data_6NCJ # _model_server_result.job_id SWpM179D_SoBaW_hD_gZBQ _model_server_result.datetime_utc '2024-12-26 15:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ncj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6NCJ # _exptl.entry_id 6NCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.709 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[4-(8-fluoranyl-5-methyl-3,4-dihydro-2~{H}-chromen-6-yl)-2-methyl-6-[[(1~{S},2~{R})-2-phenylcyclopropyl]methyl]-7,8-dihydro-5~{H}-1,6-naphthyridin-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NCJ _cell.length_a 72.29 _cell.length_b 72.29 _cell.length_c 64.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -21.596667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H41 F N2 O4' _chem_comp.formula_weight 572.709 _chem_comp.id KJJ _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[4-(8-fluoranyl-5-methyl-3,4-dihydro-2~{H}-chromen-6-yl)-2-methyl-6-[[(1~{S},2~{R})-2-phenylcyclopropyl]methyl]-7,8-dihydro-5~{H}-1,6-naphthyridin-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 KJJ sing 182 n n C8 C7 KJJ sing 183 n n C9 C10 KJJ sing 184 n n C1 C2 KJJ sing 185 n n O21 C20 KJJ doub 186 n n C10 O11 KJJ sing 187 n n O22 C20 KJJ sing 188 n n C7 C2 KJJ doub 189 n y C7 C6 KJJ sing 190 n y C20 C19 KJJ sing 191 n n C2 C3 KJJ sing 192 n y C35 C36 KJJ sing 193 n n C35 C34 KJJ sing 194 n n C38 C39 KJJ doub 195 n y C38 C37 KJJ sing 196 n y C39 C40 KJJ sing 197 n y O11 C6 KJJ sing 198 n n C6 C5 KJJ doub 199 n y C36 C37 KJJ sing 200 n n C36 C34 KJJ sing 201 n n C19 C18 KJJ sing 202 n n C19 O23 KJJ sing 203 n n C3 C13 KJJ sing 204 n n C3 C4 KJJ doub 205 n y C37 C42 KJJ doub 206 n y C34 C33 KJJ sing 207 n n C13 C18 KJJ doub 208 n y C13 C14 KJJ sing 209 n y C18 C17 KJJ sing 210 n y C40 C41 KJJ doub 211 n y N31 C32 KJJ sing 212 n n N31 C33 KJJ sing 213 n n N31 C30 KJJ sing 214 n n C32 C14 KJJ sing 215 n n C14 C15 KJJ doub 216 n y C17 C28 KJJ sing 217 n n C17 N16 KJJ doub 218 n y C15 N16 KJJ sing 219 n y C15 C29 KJJ sing 220 n n O23 C24 KJJ sing 221 n n C5 C4 KJJ sing 222 n y C5 F12 KJJ sing 223 n n C29 C30 KJJ sing 224 n n C42 C41 KJJ sing 225 n y C25 C24 KJJ sing 226 n n C24 C26 KJJ sing 227 n n C24 C27 KJJ sing 228 n n C19 H1 KJJ sing 229 n n C34 H2 KJJ sing 230 n n C27 H3 KJJ sing 231 n n C27 H4 KJJ sing 232 n n C27 H5 KJJ sing 233 n n C33 H6 KJJ sing 234 n n C33 H7 KJJ sing 235 n n C1 H8 KJJ sing 236 n n C1 H9 KJJ sing 237 n n C1 H10 KJJ sing 238 n n C4 H11 KJJ sing 239 n n C8 H12 KJJ sing 240 n n C8 H13 KJJ sing 241 n n C9 H14 KJJ sing 242 n n C9 H15 KJJ sing 243 n n C10 H16 KJJ sing 244 n n C10 H17 KJJ sing 245 n n O22 H18 KJJ sing 246 n n C25 H19 KJJ sing 247 n n C25 H20 KJJ sing 248 n n C25 H21 KJJ sing 249 n n C26 H22 KJJ sing 250 n n C26 H23 KJJ sing 251 n n C26 H24 KJJ sing 252 n n C28 H25 KJJ sing 253 n n C28 H26 KJJ sing 254 n n C28 H27 KJJ sing 255 n n C29 H28 KJJ sing 256 n n C29 H29 KJJ sing 257 n n C30 H30 KJJ sing 258 n n C30 H31 KJJ sing 259 n n C32 H33 KJJ sing 260 n n C32 H34 KJJ sing 261 n n C35 H35 KJJ sing 262 n n C35 H36 KJJ sing 263 n n C36 H37 KJJ sing 264 n n C38 H38 KJJ sing 265 n n C39 H39 KJJ sing 266 n n C40 H40 KJJ sing 267 n n C41 H41 KJJ sing 268 n n C42 H42 KJJ sing 269 n n # _atom_sites.entry_id 6NCJ _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0.007987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 3 KJJ A 1 305 1 KJJ LG1 . G 4 SO4 A 1 306 1 SO4 SO4 . H 4 SO4 A 1 307 2 SO4 SO4 . I 5 HOH A 1 401 103 HOH HOH . I 5 HOH A 2 402 109 HOH HOH . I 5 HOH A 3 403 5 HOH HOH . I 5 HOH A 4 404 102 HOH HOH . I 5 HOH A 5 405 6 HOH HOH . I 5 HOH A 6 406 56 HOH HOH . I 5 HOH A 7 407 2 HOH HOH . I 5 HOH A 8 408 19 HOH HOH . I 5 HOH A 9 409 66 HOH HOH . I 5 HOH A 10 410 52 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 1 HOH HOH . I 5 HOH A 13 413 81 HOH HOH . I 5 HOH A 14 414 14 HOH HOH . I 5 HOH A 15 415 108 HOH HOH . I 5 HOH A 16 416 57 HOH HOH . I 5 HOH A 17 417 53 HOH HOH . I 5 HOH A 18 418 59 HOH HOH . I 5 HOH A 19 419 71 HOH HOH . I 5 HOH A 20 420 43 HOH HOH . I 5 HOH A 21 421 20 HOH HOH . I 5 HOH A 22 422 88 HOH HOH . I 5 HOH A 23 423 7 HOH HOH . I 5 HOH A 24 424 76 HOH HOH . I 5 HOH A 25 425 40 HOH HOH . I 5 HOH A 26 426 107 HOH HOH . I 5 HOH A 27 427 74 HOH HOH . I 5 HOH A 28 428 13 HOH HOH . I 5 HOH A 29 429 73 HOH HOH . I 5 HOH A 30 430 17 HOH HOH . I 5 HOH A 31 431 3 HOH HOH . I 5 HOH A 32 432 25 HOH HOH . I 5 HOH A 33 433 22 HOH HOH . I 5 HOH A 34 434 62 HOH HOH . I 5 HOH A 35 435 78 HOH HOH . I 5 HOH A 36 436 27 HOH HOH . I 5 HOH A 37 437 98 HOH HOH . I 5 HOH A 38 438 10 HOH HOH . I 5 HOH A 39 439 24 HOH HOH . I 5 HOH A 40 440 44 HOH HOH . I 5 HOH A 41 441 82 HOH HOH . I 5 HOH A 42 442 45 HOH HOH . I 5 HOH A 43 443 46 HOH HOH . I 5 HOH A 44 444 36 HOH HOH . I 5 HOH A 45 445 64 HOH HOH . I 5 HOH A 46 446 77 HOH HOH . I 5 HOH A 47 447 33 HOH HOH . I 5 HOH A 48 448 39 HOH HOH . I 5 HOH A 49 449 50 HOH HOH . I 5 HOH A 50 450 60 HOH HOH . I 5 HOH A 51 451 58 HOH HOH . I 5 HOH A 52 452 67 HOH HOH . I 5 HOH A 53 453 8 HOH HOH . I 5 HOH A 54 454 26 HOH HOH . I 5 HOH A 55 455 96 HOH HOH . I 5 HOH A 56 456 32 HOH HOH . I 5 HOH A 57 457 93 HOH HOH . I 5 HOH A 58 458 35 HOH HOH . I 5 HOH A 59 459 31 HOH HOH . I 5 HOH A 60 460 34 HOH HOH . I 5 HOH A 61 461 16 HOH HOH . I 5 HOH A 62 462 51 HOH HOH . I 5 HOH A 63 463 21 HOH HOH . I 5 HOH A 64 464 30 HOH HOH . I 5 HOH A 65 465 104 HOH HOH . I 5 HOH A 66 466 100 HOH HOH . I 5 HOH A 67 467 97 HOH HOH . I 5 HOH A 68 468 101 HOH HOH . I 5 HOH A 69 469 55 HOH HOH . I 5 HOH A 70 470 15 HOH HOH . I 5 HOH A 71 471 61 HOH HOH . I 5 HOH A 72 472 47 HOH HOH . I 5 HOH A 73 473 86 HOH HOH . I 5 HOH A 74 474 49 HOH HOH . I 5 HOH A 75 475 65 HOH HOH . I 5 HOH A 76 476 29 HOH HOH . I 5 HOH A 77 477 84 HOH HOH . I 5 HOH A 78 478 99 HOH HOH . I 5 HOH A 79 479 11 HOH HOH . I 5 HOH A 80 480 70 HOH HOH . I 5 HOH A 81 481 38 HOH HOH . I 5 HOH A 82 482 83 HOH HOH . I 5 HOH A 83 483 89 HOH HOH . I 5 HOH A 84 484 54 HOH HOH . I 5 HOH A 85 485 42 HOH HOH . I 5 HOH A 86 486 41 HOH HOH . I 5 HOH A 87 487 75 HOH HOH . I 5 HOH A 88 488 94 HOH HOH . I 5 HOH A 89 489 37 HOH HOH . I 5 HOH A 90 490 105 HOH HOH . I 5 HOH A 91 491 63 HOH HOH . I 5 HOH A 92 492 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 KJJ . . . F 3 -26.638 14.898 -17.266 1 26.42 ? C13 KJJ 305 A 1 HETATM 2 C C18 KJJ . . . F 3 -25.746 13.81 -17.237 1 24.57 ? C18 KJJ 305 A 1 HETATM 3 C C17 KJJ . . . F 3 -24.386 14.048 -16.946 1 25.13 ? C17 KJJ 305 A 1 HETATM 4 C C15 KJJ . . . F 3 -24.813 16.373 -16.677 1 27.63 ? C15 KJJ 305 A 1 HETATM 5 C C19 KJJ . . . F 3 -26.24 12.406 -17.561 1 23.81 ? C19 KJJ 305 A 1 HETATM 6 C C20 KJJ . . . F 3 -25.727 12.011 -18.925 1 25.02 ? C20 KJJ 305 A 1 HETATM 7 C C24 KJJ . . . F 3 -26.466 11.186 -15.374 1 21.64 ? C24 KJJ 305 A 1 HETATM 8 C C34 KJJ . . . F 3 -26.981 21.222 -17.308 1 33.4 ? C34 KJJ 305 A 1 HETATM 9 C C27 KJJ . . . F 3 -26.275 12.318 -14.354 1 22.2 ? C27 KJJ 305 A 1 HETATM 10 C C33 KJJ . . . F 3 -27.467 19.823 -16.878 1 31.14 ? C33 KJJ 305 A 1 HETATM 11 C C1 KJJ . . . F 3 -27.814 14.96 -20.077 1 24.64 ? C1 KJJ 305 A 1 HETATM 12 C C2 KJJ . . . F 3 -28.648 14.662 -18.842 1 25.73 ? C2 KJJ 305 A 1 HETATM 13 C C3 KJJ . . . F 3 -28.091 14.678 -17.556 1 25.35 ? C3 KJJ 305 A 1 HETATM 14 C C4 KJJ . . . F 3 -28.885 14.404 -16.433 1 25.19 ? C4 KJJ 305 A 1 HETATM 15 C C5 KJJ . . . F 3 -30.233 14.11 -16.575 1 25.8 ? C5 KJJ 305 A 1 HETATM 16 C C6 KJJ . . . F 3 -30.799 14.081 -17.852 1 25 ? C6 KJJ 305 A 1 HETATM 17 C C7 KJJ . . . F 3 -30.015 14.372 -18.987 1 25.43 ? C7 KJJ 305 A 1 HETATM 18 C C8 KJJ . . . F 3 -30.627 14.354 -20.388 1 24.75 ? C8 KJJ 305 A 1 HETATM 19 C C9 KJJ . . . F 3 -32.155 14.43 -20.32 1 24.39 ? C9 KJJ 305 A 1 HETATM 20 C C10 KJJ . . . F 3 -32.663 13.448 -19.255 1 23.5 ? C10 KJJ 305 A 1 HETATM 21 O O11 KJJ . . . F 3 -32.094 13.809 -17.962 1 24.48 ? O11 KJJ 305 A 1 HETATM 22 F F12 KJJ . . . F 3 -30.962 13.856 -15.49 1 23.91 ? F12 KJJ 305 A 1 HETATM 23 C C14 KJJ . . . F 3 -26.178 16.207 -17.03 1 27.17 ? C14 KJJ 305 A 1 HETATM 24 N N16 KJJ . . . F 3 -23.989 15.302 -16.641 1 24.12 ? N16 KJJ 305 A 1 HETATM 25 O O21 KJJ . . . F 3 -25.453 12.866 -19.757 1 26.53 ? O21 KJJ 305 A 1 HETATM 26 O O22 KJJ . . . F 3 -25.549 10.735 -19.202 1 24.55 ? O22 KJJ 305 A 1 HETATM 27 O O23 KJJ . . . F 3 -25.787 11.417 -16.623 1 22.52 ? O23 KJJ 305 A 1 HETATM 28 C C25 KJJ . . . F 3 -27.969 10.903 -15.537 1 20.64 ? C25 KJJ 305 A 1 HETATM 29 C C26 KJJ . . . F 3 -25.778 9.931 -14.815 1 22.75 ? C26 KJJ 305 A 1 HETATM 30 C C28 KJJ . . . F 3 -23.298 12.98 -16.861 1 24.78 ? C28 KJJ 305 A 1 HETATM 31 C C29 KJJ . . . F 3 -24.208 17.753 -16.391 1 28.91 ? C29 KJJ 305 A 1 HETATM 32 C C30 KJJ . . . F 3 -25.27 18.851 -16.193 1 27.82 ? C30 KJJ 305 A 1 HETATM 33 N N31 KJJ . . . F 3 -26.448 18.749 -17.099 1 29.09 ? N31 KJJ 305 A 1 HETATM 34 C C32 KJJ . . . F 3 -27.113 17.41 -17.066 1 27.22 ? C32 KJJ 305 A 1 HETATM 35 C C35 KJJ . . . F 3 -27.216 21.625 -18.769 1 32.42 ? C35 KJJ 305 A 1 HETATM 36 C C36 KJJ . . . F 3 -27.994 22.322 -17.641 1 32.82 ? C36 KJJ 305 A 1 HETATM 37 C C37 KJJ . . . F 3 -29.489 22.067 -17.516 1 31.05 ? C37 KJJ 305 A 1 HETATM 38 C C38 KJJ . . . F 3 -30.257 21.609 -18.602 1 31.17 ? C38 KJJ 305 A 1 HETATM 39 C C39 KJJ . . . F 3 -31.634 21.38 -18.456 1 29.37 ? C39 KJJ 305 A 1 HETATM 40 C C40 KJJ . . . F 3 -32.263 21.643 -17.234 1 27.8 ? C40 KJJ 305 A 1 HETATM 41 C C41 KJJ . . . F 3 -31.499 22.106 -16.151 1 29.32 ? C41 KJJ 305 A 1 HETATM 42 C C42 KJJ . . . F 3 -30.118 22.318 -16.294 1 29.5 ? C42 KJJ 305 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #