data_6NCJ # _model_server_result.job_id bx_RrMh9T0TYd9YtOqr6NA _model_server_result.datetime_utc '2024-12-26 15:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ncj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6NCJ # _exptl.entry_id 6NCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NCJ _cell.length_a 72.29 _cell.length_b 72.29 _cell.length_c 64.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -21.596667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6NCJ _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0.007987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 3 KJJ A 1 305 1 KJJ LG1 . G 4 SO4 A 1 306 1 SO4 SO4 . H 4 SO4 A 1 307 2 SO4 SO4 . I 5 HOH A 1 401 103 HOH HOH . I 5 HOH A 2 402 109 HOH HOH . I 5 HOH A 3 403 5 HOH HOH . I 5 HOH A 4 404 102 HOH HOH . I 5 HOH A 5 405 6 HOH HOH . I 5 HOH A 6 406 56 HOH HOH . I 5 HOH A 7 407 2 HOH HOH . I 5 HOH A 8 408 19 HOH HOH . I 5 HOH A 9 409 66 HOH HOH . I 5 HOH A 10 410 52 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 1 HOH HOH . I 5 HOH A 13 413 81 HOH HOH . I 5 HOH A 14 414 14 HOH HOH . I 5 HOH A 15 415 108 HOH HOH . I 5 HOH A 16 416 57 HOH HOH . I 5 HOH A 17 417 53 HOH HOH . I 5 HOH A 18 418 59 HOH HOH . I 5 HOH A 19 419 71 HOH HOH . I 5 HOH A 20 420 43 HOH HOH . I 5 HOH A 21 421 20 HOH HOH . I 5 HOH A 22 422 88 HOH HOH . I 5 HOH A 23 423 7 HOH HOH . I 5 HOH A 24 424 76 HOH HOH . I 5 HOH A 25 425 40 HOH HOH . I 5 HOH A 26 426 107 HOH HOH . I 5 HOH A 27 427 74 HOH HOH . I 5 HOH A 28 428 13 HOH HOH . I 5 HOH A 29 429 73 HOH HOH . I 5 HOH A 30 430 17 HOH HOH . I 5 HOH A 31 431 3 HOH HOH . I 5 HOH A 32 432 25 HOH HOH . I 5 HOH A 33 433 22 HOH HOH . I 5 HOH A 34 434 62 HOH HOH . I 5 HOH A 35 435 78 HOH HOH . I 5 HOH A 36 436 27 HOH HOH . I 5 HOH A 37 437 98 HOH HOH . I 5 HOH A 38 438 10 HOH HOH . I 5 HOH A 39 439 24 HOH HOH . I 5 HOH A 40 440 44 HOH HOH . I 5 HOH A 41 441 82 HOH HOH . I 5 HOH A 42 442 45 HOH HOH . I 5 HOH A 43 443 46 HOH HOH . I 5 HOH A 44 444 36 HOH HOH . I 5 HOH A 45 445 64 HOH HOH . I 5 HOH A 46 446 77 HOH HOH . I 5 HOH A 47 447 33 HOH HOH . I 5 HOH A 48 448 39 HOH HOH . I 5 HOH A 49 449 50 HOH HOH . I 5 HOH A 50 450 60 HOH HOH . I 5 HOH A 51 451 58 HOH HOH . I 5 HOH A 52 452 67 HOH HOH . I 5 HOH A 53 453 8 HOH HOH . I 5 HOH A 54 454 26 HOH HOH . I 5 HOH A 55 455 96 HOH HOH . I 5 HOH A 56 456 32 HOH HOH . I 5 HOH A 57 457 93 HOH HOH . I 5 HOH A 58 458 35 HOH HOH . I 5 HOH A 59 459 31 HOH HOH . I 5 HOH A 60 460 34 HOH HOH . I 5 HOH A 61 461 16 HOH HOH . I 5 HOH A 62 462 51 HOH HOH . I 5 HOH A 63 463 21 HOH HOH . I 5 HOH A 64 464 30 HOH HOH . I 5 HOH A 65 465 104 HOH HOH . I 5 HOH A 66 466 100 HOH HOH . I 5 HOH A 67 467 97 HOH HOH . I 5 HOH A 68 468 101 HOH HOH . I 5 HOH A 69 469 55 HOH HOH . I 5 HOH A 70 470 15 HOH HOH . I 5 HOH A 71 471 61 HOH HOH . I 5 HOH A 72 472 47 HOH HOH . I 5 HOH A 73 473 86 HOH HOH . I 5 HOH A 74 474 49 HOH HOH . I 5 HOH A 75 475 65 HOH HOH . I 5 HOH A 76 476 29 HOH HOH . I 5 HOH A 77 477 84 HOH HOH . I 5 HOH A 78 478 99 HOH HOH . I 5 HOH A 79 479 11 HOH HOH . I 5 HOH A 80 480 70 HOH HOH . I 5 HOH A 81 481 38 HOH HOH . I 5 HOH A 82 482 83 HOH HOH . I 5 HOH A 83 483 89 HOH HOH . I 5 HOH A 84 484 54 HOH HOH . I 5 HOH A 85 485 42 HOH HOH . I 5 HOH A 86 486 41 HOH HOH . I 5 HOH A 87 487 75 HOH HOH . I 5 HOH A 88 488 94 HOH HOH . I 5 HOH A 89 489 37 HOH HOH . I 5 HOH A 90 490 105 HOH HOH . I 5 HOH A 91 491 63 HOH HOH . I 5 HOH A 92 492 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -35.257 2.591 -9.793 1 38.59 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 2 -35.878 3.805 -9.384 1 35.56 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 2 -34.24 2.02 -8.746 1 37.64 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 2 -34.876 1.242 -7.724 1 35.67 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #