data_6NEL # _model_server_result.job_id zWvMzDDdGieZWqPnZqMiSA _model_server_result.datetime_utc '2025-01-10 14:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6NEL # _exptl.entry_id 6NEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.291 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-(4-fluorophenyl)-5-hydroxy-6-oxo-1,6-dihydropyridin-3-yl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NEL _cell.length_a 88.25 _cell.length_b 101.27 _cell.length_c 66.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OE1 GLU 117 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OE1 GLU 117 A GLU 80 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc4 A OE2 GLU 117 A GLU 80 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 A OD2 ASP 145 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 A OD1 ASP 145 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 A OE2 GLU 156 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc8 A O ILE 157 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc9 B MN MN . A MN 301 1_555 E O01 KKV . A KKV 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc10 B MN MN . A MN 301 1_555 E O04 KKV . A KKV 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O01 KKV . A KKV 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc12 C MN MN . A MN 302 1_555 G O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc13 C MN MN . A MN 302 1_555 G O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 C MN MN . A MN 302 1_555 G O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc15 D MG MG . A MG 303 1_555 G O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc16 D MG MG . A MG 303 1_555 G O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc17 D MG MG . A MG 303 1_555 G O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc18 D MG MG . A MG 303 1_555 G O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C18 H12 F N O4' _chem_comp.formula_weight 325.291 _chem_comp.id KKV _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-(4-fluorophenyl)-5-hydroxy-6-oxo-1,6-dihydropyridin-3-yl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F21 C20 KKV sing 173 n n C20 C19 KKV doub 174 n y C20 C22 KKV sing 175 n y C19 C18 KKV sing 176 n y O12 C11 KKV doub 177 n n O13 C11 KKV sing 178 n n C11 C10 KKV sing 179 n n C22 C23 KKV doub 180 n y C18 C17 KKV doub 181 n y C10 C09 KKV doub 182 n y C10 C14 KKV sing 183 n y C09 C08 KKV sing 184 n y C14 C15 KKV doub 185 n y C23 C17 KKV sing 186 n y C17 C16 KKV sing 187 n n C08 C07 KKV doub 188 n y C15 C07 KKV sing 189 n y C07 C06 KKV sing 190 n n C16 C06 KKV doub 191 n n C16 N24 KKV sing 192 n n C06 C05 KKV sing 193 n n N24 C02 KKV sing 194 n n C05 C03 KKV doub 195 n n C02 C03 KKV sing 196 n n C02 O01 KKV doub 197 n n C03 O04 KKV sing 198 n n O04 H041 KKV sing 199 n n C05 H051 KKV sing 200 n n C08 H081 KKV sing 201 n n C09 H091 KKV sing 202 n n O13 H1 KKV sing 203 n n C14 H141 KKV sing 204 n n C15 H151 KKV sing 205 n n C18 H181 KKV sing 206 n n C19 H191 KKV sing 207 n n C22 H221 KKV sing 208 n n C23 H231 KKV sing 209 n n N24 H241 KKV sing 210 n n # _atom_sites.entry_id 6NEL _atom_sites.fract_transf_matrix[1][1] 0.011331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 MG A 1 303 1 MG MG . E 4 KKV A 1 304 1 KKV H14 . F 5 SO4 A 1 305 1 SO4 SO4 . G 6 HOH A 1 401 23 HOH HOH . G 6 HOH A 2 402 14 HOH HOH . G 6 HOH A 3 403 33 HOH HOH . G 6 HOH A 4 404 86 HOH HOH . G 6 HOH A 5 405 32 HOH HOH . G 6 HOH A 6 406 88 HOH HOH . G 6 HOH A 7 407 82 HOH HOH . G 6 HOH A 8 408 59 HOH HOH . G 6 HOH A 9 409 79 HOH HOH . G 6 HOH A 10 410 39 HOH HOH . G 6 HOH A 11 411 34 HOH HOH . G 6 HOH A 12 412 47 HOH HOH . G 6 HOH A 13 413 57 HOH HOH . G 6 HOH A 14 414 8 HOH HOH . G 6 HOH A 15 415 12 HOH HOH . G 6 HOH A 16 416 46 HOH HOH . G 6 HOH A 17 417 60 HOH HOH . G 6 HOH A 18 418 66 HOH HOH . G 6 HOH A 19 419 70 HOH HOH . G 6 HOH A 20 420 54 HOH HOH . G 6 HOH A 21 421 53 HOH HOH . G 6 HOH A 22 422 50 HOH HOH . G 6 HOH A 23 423 10 HOH HOH . G 6 HOH A 24 424 7 HOH HOH . G 6 HOH A 25 425 16 HOH HOH . G 6 HOH A 26 426 43 HOH HOH . G 6 HOH A 27 427 5 HOH HOH . G 6 HOH A 28 428 21 HOH HOH . G 6 HOH A 29 429 9 HOH HOH . G 6 HOH A 30 430 11 HOH HOH . G 6 HOH A 31 431 63 HOH HOH . G 6 HOH A 32 432 78 HOH HOH . G 6 HOH A 33 433 22 HOH HOH . G 6 HOH A 34 434 87 HOH HOH . G 6 HOH A 35 435 30 HOH HOH . G 6 HOH A 36 436 75 HOH HOH . G 6 HOH A 37 437 45 HOH HOH . G 6 HOH A 38 438 31 HOH HOH . G 6 HOH A 39 439 19 HOH HOH . G 6 HOH A 40 440 71 HOH HOH . G 6 HOH A 41 441 38 HOH HOH . G 6 HOH A 42 442 83 HOH HOH . G 6 HOH A 43 443 13 HOH HOH . G 6 HOH A 44 444 26 HOH HOH . G 6 HOH A 45 445 52 HOH HOH . G 6 HOH A 46 446 58 HOH HOH . G 6 HOH A 47 447 36 HOH HOH . G 6 HOH A 48 448 24 HOH HOH . G 6 HOH A 49 449 94 HOH HOH . G 6 HOH A 50 450 89 HOH HOH . G 6 HOH A 51 451 20 HOH HOH . G 6 HOH A 52 452 77 HOH HOH . G 6 HOH A 53 453 92 HOH HOH . G 6 HOH A 54 454 69 HOH HOH . G 6 HOH A 55 455 61 HOH HOH . G 6 HOH A 56 456 2 HOH HOH . G 6 HOH A 57 457 3 HOH HOH . G 6 HOH A 58 458 41 HOH HOH . G 6 HOH A 59 459 15 HOH HOH . G 6 HOH A 60 460 17 HOH HOH . G 6 HOH A 61 461 44 HOH HOH . G 6 HOH A 62 462 85 HOH HOH . G 6 HOH A 63 463 76 HOH HOH . G 6 HOH A 64 464 4 HOH HOH . G 6 HOH A 65 465 37 HOH HOH . G 6 HOH A 66 466 18 HOH HOH . G 6 HOH A 67 467 35 HOH HOH . G 6 HOH A 68 468 67 HOH HOH . G 6 HOH A 69 469 74 HOH HOH . G 6 HOH A 70 470 56 HOH HOH . G 6 HOH A 71 471 65 HOH HOH . G 6 HOH A 72 472 64 HOH HOH . G 6 HOH A 73 473 25 HOH HOH . G 6 HOH A 74 474 1 HOH HOH . G 6 HOH A 75 475 90 HOH HOH . G 6 HOH A 76 476 27 HOH HOH . G 6 HOH A 77 477 49 HOH HOH . G 6 HOH A 78 478 51 HOH HOH . G 6 HOH A 79 479 42 HOH HOH . G 6 HOH A 80 480 93 HOH HOH . G 6 HOH A 81 481 40 HOH HOH . G 6 HOH A 82 482 73 HOH HOH . G 6 HOH A 83 483 80 HOH HOH . G 6 HOH A 84 484 62 HOH HOH . G 6 HOH A 85 485 28 HOH HOH . G 6 HOH A 86 486 81 HOH HOH . G 6 HOH A 87 487 29 HOH HOH . G 6 HOH A 88 488 72 HOH HOH . G 6 HOH A 89 489 68 HOH HOH . G 6 HOH A 90 490 6 HOH HOH . G 6 HOH A 91 491 48 HOH HOH . G 6 HOH A 92 492 91 HOH HOH . G 6 HOH A 93 493 84 HOH HOH . G 6 HOH A 94 494 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 KKV . . . E 4 9.028 20.022 -8.438 1 47.07 ? O01 KKV 304 A 1 HETATM 2 C C02 KKV . . . E 4 9.587 20.844 -9.179 1 39.24 ? C02 KKV 304 A 1 HETATM 3 C C03 KKV . . . E 4 9.993 22.188 -8.812 1 35.83 ? C03 KKV 304 A 1 HETATM 4 O O04 KKV . . . E 4 9.707 22.531 -7.543 1 31.72 ? O04 KKV 304 A 1 HETATM 5 C C05 KKV . . . E 4 10.592 22.99 -9.713 1 37.39 ? C05 KKV 304 A 1 HETATM 6 C C06 KKV . . . E 4 10.869 22.57 -11.059 1 38.25 ? C06 KKV 304 A 1 HETATM 7 C C07 KKV . . . E 4 11.549 23.522 -11.965 1 40.51 ? C07 KKV 304 A 1 HETATM 8 C C08 KKV . . . E 4 12.836 23.32 -12.454 1 39.3 ? C08 KKV 304 A 1 HETATM 9 C C09 KKV . . . E 4 13.454 24.275 -13.266 1 40.09 ? C09 KKV 304 A 1 HETATM 10 C C10 KKV . . . E 4 12.828 25.473 -13.614 1 41.2 ? C10 KKV 304 A 1 HETATM 11 C C11 KKV . . . E 4 13.526 26.563 -14.525 1 42.3 ? C11 KKV 304 A 1 HETATM 12 O O12 KKV . . . E 4 12.791 27.391 -15.077 1 43.22 -1 O12 KKV 304 A 1 HETATM 13 O O13 KKV . . . E 4 14.761 26.523 -14.597 1 41.6 ? O13 KKV 304 A 1 HETATM 14 C C14 KKV . . . E 4 11.549 25.672 -13.101 1 42.43 ? C14 KKV 304 A 1 HETATM 15 C C15 KKV . . . E 4 10.922 24.729 -12.289 1 42.33 ? C15 KKV 304 A 1 HETATM 16 C C16 KKV . . . E 4 10.5 21.284 -11.454 1 37.55 ? C16 KKV 304 A 1 HETATM 17 C C17 KKV . . . E 4 10.714 20.681 -12.787 1 36.61 ? C17 KKV 304 A 1 HETATM 18 C C18 KKV . . . E 4 10.307 21.32 -13.973 1 36.96 ? C18 KKV 304 A 1 HETATM 19 C C19 KKV . . . E 4 10.517 20.722 -15.213 1 36.04 ? C19 KKV 304 A 1 HETATM 20 C C20 KKV . . . E 4 11.123 19.471 -15.219 1 35.42 ? C20 KKV 304 A 1 HETATM 21 F F21 KKV . . . E 4 11.329 18.866 -16.418 1 34.21 ? F21 KKV 304 A 1 HETATM 22 C C22 KKV . . . E 4 11.529 18.797 -14.082 1 36.27 ? C22 KKV 304 A 1 HETATM 23 C C23 KKV . . . E 4 11.305 19.426 -12.866 1 36.36 ? C23 KKV 304 A 1 HETATM 24 N N24 KKV . . . E 4 9.877 20.465 -10.497 1 38.01 ? N24 KKV 304 A 1 HETATM 25 H H041 KKV . . . E 4 9.919 21.915 -7.025 1 38.07 ? H041 KKV 304 A 1 HETATM 26 H H051 KKV . . . E 4 10.849 23.848 -9.469 1 44.87 ? H051 KKV 304 A 1 HETATM 27 H H081 KKV . . . E 4 13.279 22.532 -12.238 1 47.16 ? H081 KKV 304 A 1 HETATM 28 H H091 KKV . . . E 4 14.308 24.097 -13.583 1 48.11 ? H091 KKV 304 A 1 HETATM 29 H H141 KKV . . . E 4 11.098 26.458 -13.305 1 50.91 ? H141 KKV 304 A 1 HETATM 30 H H151 KKV . . . E 4 10.069 24.891 -11.958 1 50.79 ? H151 KKV 304 A 1 HETATM 31 H H181 KKV . . . E 4 9.907 22.158 -13.936 1 44.35 ? H181 KKV 304 A 1 HETATM 32 H H191 KKV . . . E 4 10.263 21.128 -16.009 1 43.24 ? H191 KKV 304 A 1 HETATM 33 H H221 KKV . . . E 4 11.931 17.961 -14.136 1 43.53 ? H221 KKV 304 A 1 HETATM 34 H H231 KKV . . . E 4 11.571 18.995 -12.087 1 43.63 ? H231 KKV 304 A 1 HETATM 35 H H241 KKV . . . E 4 9.645 19.665 -10.742 1 45.61 ? H241 KKV 304 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #