing 244 n n C22 O23 OLC sing 245 n n C18 H18 OLC sing 246 n n C18 H18A OLC sing 247 n n C18 H18B OLC sing 248 n n C10 H10 OLC sing 249 n n C9 H9 OLC sing 250 n n C17 H17 OLC sing 251 n n C17 H17A OLC sing 252 n n C11 H11 OLC sing 253 n n C11 H11A OLC sing 254 n n C8 H8 OLC sing 255 n n C8 H8A OLC sing 256 n n C24 H24 OLC sing 257 n n C24 H24A OLC sing 258 n n C16 H16 OLC sing 259 n n C16 H16A OLC sing 260 n n C12 H12 OLC sing 261 n n C12 H12A OLC sing 262 n n C7 H7 OLC sing 263 n n C7 H7A OLC sing 264 n n C15 H15 OLC sing 265 n n C15 H15A OLC sing 266 n n C13 H13 OLC sing 267 n n C13 H13A OLC sing 268 n n C6 H6 OLC sing 269 n n C6 H6A OLC sing 270 n n C14 H14 OLC sing 271 n n C14 H14A OLC sing 272 n n C5 H5 OLC sing 273 n n C5 H5A OLC sing 274 n n C4 H4 OLC sing 275 n n C4 H4A OLC sing 276 n n C3 H3 OLC sing 277 n n C3 H3A OLC sing 278 n n C2 H2 OLC sing 279 n n C2 H2A OLC sing 280 n n C21 H21 OLC sing 281 n n C21 H21A OLC sing 282 n n C22 H22 OLC sing 283 n n O25 HO25 OLC sing 284 n n O23 HO23 OLC sing 285 n n # _atom_sites.entry_id 6NC7 _atom_sites.fract_transf_matrix[1][1] 0.007711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005458 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 501 1 OLC OLC . D 2 OLC A 1 502 5 OLC OLC . E 2 OLC A 1 503 6 OLC OLC . F 3 SO4 A 1 504 1 SO4 SO4 . G 2 OLC B 1 501 2 OLC OLC . H 2 OLC B 1 502 3 OLC OLC . I 2 OLC B 1 503 4 OLC OLC . J 2 OLC B 1 504 7 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . H 2 309.815 -109.775 1831.953 1 45.14 ? C9 OLC 502 B 1 HETATM 2 C C8 OLC . . . H 2 309.913 -109.012 1830.632 1 42.65 ? C8 OLC 502 B 1 HETATM 3 C C24 OLC . . . H 2 306.416 -97.125 1826.164 1 59.75 ? C24 OLC 502 B 1 HETATM 4 C C7 OLC . . . H 2 309.095 -107.725 1830.719 1 42.29 ? C7 OLC 502 B 1 HETATM 5 C C6 OLC . . . H 2 309.225 -106.935 1829.419 1 42.87 ? C6 OLC 502 B 1 HETATM 6 C C5 OLC . . . H 2 308.229 -105.772 1829.411 1 42.65 ? C5 OLC 502 B 1 HETATM 7 C C4 OLC . . . H 2 308.179 -105.16 1828.015 1 45.79 ? C4 OLC 502 B 1 HETATM 8 C C3 OLC . . . H 2 307.834 -103.678 1828.095 1 47.24 ? C3 OLC 502 B 1 HETATM 9 C C2 OLC . . . H 2 307.952 -103.065 1826.697 1 52.11 ? C2 OLC 502 B 1 HETATM 10 C C21 OLC . . . H 2 307.187 -99.34 1827.017 1 56.38 ? C21 OLC 502 B 1 HETATM 11 C C1 OLC . . . H 2 308.097 -101.543 1826.794 1 52.66 ? C1 OLC 502 B 1 HETATM 12 C C22 OLC . . . H 2 306.235 -98.637 1826.054 1 58.31 ? C22 OLC 502 B 1 HETATM 13 O O19 OLC . . . H 2 309.179 -101.068 1826.75 1 53.21 ? O19 OLC 502 B 1 HETATM 14 O O25 OLC . . . H 2 305.155 -96.517 1826.22 1 58.7 ? O25 OLC 502 B 1 HETATM 15 O O23 OLC . . . H 2 306.527 -99.066 1824.752 1 51.56 ? O23 OLC 502 B 1 HETATM 16 O O20 OLC . . . H 2 306.963 -100.725 1826.929 1 55.5 ? O20 OLC 502 B 1 HETATM 17 H H8 OLC . . . H 2 310.841 -108.794 1830.454 1 52.08 ? H8 OLC 502 B 1 HETATM 18 H H8A OLC . . . H 2 309.568 -109.566 1829.914 1 52.08 ? H8A OLC 502 B 1 HETATM 19 H H24 OLC . . . H 2 306.899 -96.799 1825.389 1 72.6 ? H24 OLC 502 B 1 HETATM 20 H H24A OLC . . . H 2 306.914 -96.915 1826.969 1 72.6 ? H24A OLC 502 B 1 HETATM 21 H H7 OLC . . . H 2 309.421 -107.186 1831.456 1 51.65 ? H7 OLC 502 B 1 HETATM 22 H H7A OLC . . . H 2 308.163 -107.946 1830.869 1 51.65 ? H7A OLC 502 B 1 HETATM 23 H H6 OLC . . . H 2 310.127 -106.587 1829.343 1 52.35 ? H6 OLC 502 B 1 HETATM 24 H H6A OLC . . . H 2 309.041 -107.52 1828.667 1 52.35 ? H6A OLC 502 B 1 HETATM 25 H H5 OLC . . . H 2 307.348 -106.098 1829.654 1 52.09 ? H5 OLC 502 B 1 HETATM 26 H H5A OLC . . . H 2 308.512 -105.099 1830.049 1 52.09 ? H5A OLC 502 B 1 HETATM 27 H H4 OLC . . . H 2 309.044 -105.265 1827.588 1 55.85 ? H4 OLC 502 B 1 HETATM 28 H H4A OLC . . . H 2 307.505 -105.618 1827.488 1 55.85 ? H4A OLC 502 B 1 HETATM 29 H H3 OLC . . . H 2 306.927 -103.572 1828.422 1 57.59 ? H3 OLC 502 B 1 HETATM 30 H H3A OLC . . . H 2 308.451 -103.233 1828.698 1 57.59 ? H3A OLC 502 B 1 HETATM 31 H H2 OLC . . . H 2 307.156 -103.279 1826.185 1 63.43 ? H2 OLC 502 B 1 HETATM 32 H H2A OLC . . . H 2 308.729 -103.434 1826.249 1 63.43 ? H2A OLC 502 B 1 HETATM 33 H H21 OLC . . . H 2 307.017 -99.039 1827.923 1 68.56 ? H21 OLC 502 B 1 HETATM 34 H H21A OLC . . . H 2 308.104 -99.141 1826.773 1 68.56 ? H21A OLC 502 B 1 HETATM 35 H H22 OLC . . . H 2 305.319 -98.871 1826.275 1 70.88 ? H22 OLC 502 B 1 HETATM 36 H HO25 OLC . . . H 2 305.249 -95.676 1826.295 1 71.34 ? HO25 OLC 502 B 1 HETATM 37 H HO23 OLC . . . H 2 306.73 -99.892 1824.764 1 62.77 ? HO23 OLC 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #