data_6ND2
#
_model_server_result.job_id            0LqCEVAk7CfiSkOVqHAUVA 
_model_server_result.datetime_utc      '2024-11-02 15:31:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6ND2 
#
_exptl.entry_id    6ND2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Tricyclic NADPH' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ND2 
_cell.length_a            78.878 
_cell.length_b            78.878 
_cell.length_c            107.908 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ND2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                XNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Tricyclic NADPH' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3' C3' XNP sing 429 n n 
C3' C2' XNP sing 430 n n 
C3' C4' XNP sing 431 n n 
C2' O2' XNP sing 432 n n 
C2' C1' XNP sing 433 n n 
O2' CAA XNP sing 434 n n 
CAA CAB XNP sing 435 n n 
CAA NAF XNP sing 436 n n 
CAB CAC XNP sing 437 n n 
CAC CAD XNP sing 438 n n 
CAD CBT XNP sing 439 n n 
CAD CAE XNP doub 440 n n 
CBT OBV XNP doub 441 n n 
CBT NBU XNP sing 442 n n 
CAE NAF XNP sing 443 n n 
NAF C1' XNP sing 444 n n 
C1' O4' XNP sing 445 n n 
O4' C4' XNP sing 446 n n 
C4' C5' XNP sing 447 n n 
C5' O5' XNP sing 448 n n 
O5' PAN XNP sing 449 n n 
PAN OBP XNP doub 450 n n 
PAN OBO XNP sing 451 n n 
PAN OAO XNP sing 452 n n 
OAO PAP XNP sing 453 n n 
PAP OBQ XNP doub 454 n n 
PAP OBR XNP sing 455 n n 
PAP OAQ XNP sing 456 n n 
OAQ CAR XNP sing 457 n n 
CAR CAS XNP sing 458 n n 
CAS OAW XNP sing 459 n n 
CAS CAT XNP sing 460 n n 
OAW CAV XNP sing 461 n n 
CAT OAZ XNP sing 462 n n 
CAT CAU XNP sing 463 n n 
CAU OAY XNP sing 464 n n 
CAU CAV XNP sing 465 n n 
OAY PBA XNP sing 466 n n 
PBA OBB XNP doub 467 n n 
PBA OBC XNP sing 468 n n 
PBA OBD XNP sing 469 n n 
CAV NAX XNP sing 470 n n 
NAX CBE XNP sing 471 n y 
NAX CBH XNP sing 472 n y 
CBE NBF XNP doub 473 n y 
NBF CBG XNP sing 474 n y 
CBG CBH XNP doub 475 n y 
CBG CBI XNP sing 476 n y 
CBH NBL XNP sing 477 n y 
NBL CBK XNP doub 478 n y 
CBK NBJ XNP sing 479 n y 
NBJ CBI XNP doub 480 n y 
CBI NBM XNP sing 481 n n 
O3' H1 XNP sing 482 n n 
C3' H2 XNP sing 483 n n 
C2' H3 XNP sing 484 n n 
CAA H4 XNP sing 485 n n 
CAB H5 XNP sing 486 n n 
CAB H6 XNP sing 487 n n 
CAC H7 XNP sing 488 n n 
CAC H8 XNP sing 489 n n 
NBU H9 XNP sing 490 n n 
NBU H10 XNP sing 491 n n 
CAE H11 XNP sing 492 n n 
C1' H12 XNP sing 493 n n 
C4' H13 XNP sing 494 n n 
C5' H14 XNP sing 495 n n 
C5' H15 XNP sing 496 n n 
OBO H16 XNP sing 497 n n 
OBR H17 XNP sing 498 n n 
CAR H18 XNP sing 499 n n 
CAR H19 XNP sing 500 n n 
CAS H20 XNP sing 501 n n 
CAT H21 XNP sing 502 n n 
OAZ H22 XNP sing 503 n n 
CAU H23 XNP sing 504 n n 
OBC H24 XNP sing 505 n n 
OBD H25 XNP sing 506 n n 
CAV H26 XNP sing 507 n n 
CBE H27 XNP sing 508 n n 
CBK H30 XNP sing 509 n n 
NBM H31 XNP sing 510 n n 
NBM H32 XNP sing 511 n n 
#
_atom_sites.entry_id                     6ND2 
_atom_sites.fract_transf_matrix[1][1]    0.012678 
_atom_sites.fract_transf_matrix[1][2]    0.00732 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL X 1 201 221 GOL GOL . 
C 3 G8J X 1 202 1 G8J DRG . 
D 4 XNP X 1 203 1 XNP ANH . 
E 5 HOH X 1 301 3 HOH HOH . 
E 5 HOH X 2 302 2 HOH HOH . 
E 5 HOH X 3 303 6 HOH HOH . 
E 5 HOH X 4 304 26 HOH HOH . 
E 5 HOH X 5 305 16 HOH HOH . 
E 5 HOH X 6 306 27 HOH HOH . 
E 5 HOH X 7 307 9 HOH HOH . 
E 5 HOH X 8 308 23 HOH HOH . 
E 5 HOH X 9 309 37 HOH HOH . 
E 5 HOH X 10 310 36 HOH HOH . 
E 5 HOH X 11 311 19 HOH HOH . 
E 5 HOH X 12 312 39 HOH HOH . 
E 5 HOH X 13 313 22 HOH HOH . 
E 5 HOH X 14 314 7 HOH HOH . 
E 5 HOH X 15 315 21 HOH HOH . 
E 5 HOH X 16 316 25 HOH HOH . 
E 5 HOH X 17 317 30 HOH HOH . 
E 5 HOH X 18 318 24 HOH HOH . 
E 5 HOH X 19 319 17 HOH HOH . 
E 5 HOH X 20 320 14 HOH HOH . 
E 5 HOH X 21 321 8 HOH HOH . 
E 5 HOH X 22 322 4 HOH HOH . 
E 5 HOH X 23 323 29 HOH HOH . 
E 5 HOH X 24 324 1 HOH HOH . 
E 5 HOH X 25 325 15 HOH HOH . 
E 5 HOH X 26 326 10 HOH HOH . 
E 5 HOH X 27 327 5 HOH HOH . 
E 5 HOH X 28 328 34 HOH HOH . 
E 5 HOH X 29 329 35 HOH HOH . 
E 5 HOH X 30 330 20 HOH HOH . 
E 5 HOH X 31 331 11 HOH HOH . 
E 5 HOH X 32 332 13 HOH HOH . 
E 5 HOH X 33 333 31 HOH HOH . 
E 5 HOH X 34 334 33 HOH HOH . 
E 5 HOH X 35 335 12 HOH HOH . 
E 5 HOH X 36 336 28 HOH HOH . 
E 5 HOH X 37 337 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3' XNP . . . D 4 -24.765 -20.946 48.831 1 30.24 ? O3' XNP 203 X 1 
HETATM 2 C C3' XNP . . . D 4 -25.286 -20.729 47.531 1 31.98 ? C3' XNP 203 X 1 
HETATM 3 C C2' XNP . . . D 4 -25.596 -19.324 47.39 1 35.38 ? C2' XNP 203 X 1 
HETATM 4 O O2' XNP . . . D 4 -26.877 -18.829 47.728 1 30.05 ? O2' XNP 203 X 1 
HETATM 5 C CAA XNP . . . D 4 -26.403 -17.461 47.319 1 29.85 ? CAA XNP 203 X 1 
HETATM 6 C CAB XNP . . . D 4 -27.365 -16.319 47.111 1 33.38 ? CAB XNP 203 X 1 
HETATM 7 C CAC XNP . . . D 4 -26.517 -15.165 46.594 1 26.57 ? CAC XNP 203 X 1 
HETATM 8 C CAD XNP . . . D 4 -25.922 -15.535 45.371 1 26.9 ? CAD XNP 203 X 1 
HETATM 9 C CBT XNP . . . D 4 -25.672 -14.615 44.362 1 29.29 ? CBT XNP 203 X 1 
HETATM 10 O OBV XNP . . . D 4 -25.163 -15.006 43.308 1 26.58 ? OBV XNP 203 X 1 
HETATM 11 N NBU XNP . . . D 4 -26.049 -13.343 44.605 1 29.21 ? NBU XNP 203 X 1 
HETATM 12 C CAE XNP . . . D 4 -25.621 -16.857 45.081 1 25.8 ? CAE XNP 203 X 1 
HETATM 13 N NAF XNP . . . D 4 -25.636 -17.725 46.081 1 33 ? NAF XNP 203 X 1 
HETATM 14 C C1' XNP . . . D 4 -25.59 -19.167 45.911 1 30.81 ? C1' XNP 203 X 1 
HETATM 15 O O4' XNP . . . D 4 -24.187 -19.461 45.797 1 23.57 ? O4' XNP 203 X 1 
HETATM 16 C C4' XNP . . . D 4 -24.124 -20.713 46.505 1 33.3 ? C4' XNP 203 X 1 
HETATM 17 C C5' XNP . . . D 4 -22.718 -20.743 47.056 1 29.5 ? C5' XNP 203 X 1 
HETATM 18 O O5' XNP . . . D 4 -22.133 -21.81 46.292 1 27.4 ? O5' XNP 203 X 1 
HETATM 19 P PAN XNP . . . D 4 -21.864 -21.679 44.679 1 25.16 ? PAN XNP 203 X 1 
HETATM 20 O OBP XNP . . . D 4 -21.117 -23.068 44.313 1 26.71 ? OBP XNP 203 X 1 
HETATM 21 O OBO XNP . . . D 4 -21.045 -20.484 44.44 1 27.22 ? OBO XNP 203 X 1 
HETATM 22 O OAO XNP . . . D 4 -23.164 -21.578 43.828 1 27.06 ? OAO XNP 203 X 1 
HETATM 23 P PAP XNP . . . D 4 -23.348 -21.866 42.221 1 27.68 ? PAP XNP 203 X 1 
HETATM 24 O OBQ XNP . . . D 4 -22.042 -21.408 41.473 1 25.99 ? OBQ XNP 203 X 1 
HETATM 25 O OBR XNP . . . D 4 -24.56 -21.141 41.735 1 28.89 ? OBR XNP 203 X 1 
HETATM 26 O OAQ XNP . . . D 4 -23.633 -23.451 42.081 1 35.97 ? OAQ XNP 203 X 1 
HETATM 27 C CAR XNP . . . D 4 -22.625 -24.446 41.865 1 28.09 ? CAR XNP 203 X 1 
HETATM 28 C CAS XNP . . . D 4 -23.31 -25.64 41.205 1 30.93 ? CAS XNP 203 X 1 
HETATM 29 O OAW XNP . . . D 4 -23.497 -25.508 39.731 1 35.61 ? OAW XNP 203 X 1 
HETATM 30 C CAT XNP . . . D 4 -22.357 -26.835 41.374 1 28.39 ? CAT XNP 203 X 1 
HETATM 31 O OAZ XNP . . . D 4 -22.567 -27.528 42.595 1 29.9 ? OAZ XNP 203 X 1 
HETATM 32 C CAU XNP . . . D 4 -22.693 -27.594 40.143 1 31.07 ? CAU XNP 203 X 1 
HETATM 33 O OAY XNP . . . D 4 -24.123 -27.939 40.164 1 31.12 ? OAY XNP 203 X 1 
HETATM 34 P PBA XNP . . . D 4 -24.571 -29.458 40.736 1 28.81 ? PBA XNP 203 X 1 
HETATM 35 O OBB XNP . . . D 4 -26.052 -29.677 40.897 1 32.43 ? OBB XNP 203 X 1 
HETATM 36 O OBC XNP . . . D 4 -23.866 -29.644 42.159 1 21.02 ? OBC XNP 203 X 1 
HETATM 37 O OBD XNP . . . D 4 -23.842 -30.522 39.745 1 25.69 ? OBD XNP 203 X 1 
HETATM 38 C CAV XNP . . . D 4 -22.383 -26.253 39.419 1 35.54 ? CAV XNP 203 X 1 
HETATM 39 N NAX XNP . . . D 4 -21.468 -26.354 38.289 1 39.09 ? NAX XNP 203 X 1 
HETATM 40 C CBE XNP . . . D 4 -20.517 -25.413 38.329 1 33.56 ? CBE XNP 203 X 1 
HETATM 41 N NBF XNP . . . D 4 -19.685 -25.644 37.329 1 37.44 ? NBF XNP 203 X 1 
HETATM 42 C CBG XNP . . . D 4 -20.085 -26.746 36.702 1 41.43 ? CBG XNP 203 X 1 
HETATM 43 C CBH XNP . . . D 4 -21.192 -27.199 37.321 1 35.49 ? CBH XNP 203 X 1 
HETATM 44 N NBL XNP . . . D 4 -21.83 -28.287 36.897 1 35.69 ? NBL XNP 203 X 1 
HETATM 45 C CBK XNP . . . D 4 -21.318 -28.964 35.775 1 35.31 ? CBK XNP 203 X 1 
HETATM 46 N NBJ XNP . . . D 4 -20.154 -28.476 35.151 1 38.44 ? NBJ XNP 203 X 1 
HETATM 47 C CBI XNP . . . D 4 -19.573 -27.374 35.644 1 37.82 ? CBI XNP 203 X 1 
HETATM 48 N NBM XNP . . . D 4 -18.476 -26.847 35.1 1 35.02 ? NBM XNP 203 X 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#