data_6NC7 # _model_server_result.job_id Zfa2JiWNQj1NFgEjHkkW-A _model_server_result.datetime_utc '2024-11-04 22:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 6NC7 # _exptl.entry_id 6NC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.29 _cell.angle_gamma 90 _cell.entry_id 6NC7 _cell.length_a 129.692 _cell.length_b 105.514 _cell.length_c 111.479 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 222 n n C10 C9 OLC doub 223 n n C10 C11 OLC sing 224 n n C9 C8 OLC sing 225 n n C17 C16 OLC sing 226 z n C11 C12 OLC sing 227 n n C8 C7 OLC sing 228 n n C24 C22 OLC sing 229 n n C24 O25 OLC sing 230 n n C16 C15 OLC sing 231 n n C12 C13 OLC sing 232 n n C7 C6 OLC sing 233 n n C15 C14 OLC sing 234 n n C13 C14 OLC sing 235 n n C6 C5 OLC sing 236 n n C5 C4 OLC sing 237 n n C4 C3 OLC sing 238 n n C3 C2 OLC sing 239 n n C2 C1 OLC sing 240 n n C21 C22 OLC sing 241 n n C21 O20 OLC sing 242 n n C1 O19 OLC doub 243 n n C1 O20 OLC sing 244 n n C22 O23 OLC sing 245 n n C18 H18 OLC sing 246 n n C18 H18A OLC sing 247 n n C18 H18B OLC sing 248 n n C10 H10 OLC sing 249 n n C9 H9 OLC sing 250 n n C17 H17 OLC sing 251 n n C17 H17A OLC sing 252 n n C11 H11 OLC sing 253 n n C11 H11A OLC sing 254 n n C8 H8 OLC sing 255 n n C8 H8A OLC sing 256 n n C24 H24 OLC sing 257 n n C24 H24A OLC sing 258 n n C16 H16 OLC sing 259 n n C16 H16A OLC sing 260 n n C12 H12 OLC sing 261 n n C12 H12A OLC sing 262 n n C7 H7 OLC sing 263 n n C7 H7A OLC sing 264 n n C15 H15 OLC sing 265 n n C15 H15A OLC sing 266 n n C13 H13 OLC sing 267 n n C13 H13A OLC sing 268 n n C6 H6 OLC sing 269 n n C6 H6A OLC sing 270 n n C14 H14 OLC sing 271 n n C14 H14A OLC sing 272 n n C5 H5 OLC sing 273 n n C5 H5A OLC sing 274 n n C4 H4 OLC sing 275 n n C4 H4A OLC sing 276 n n C3 H3 OLC sing 277 n n C3 H3A OLC sing 278 n n C2 H2 OLC sing 279 n n C2 H2A OLC sing 280 n n C21 H21 OLC sing 281 n n C21 H21A OLC sing 282 n n C22 H22 OLC sing 283 n n O25 HO25 OLC sing 284 n n O23 HO23 OLC sing 285 n n # _atom_sites.entry_id 6NC7 _atom_sites.fract_transf_matrix[1][1] 0.007711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005458 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 501 1 OLC OLC . D 2 OLC A 1 502 5 OLC OLC . E 2 OLC A 1 503 6 OLC OLC . F 3 SO4 A 1 504 1 SO4 SO4 . G 2 OLC B 1 501 2 OLC OLC . H 2 OLC B 1 502 3 OLC OLC . I 2 OLC B 1 503 4 OLC OLC . J 2 OLC B 1 504 7 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . I 2 305.119 -114.465 1841.809 1 39.42 ? C10 OLC 503 B 1 HETATM 2 C C9 OLC . . . I 2 305.778 -113.44 1841.313 1 39.98 ? C9 OLC 503 B 1 HETATM 3 C C11 OLC . . . I 2 304.742 -114.489 1843.287 1 38.76 ? C11 OLC 503 B 1 HETATM 4 C C8 OLC . . . I 2 306.177 -112.264 1842.207 1 37.63 ? C8 OLC 503 B 1 HETATM 5 C C24 OLC . . . I 2 308.696 -99.971 1838.878 1 41.35 ? C24 OLC 503 B 1 HETATM 6 C C7 OLC . . . I 2 307.099 -111.318 1841.434 1 39.46 ? C7 OLC 503 B 1 HETATM 7 C C6 OLC . . . I 2 307.409 -110.097 1842.292 1 40.63 ? C6 OLC 503 B 1 HETATM 8 C C5 OLC . . . I 2 308.065 -109.025 1841.424 1 38.84 ? C5 OLC 503 B 1 HETATM 9 C C4 OLC . . . I 2 307.946 -107.655 1842.092 1 42.02 ? C4 OLC 503 B 1 HETATM 10 C C3 OLC . . . I 2 308.37 -106.582 1841.091 1 39.95 ? C3 OLC 503 B 1 HETATM 11 C C2 OLC . . . I 2 307.844 -105.215 1841.526 1 45.39 ? C2 OLC 503 B 1 HETATM 12 C C21 OLC . . . I 2 307.663 -102.199 1839.268 1 39.39 ? C21 OLC 503 B 1 HETATM 13 C C1 OLC . . . I 2 307.881 -104.283 1840.323 1 40.5 ? C1 OLC 503 B 1 HETATM 14 C C22 OLC . . . I 2 307.524 -100.702 1839.538 1 42.44 ? C22 OLC 503 B 1 HETATM 15 O O19 OLC . . . I 2 308.167 -104.728 1839.264 1 37.1 ? O19 OLC 503 B 1 HETATM 16 O O25 OLC . . . I 2 308.296 -98.727 1838.371 1 43.82 ? O25 OLC 503 B 1 HETATM 17 O O23 OLC . . . I 2 306.311 -100.226 1839.017 1 40.7 ? O23 OLC 503 B 1 HETATM 18 O O20 OLC . . . I 2 307.585 -102.92 1840.464 1 40.29 ? O20 OLC 503 B 1 HETATM 19 H H10 OLC . . . I 2 304.881 -115.175 1841.257 1 48.21 ? H10 OLC 503 B 1 HETATM 20 H H9 OLC . . . I 2 306.005 -113.431 1840.411 1 48.89 ? H9 OLC 503 B 1 HETATM 21 H H11A OLC . . . I 2 304.228 -115.289 1843.477 1 47.42 ? H11A OLC 503 B 1 HETATM 22 H H8 OLC . . . I 2 305.381 -111.784 1842.483 1 46.06 ? H8 OLC 503 B 1 HETATM 23 H H8A OLC . . . I 2 306.641 -112.598 1842.991 1 46.06 ? H8A OLC 503 B 1 HETATM 24 H H24 OLC . . . I 2 309.041 -100.514 1838.151 1 50.52 ? H24 OLC 503 B 1 HETATM 25 H H24A OLC . . . I 2 309.397 -99.837 1839.534 1 50.52 ? H24A OLC 503 B 1 HETATM 26 H H7 OLC . . . I 2 307.924 -111.778 1841.215 1 48.26 ? H7 OLC 503 B 1 HETATM 27 H H7A OLC . . . I 2 306.66 -111.035 1840.616 1 48.26 ? H7A OLC 503 B 1 HETATM 28 H H6 OLC . . . I 2 308.014 -110.349 1843.008 1 49.66 ? H6 OLC 503 B 1 HETATM 29 H H6A OLC . . . I 2 306.587 -109.749 1842.67 1 49.66 ? H6A OLC 503 B 1 HETATM 30 H H5 OLC . . . I 2 309.003 -109.242 1841.301 1 47.52 ? H5 OLC 503 B 1 HETATM 31 H H5A OLC . . . I 2 307.626 -109 1840.559 1 47.52 ? H5A OLC 503 B 1 HETATM 32 H H4 OLC . . . I 2 308.524 -107.62 1842.87 1 51.33 ? H4 OLC 503 B 1 HETATM 33 H H4A OLC . . . I 2 307.026 -107.503 1842.362 1 51.33 ? H4A OLC 503 B 1 HETATM 34 H H3 OLC . . . I 2 308.012 -106.8 1840.216 1 48.84 ? H3 OLC 503 B 1 HETATM 35 H H3A OLC . . . I 2 309.338 -106.553 1841.043 1 48.84 ? H3A OLC 503 B 1 HETATM 36 H H2 OLC . . . I 2 308.404 -104.859 1842.234 1 55.37 ? H2 OLC 503 B 1 HETATM 37 H H2A OLC . . . I 2 306.931 -105.302 1841.844 1 55.37 ? H2A OLC 503 B 1 HETATM 38 H H21 OLC . . . I 2 308.519 -102.371 1838.846 1 48.18 ? H21 OLC 503 B 1 HETATM 39 H H21A OLC . . . I 2 306.95 -102.485 1838.675 1 48.18 ? H21A OLC 503 B 1 HETATM 40 H H22 OLC . . . I 2 307.546 -100.544 1840.495 1 51.83 ? H22 OLC 503 B 1 HETATM 41 H HO25 OLC . . . I 2 307.448 -98.702 1838.319 1 53.49 ? HO25 OLC 503 B 1 HETATM 42 H HO23 OLC . . . I 2 305.668 -100.68 1839.337 1 49.74 ? HO23 OLC 503 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #