data_6NE7 # _model_server_result.job_id qAsPFXk2VTaRtI4xf2zv3w _model_server_result.datetime_utc '2024-11-25 19:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ne7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 6NE7 # _exptl.entry_id 6NE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.26 _cell.angle_gamma 90 _cell.entry_id 6NE7 _cell.length_a 72.286 _cell.length_b 69.858 _cell.length_c 78.971 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 200 A VAL 899 1_555 A N PTR 201 A PTR 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C PTR 201 A PTR 900 1_555 A N GLU 202 A GLU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6NE7 _atom_sites.fract_transf_matrix[1][1] 0.013834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 1101 3013 FMT FMT . C 2 FMT A 1 1102 3014 FMT FMT . D 3 AMP A 1 1103 1 AMP AMP . E 4 HOH A 1 1201 94 HOH HOH . E 4 HOH A 2 1202 55 HOH HOH . E 4 HOH A 3 1203 43 HOH HOH . E 4 HOH A 4 1204 9 HOH HOH . E 4 HOH A 5 1205 21 HOH HOH . E 4 HOH A 6 1206 67 HOH HOH . E 4 HOH A 7 1207 8 HOH HOH . E 4 HOH A 8 1208 121 HOH HOH . E 4 HOH A 9 1209 117 HOH HOH . E 4 HOH A 10 1210 71 HOH HOH . E 4 HOH A 11 1211 90 HOH HOH . E 4 HOH A 12 1212 12 HOH HOH . E 4 HOH A 13 1213 86 HOH HOH . E 4 HOH A 14 1214 4 HOH HOH . E 4 HOH A 15 1215 54 HOH HOH . E 4 HOH A 16 1216 1 HOH HOH . E 4 HOH A 17 1217 69 HOH HOH . E 4 HOH A 18 1218 32 HOH HOH . E 4 HOH A 19 1219 104 HOH HOH . E 4 HOH A 20 1220 125 HOH HOH . E 4 HOH A 21 1221 72 HOH HOH . E 4 HOH A 22 1222 23 HOH HOH . E 4 HOH A 23 1223 101 HOH HOH . E 4 HOH A 24 1224 29 HOH HOH . E 4 HOH A 25 1225 7 HOH HOH . E 4 HOH A 26 1226 97 HOH HOH . E 4 HOH A 27 1227 61 HOH HOH . E 4 HOH A 28 1228 66 HOH HOH . E 4 HOH A 29 1229 85 HOH HOH . E 4 HOH A 30 1230 27 HOH HOH . E 4 HOH A 31 1231 99 HOH HOH . E 4 HOH A 32 1232 19 HOH HOH . E 4 HOH A 33 1233 60 HOH HOH . E 4 HOH A 34 1234 98 HOH HOH . E 4 HOH A 35 1235 96 HOH HOH . E 4 HOH A 36 1236 103 HOH HOH . E 4 HOH A 37 1237 16 HOH HOH . E 4 HOH A 38 1238 22 HOH HOH . E 4 HOH A 39 1239 44 HOH HOH . E 4 HOH A 40 1240 129 HOH HOH . E 4 HOH A 41 1241 35 HOH HOH . E 4 HOH A 42 1242 53 HOH HOH . E 4 HOH A 43 1243 77 HOH HOH . E 4 HOH A 44 1244 34 HOH HOH . E 4 HOH A 45 1245 64 HOH HOH . E 4 HOH A 46 1246 45 HOH HOH . E 4 HOH A 47 1247 81 HOH HOH . E 4 HOH A 48 1248 73 HOH HOH . E 4 HOH A 49 1249 42 HOH HOH . E 4 HOH A 50 1250 56 HOH HOH . E 4 HOH A 51 1251 11 HOH HOH . E 4 HOH A 52 1252 36 HOH HOH . E 4 HOH A 53 1253 113 HOH HOH . E 4 HOH A 54 1254 10 HOH HOH . E 4 HOH A 55 1255 89 HOH HOH . E 4 HOH A 56 1256 24 HOH HOH . E 4 HOH A 57 1257 59 HOH HOH . E 4 HOH A 58 1258 5 HOH HOH . E 4 HOH A 59 1259 65 HOH HOH . E 4 HOH A 60 1260 88 HOH HOH . E 4 HOH A 61 1261 128 HOH HOH . E 4 HOH A 62 1262 87 HOH HOH . E 4 HOH A 63 1263 2 HOH HOH . E 4 HOH A 64 1264 124 HOH HOH . E 4 HOH A 65 1265 41 HOH HOH . E 4 HOH A 66 1266 80 HOH HOH . E 4 HOH A 67 1267 13 HOH HOH . E 4 HOH A 68 1268 115 HOH HOH . E 4 HOH A 69 1269 107 HOH HOH . E 4 HOH A 70 1270 20 HOH HOH . E 4 HOH A 71 1271 18 HOH HOH . E 4 HOH A 72 1272 120 HOH HOH . E 4 HOH A 73 1273 40 HOH HOH . E 4 HOH A 74 1274 82 HOH HOH . E 4 HOH A 75 1275 46 HOH HOH . E 4 HOH A 76 1276 78 HOH HOH . E 4 HOH A 77 1277 76 HOH HOH . E 4 HOH A 78 1278 92 HOH HOH . E 4 HOH A 79 1279 112 HOH HOH . E 4 HOH A 80 1280 106 HOH HOH . E 4 HOH A 81 1281 37 HOH HOH . E 4 HOH A 82 1282 14 HOH HOH . E 4 HOH A 83 1283 132 HOH HOH . E 4 HOH A 84 1284 3 HOH HOH . E 4 HOH A 85 1285 57 HOH HOH . E 4 HOH A 86 1286 38 HOH HOH . E 4 HOH A 87 1287 28 HOH HOH . E 4 HOH A 88 1288 127 HOH HOH . E 4 HOH A 89 1289 49 HOH HOH . E 4 HOH A 90 1290 126 HOH HOH . E 4 HOH A 91 1291 50 HOH HOH . E 4 HOH A 92 1292 122 HOH HOH . E 4 HOH A 93 1293 70 HOH HOH . E 4 HOH A 94 1294 15 HOH HOH . E 4 HOH A 95 1295 91 HOH HOH . E 4 HOH A 96 1296 74 HOH HOH . E 4 HOH A 97 1297 109 HOH HOH . E 4 HOH A 98 1298 17 HOH HOH . E 4 HOH A 99 1299 95 HOH HOH . E 4 HOH A 100 1300 51 HOH HOH . E 4 HOH A 101 1301 102 HOH HOH . E 4 HOH A 102 1302 33 HOH HOH . E 4 HOH A 103 1303 84 HOH HOH . E 4 HOH A 104 1304 131 HOH HOH . E 4 HOH A 105 1305 47 HOH HOH . E 4 HOH A 106 1306 52 HOH HOH . E 4 HOH A 107 1307 110 HOH HOH . E 4 HOH A 108 1308 100 HOH HOH . E 4 HOH A 109 1309 79 HOH HOH . E 4 HOH A 110 1310 105 HOH HOH . E 4 HOH A 111 1311 83 HOH HOH . E 4 HOH A 112 1312 26 HOH HOH . E 4 HOH A 113 1313 30 HOH HOH . E 4 HOH A 114 1314 108 HOH HOH . E 4 HOH A 115 1315 25 HOH HOH . E 4 HOH A 116 1316 123 HOH HOH . E 4 HOH A 117 1317 119 HOH HOH . E 4 HOH A 118 1318 39 HOH HOH . E 4 HOH A 119 1319 133 HOH HOH . E 4 HOH A 120 1320 31 HOH HOH . E 4 HOH A 121 1321 93 HOH HOH . E 4 HOH A 122 1322 58 HOH HOH . E 4 HOH A 123 1323 118 HOH HOH . E 4 HOH A 124 1324 114 HOH HOH . E 4 HOH A 125 1325 48 HOH HOH . E 4 HOH A 126 1326 6 HOH HOH . E 4 HOH A 127 1327 68 HOH HOH . E 4 HOH A 128 1328 130 HOH HOH . E 4 HOH A 129 1329 62 HOH HOH . E 4 HOH A 130 1330 111 HOH HOH . E 4 HOH A 131 1331 116 HOH HOH . E 4 HOH A 132 1332 75 HOH HOH . E 4 HOH A 133 1333 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 AMP . . . D 3 25.709 9.4 10.243 1 43.82 ? N9 AMP 1103 A 1 HETATM 2 C C8 AMP . . . D 3 25.748 8.092 9.824 1 54.75 ? C8 AMP 1103 A 1 HETATM 3 N N7 AMP . . . D 3 24.68 7.401 10.161 1 55.57 ? N7 AMP 1103 A 1 HETATM 4 C C5 AMP . . . D 3 23.892 8.314 10.851 1 44.71 ? C5 AMP 1103 A 1 HETATM 5 C C6 AMP . . . D 3 22.637 8.197 11.483 1 41.92 ? C6 AMP 1103 A 1 HETATM 6 N N6 AMP . . . D 3 21.922 7.074 11.53 1 35.79 ? N6 AMP 1103 A 1 HETATM 7 N N1 AMP . . . D 3 22.139 9.307 12.082 1 38.29 ? N1 AMP 1103 A 1 HETATM 8 C C2 AMP . . . D 3 22.86 10.431 12.062 1 42.62 ? C2 AMP 1103 A 1 HETATM 9 N N3 AMP . . . D 3 24.05 10.658 11.508 1 47.05 ? N3 AMP 1103 A 1 HETATM 10 C C4 AMP . . . D 3 24.52 9.548 10.911 1 45.32 ? C4 AMP 1103 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #