data_6ND2
#
_model_server_result.job_id            0IhN-zIzpED1nzpiltpv4g 
_model_server_result.datetime_utc      '2024-11-28 22:55:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6ND2 
#
_exptl.entry_id    6ND2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.451 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ethyl-5-{(3S)-3-[2-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ND2 
_cell.length_a            78.878 
_cell.length_b            78.878 
_cell.length_c            107.908 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ND2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H23 N5 O' 
_chem_comp.formula_weight    373.451 
_chem_comp.id                G8J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ethyl-5-{(3S)-3-[2-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAH C6 G8J sing 70 n n 
N1 C6 G8J doub 71 n y 
N1 C2 G8J sing 72 n y 
C6 C5 G8J sing 73 n y 
CAZ CAM G8J sing 74 n n 
NAG C2 G8J sing 75 n n 
C2 N3 G8J doub 76 n y 
C5 CAK G8J sing 77 n n 
C5 C4 G8J doub 78 n y 
CAK CAL G8J trip 79 n n 
CAL CAM G8J sing 80 n n 
CAM CAN G8J sing 81 n n 
N3 C4 G8J sing 82 n y 
C4 CAI G8J sing 83 n n 
OBA CAS G8J sing 84 n n 
OBA CBB G8J sing 85 n n 
CAN CAS G8J doub 86 n y 
CAN CAO G8J sing 87 n y 
CAS CAR G8J sing 88 n y 
CAO CAP G8J doub 89 n y 
CAI CAJ G8J sing 90 n n 
CAU CAV G8J doub 91 n y 
CAU CAT G8J sing 92 n y 
CAR CAQ G8J doub 93 n y 
CAP CAQ G8J sing 94 n y 
CAP CAT G8J sing 95 n n 
CAV NAW G8J sing 96 n y 
CAT CAY G8J doub 97 n y 
NAW CAX G8J doub 98 n y 
CAY CAX G8J sing 99 n y 
CAJ H1 G8J sing 100 n n 
CAJ H2 G8J sing 101 n n 
CAJ H3 G8J sing 102 n n 
CAI H4 G8J sing 103 n n 
CAI H5 G8J sing 104 n n 
NAG H6 G8J sing 105 n n 
NAG H7 G8J sing 106 n n 
NAH H8 G8J sing 107 n n 
NAH H9 G8J sing 108 n n 
CAM H10 G8J sing 109 n n 
CAZ H11 G8J sing 110 n n 
CAZ H12 G8J sing 111 n n 
CAZ H13 G8J sing 112 n n 
CAO H14 G8J sing 113 n n 
CBB H15 G8J sing 114 n n 
CBB H16 G8J sing 115 n n 
CBB H17 G8J sing 116 n n 
CAR H18 G8J sing 117 n n 
CAQ H19 G8J sing 118 n n 
CAU H20 G8J sing 119 n n 
CAV H21 G8J sing 120 n n 
CAX H22 G8J sing 121 n n 
CAY H23 G8J sing 122 n n 
#
_atom_sites.entry_id                     6ND2 
_atom_sites.fract_transf_matrix[1][1]    0.012678 
_atom_sites.fract_transf_matrix[1][2]    0.00732 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL X 1 201 221 GOL GOL . 
C 3 G8J X 1 202 1 G8J DRG . 
D 4 XNP X 1 203 1 XNP ANH . 
E 5 HOH X 1 301 3 HOH HOH . 
E 5 HOH X 2 302 2 HOH HOH . 
E 5 HOH X 3 303 6 HOH HOH . 
E 5 HOH X 4 304 26 HOH HOH . 
E 5 HOH X 5 305 16 HOH HOH . 
E 5 HOH X 6 306 27 HOH HOH . 
E 5 HOH X 7 307 9 HOH HOH . 
E 5 HOH X 8 308 23 HOH HOH . 
E 5 HOH X 9 309 37 HOH HOH . 
E 5 HOH X 10 310 36 HOH HOH . 
E 5 HOH X 11 311 19 HOH HOH . 
E 5 HOH X 12 312 39 HOH HOH . 
E 5 HOH X 13 313 22 HOH HOH . 
E 5 HOH X 14 314 7 HOH HOH . 
E 5 HOH X 15 315 21 HOH HOH . 
E 5 HOH X 16 316 25 HOH HOH . 
E 5 HOH X 17 317 30 HOH HOH . 
E 5 HOH X 18 318 24 HOH HOH . 
E 5 HOH X 19 319 17 HOH HOH . 
E 5 HOH X 20 320 14 HOH HOH . 
E 5 HOH X 21 321 8 HOH HOH . 
E 5 HOH X 22 322 4 HOH HOH . 
E 5 HOH X 23 323 29 HOH HOH . 
E 5 HOH X 24 324 1 HOH HOH . 
E 5 HOH X 25 325 15 HOH HOH . 
E 5 HOH X 26 326 10 HOH HOH . 
E 5 HOH X 27 327 5 HOH HOH . 
E 5 HOH X 28 328 34 HOH HOH . 
E 5 HOH X 29 329 35 HOH HOH . 
E 5 HOH X 30 330 20 HOH HOH . 
E 5 HOH X 31 331 11 HOH HOH . 
E 5 HOH X 32 332 13 HOH HOH . 
E 5 HOH X 33 333 31 HOH HOH . 
E 5 HOH X 34 334 33 HOH HOH . 
E 5 HOH X 35 335 12 HOH HOH . 
E 5 HOH X 36 336 28 HOH HOH . 
E 5 HOH X 37 337 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 G8J . . . C 3 -28.348 -9.021 41.848 1 25.01 ? C4 G8J 202 X 1 
HETATM 2 C C5 G8J . . . C 3 -27.834 -10.234 41.391 1 27.37 ? C5 G8J 202 X 1 
HETATM 3 C C6 G8J . . . C 3 -26.924 -10.215 40.324 1 25.78 ? C6 G8J 202 X 1 
HETATM 4 N N1 G8J . . . C 3 -26.589 -9.05 39.756 1 24.93 ? N1 G8J 202 X 1 
HETATM 5 N N3 G8J . . . C 3 -27.98 -7.884 41.246 1 22.56 ? N3 G8J 202 X 1 
HETATM 6 C CAJ G8J . . . C 3 -30.559 -8.353 42.475 1 31.85 ? CAJ G8J 202 X 1 
HETATM 7 C CAI G8J . . . C 3 -29.236 -9 42.913 1 23.23 ? CAI G8J 202 X 1 
HETATM 8 C C2 G8J . . . C 3 -27.106 -7.892 40.221 1 29.47 ? C2 G8J 202 X 1 
HETATM 9 N NAG G8J . . . C 3 -26.745 -6.733 39.651 1 28.93 ? NAG G8J 202 X 1 
HETATM 10 N NAH G8J . . . C 3 -26.406 -11.369 39.899 1 22.81 ? NAH G8J 202 X 1 
HETATM 11 C CAK G8J . . . C 3 -28.251 -11.454 42.074 1 26.58 ? CAK G8J 202 X 1 
HETATM 12 C CAL G8J . . . C 3 -28.672 -12.557 42.753 1 25.98 ? CAL G8J 202 X 1 
HETATM 13 C CAM G8J . . . C 3 -29.166 -13.697 43.489 1 23.49 ? CAM G8J 202 X 1 
HETATM 14 C CAZ G8J . . . C 3 -29.023 -14.904 42.616 1 26.85 ? CAZ G8J 202 X 1 
HETATM 15 C CAN G8J . . . C 3 -30.544 -13.562 43.739 1 31.73 ? CAN G8J 202 X 1 
HETATM 16 C CAO G8J . . . C 3 -31.398 -12.865 42.855 1 26.14 ? CAO G8J 202 X 1 
HETATM 17 C CAS G8J . . . C 3 -31.08 -14.144 44.885 1 27.88 ? CAS G8J 202 X 1 
HETATM 18 O OBA G8J . . . C 3 -30.205 -14.804 45.706 1 28.78 ? OBA G8J 202 X 1 
HETATM 19 C CBB G8J . . . C 3 -30.767 -15.144 46.974 1 27.72 ? CBB G8J 202 X 1 
HETATM 20 C CAR G8J . . . C 3 -32.445 -14.019 45.16 1 31.41 ? CAR G8J 202 X 1 
HETATM 21 C CAQ G8J . . . C 3 -33.286 -13.335 44.275 1 25.78 ? CAQ G8J 202 X 1 
HETATM 22 C CAP G8J . . . C 3 -32.776 -12.749 43.112 1 33.9 ? CAP G8J 202 X 1 
HETATM 23 C CAT G8J . . . C 3 -33.655 -12.073 42.231 1 33.67 ? CAT G8J 202 X 1 
HETATM 24 C CAU G8J . . . C 3 -35.035 -12.204 42.371 1 40.9 ? CAU G8J 202 X 1 
HETATM 25 C CAV G8J . . . C 3 -35.901 -11.564 41.482 1 43.03 ? CAV G8J 202 X 1 
HETATM 26 N NAW G8J . . . C 3 -35.409 -10.764 40.431 1 39.8 ? NAW G8J 202 X 1 
HETATM 27 C CAX G8J . . . C 3 -34.032 -10.643 40.279 1 38.65 ? CAX G8J 202 X 1 
HETATM 28 C CAY G8J . . . C 3 -33.182 -11.308 41.166 1 37.52 ? CAY G8J 202 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#