data_6ND2 # _model_server_result.job_id uwYHulxdh8SBPMqTKQiHbw _model_server_result.datetime_utc '2024-11-25 06:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6ND2 # _exptl.entry_id 6ND2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ND2 _cell.length_a 78.878 _cell.length_b 78.878 _cell.length_c 107.908 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ND2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 169 n n C1 C2 GOL sing 170 n n C1 H11 GOL sing 171 n n C1 H12 GOL sing 172 n n O1 HO1 GOL sing 173 n n C2 O2 GOL sing 174 n n C2 C3 GOL sing 175 n n C2 H2 GOL sing 176 n n O2 HO2 GOL sing 177 n n C3 O3 GOL sing 178 n n C3 H31 GOL sing 179 n n C3 H32 GOL sing 180 n n O3 HO3 GOL sing 181 n n # _atom_sites.entry_id 6ND2 _atom_sites.fract_transf_matrix[1][1] 0.012678 _atom_sites.fract_transf_matrix[1][2] 0.00732 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL X 1 201 221 GOL GOL . C 3 G8J X 1 202 1 G8J DRG . D 4 XNP X 1 203 1 XNP ANH . E 5 HOH X 1 301 3 HOH HOH . E 5 HOH X 2 302 2 HOH HOH . E 5 HOH X 3 303 6 HOH HOH . E 5 HOH X 4 304 26 HOH HOH . E 5 HOH X 5 305 16 HOH HOH . E 5 HOH X 6 306 27 HOH HOH . E 5 HOH X 7 307 9 HOH HOH . E 5 HOH X 8 308 23 HOH HOH . E 5 HOH X 9 309 37 HOH HOH . E 5 HOH X 10 310 36 HOH HOH . E 5 HOH X 11 311 19 HOH HOH . E 5 HOH X 12 312 39 HOH HOH . E 5 HOH X 13 313 22 HOH HOH . E 5 HOH X 14 314 7 HOH HOH . E 5 HOH X 15 315 21 HOH HOH . E 5 HOH X 16 316 25 HOH HOH . E 5 HOH X 17 317 30 HOH HOH . E 5 HOH X 18 318 24 HOH HOH . E 5 HOH X 19 319 17 HOH HOH . E 5 HOH X 20 320 14 HOH HOH . E 5 HOH X 21 321 8 HOH HOH . E 5 HOH X 22 322 4 HOH HOH . E 5 HOH X 23 323 29 HOH HOH . E 5 HOH X 24 324 1 HOH HOH . E 5 HOH X 25 325 15 HOH HOH . E 5 HOH X 26 326 10 HOH HOH . E 5 HOH X 27 327 5 HOH HOH . E 5 HOH X 28 328 34 HOH HOH . E 5 HOH X 29 329 35 HOH HOH . E 5 HOH X 30 330 20 HOH HOH . E 5 HOH X 31 331 11 HOH HOH . E 5 HOH X 32 332 13 HOH HOH . E 5 HOH X 33 333 31 HOH HOH . E 5 HOH X 34 334 33 HOH HOH . E 5 HOH X 35 335 12 HOH HOH . E 5 HOH X 36 336 28 HOH HOH . E 5 HOH X 37 337 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -12.996 -4.629 44.384 1 46.83 ? C1 GOL 201 X 1 HETATM 2 O O1 GOL . . . B 2 -12.118 -4.007 43.459 1 53.13 ? O1 GOL 201 X 1 HETATM 3 C C2 GOL . . . B 2 -12.438 -6.015 44.711 1 45.84 ? C2 GOL 201 X 1 HETATM 4 O O2 GOL . . . B 2 -12.338 -6.206 46.116 1 48.31 ? O2 GOL 201 X 1 HETATM 5 C C3 GOL . . . B 2 -11.07 -6.178 44.055 1 40.98 ? C3 GOL 201 X 1 HETATM 6 O O3 GOL . . . B 2 -10.556 -7.482 44.253 1 36.19 ? O3 GOL 201 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #