data_6NEM # _model_server_result.job_id Qb9Kvg6HTUcllUZGUIM1zg _model_server_result.datetime_utc '2024-10-20 07:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6NEM # _exptl.entry_id 6NEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NEM _cell.length_a 87.505 _cell.length_b 100.996 _cell.length_c 66.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A NE2 HIS 111 A HIS 74 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A NE2 HIS 111 A HIS 74 1_555 D MN MN . A MN 303 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A OE1 GLU 117 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD2 ASP 145 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 A OD1 ASP 145 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 A OE2 GLU 156 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 A O ILE 157 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 B MN MN . A MN 301 1_555 E O01 KKS . A KKS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 B MN MN . A MN 301 1_555 E O30 KKS . A KKS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O01 KKS . A KKS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc12 C MN MN . A MN 302 1_555 G O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 C MN MN . A MN 302 1_555 G O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc14 C MN MN . A MN 302 1_555 G O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc15 D MN MN . A MN 303 1_555 G O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc16 D MN MN . A MN 303 1_555 G O HOH . A HOH 406 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc17 D MN MN . A MN 303 1_555 G O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc18 D MN MN . A MN 303 1_555 G O HOH . A HOH 513 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NEM _atom_sites.fract_transf_matrix[1][1] 0.011428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 2 MN A 1 303 1 MN MN . E 3 KKS A 1 304 1 KKS H47 . F 4 SO4 A 1 305 1 SO4 SO4 . G 5 HOH A 1 401 53 HOH HOH . G 5 HOH A 2 402 21 HOH HOH . G 5 HOH A 3 403 84 HOH HOH . G 5 HOH A 4 404 94 HOH HOH . G 5 HOH A 5 405 76 HOH HOH . G 5 HOH A 6 406 119 HOH HOH . G 5 HOH A 7 407 8 HOH HOH . G 5 HOH A 8 408 58 HOH HOH . G 5 HOH A 9 409 3 HOH HOH . G 5 HOH A 10 410 83 HOH HOH . G 5 HOH A 11 411 52 HOH HOH . G 5 HOH A 12 412 25 HOH HOH . G 5 HOH A 13 413 105 HOH HOH . G 5 HOH A 14 414 7 HOH HOH . G 5 HOH A 15 415 34 HOH HOH . G 5 HOH A 16 416 75 HOH HOH . G 5 HOH A 17 417 16 HOH HOH . G 5 HOH A 18 418 89 HOH HOH . G 5 HOH A 19 419 41 HOH HOH . G 5 HOH A 20 420 95 HOH HOH . G 5 HOH A 21 421 107 HOH HOH . G 5 HOH A 22 422 39 HOH HOH . G 5 HOH A 23 423 10 HOH HOH . G 5 HOH A 24 424 12 HOH HOH . G 5 HOH A 25 425 23 HOH HOH . G 5 HOH A 26 426 60 HOH HOH . G 5 HOH A 27 427 42 HOH HOH . G 5 HOH A 28 428 61 HOH HOH . G 5 HOH A 29 429 87 HOH HOH . G 5 HOH A 30 430 14 HOH HOH . G 5 HOH A 31 431 9 HOH HOH . G 5 HOH A 32 432 51 HOH HOH . G 5 HOH A 33 433 68 HOH HOH . G 5 HOH A 34 434 67 HOH HOH . G 5 HOH A 35 435 62 HOH HOH . G 5 HOH A 36 436 45 HOH HOH . G 5 HOH A 37 437 113 HOH HOH . G 5 HOH A 38 438 79 HOH HOH . G 5 HOH A 39 439 100 HOH HOH . G 5 HOH A 40 440 5 HOH HOH . G 5 HOH A 41 441 17 HOH HOH . G 5 HOH A 42 442 44 HOH HOH . G 5 HOH A 43 443 47 HOH HOH . G 5 HOH A 44 444 29 HOH HOH . G 5 HOH A 45 445 38 HOH HOH . G 5 HOH A 46 446 35 HOH HOH . G 5 HOH A 47 447 65 HOH HOH . G 5 HOH A 48 448 11 HOH HOH . G 5 HOH A 49 449 19 HOH HOH . G 5 HOH A 50 450 55 HOH HOH . G 5 HOH A 51 451 30 HOH HOH . G 5 HOH A 52 452 1 HOH HOH . G 5 HOH A 53 453 48 HOH HOH . G 5 HOH A 54 454 24 HOH HOH . G 5 HOH A 55 455 50 HOH HOH . G 5 HOH A 56 456 81 HOH HOH . G 5 HOH A 57 457 63 HOH HOH . G 5 HOH A 58 458 26 HOH HOH . G 5 HOH A 59 459 13 HOH HOH . G 5 HOH A 60 460 85 HOH HOH . G 5 HOH A 61 461 33 HOH HOH . G 5 HOH A 62 462 4 HOH HOH . G 5 HOH A 63 463 103 HOH HOH . G 5 HOH A 64 464 40 HOH HOH . G 5 HOH A 65 465 18 HOH HOH . G 5 HOH A 66 466 32 HOH HOH . G 5 HOH A 67 467 37 HOH HOH . G 5 HOH A 68 468 2 HOH HOH . G 5 HOH A 69 469 116 HOH HOH . G 5 HOH A 70 470 36 HOH HOH . G 5 HOH A 71 471 54 HOH HOH . G 5 HOH A 72 472 20 HOH HOH . G 5 HOH A 73 473 106 HOH HOH . G 5 HOH A 74 474 28 HOH HOH . G 5 HOH A 75 475 77 HOH HOH . G 5 HOH A 76 476 112 HOH HOH . G 5 HOH A 77 477 46 HOH HOH . G 5 HOH A 78 478 111 HOH HOH . G 5 HOH A 79 479 15 HOH HOH . G 5 HOH A 80 480 78 HOH HOH . G 5 HOH A 81 481 49 HOH HOH . G 5 HOH A 82 482 115 HOH HOH . G 5 HOH A 83 483 82 HOH HOH . G 5 HOH A 84 484 101 HOH HOH . G 5 HOH A 85 485 73 HOH HOH . G 5 HOH A 86 486 86 HOH HOH . G 5 HOH A 87 487 56 HOH HOH . G 5 HOH A 88 488 70 HOH HOH . G 5 HOH A 89 489 69 HOH HOH . G 5 HOH A 90 490 71 HOH HOH . G 5 HOH A 91 491 43 HOH HOH . G 5 HOH A 92 492 59 HOH HOH . G 5 HOH A 93 493 31 HOH HOH . G 5 HOH A 94 494 80 HOH HOH . G 5 HOH A 95 495 109 HOH HOH . G 5 HOH A 96 496 92 HOH HOH . G 5 HOH A 97 497 72 HOH HOH . G 5 HOH A 98 498 110 HOH HOH . G 5 HOH A 99 499 93 HOH HOH . G 5 HOH A 100 500 98 HOH HOH . G 5 HOH A 101 501 117 HOH HOH . G 5 HOH A 102 502 88 HOH HOH . G 5 HOH A 103 503 104 HOH HOH . G 5 HOH A 104 504 90 HOH HOH . G 5 HOH A 105 505 114 HOH HOH . G 5 HOH A 106 506 64 HOH HOH . G 5 HOH A 107 507 74 HOH HOH . G 5 HOH A 108 508 108 HOH HOH . G 5 HOH A 109 509 97 HOH HOH . G 5 HOH A 110 510 57 HOH HOH . G 5 HOH A 111 511 6 HOH HOH . G 5 HOH A 112 512 66 HOH HOH . G 5 HOH A 113 513 120 HOH HOH . G 5 HOH A 114 514 99 HOH HOH . G 5 HOH A 115 515 118 HOH HOH . G 5 HOH A 116 516 27 HOH HOH . G 5 HOH A 117 517 102 HOH HOH . G 5 HOH A 118 518 22 HOH HOH . G 5 HOH A 119 519 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.327 _atom_site.Cartn_y 20.206 _atom_site.Cartn_z -7.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #