data_6NEX
#
_model_server_result.job_id            cw3zGUW1tokLpp9JEQMulw 
_model_server_result.datetime_utc      '2024-11-13 00:31:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nex 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":304}' 
#
_entry.id    6NEX 
#
_exptl.entry_id    6NEX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.258 
_cell.angle_gamma         90 
_cell.entry_id            6NEX 
_cell.length_a            110.787 
_cell.length_b            128.435 
_cell.length_c            91.196 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NEX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,M,N 1 1 
C,D,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 140 H CYS 140 1_555 B SG CYS 196 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 137 A CYS 137 1_555 C SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 140 B CYS 140 1_555 D SG CYS 196 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A C PCA 1 L PCA 1 1_555 A N ALA 2 L ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C GLN 39 L GLN 39 1_555 A N MLY 40 L MLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C MLY 40 L MLY 40 1_555 A N MLY 41 L MLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MLY 41 L MLY 41 1_555 A N PRO 42 L PRO 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 A C THR 104 L THR 104 1_555 A N MLY 105 L MLY 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MLY 105 L MLY 105 1_555 A N VAL 106 L VAL 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C SER 168 L SER 168 1_555 A N MLY 169 L MLY 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MLY 169 L MLY 169 1_555 A N GLN 170 L GLN 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C ASN 173 L ASN 173 1_555 A N MLY 174 L MLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MLY 174 L MLY 174 1_555 A N TYR 175 L TYR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 A C GLU 206 L GLU 206 1_555 A N MLY 207 L MLY 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C MLY 207 L MLY 207 1_555 A N THR 208 L THR 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 B C GLU 57 H GLU 57 1_555 B N MLY 58 H MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 B C MLY 58 H MLY 58 1_555 B N TYR 59 H TYR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C ALA 97 H ALA 97 1_555 B N MLY 98 H MLY 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 B C MLY 98 H MLY 98 1_555 B N GLU 99 H GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale17 B C HIS 200 H HIS 200 1_555 B N MLY 201 H MLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 B C MLY 201 H MLY 201 1_555 B N PRO 202 H PRO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale19 B C ASP 208 H ASP 208 1_555 B N MLY 209 H MLY 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale20 B C MLY 209 H MLY 209 1_555 B N ARG 210 H ARG 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale21 C C PCA 1 A PCA 1 1_555 C N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale22 C C GLN 39 A GLN 39 1_555 C N MLY 40 A MLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale23 C C MLY 40 A MLY 40 1_555 C N MLY 41 A MLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale24 C C MLY 41 A MLY 41 1_555 C N PRO 42 A PRO 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale25 C C GLY 71 A GLY 71 1_555 C N MLY 72 A MLY 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale26 C C MLY 72 A MLY 72 1_555 C N ALA 73 A ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale27 C C ASN 173 A ASN 173 1_555 C N MLY 174 A MLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale28 C C MLY 174 A MLY 174 1_555 C N TYR 175 A TYR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale29 C C GLU 206 A GLU 206 1_555 C N MLY 207 A MLY 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale30 C C MLY 207 A MLY 207 1_555 C N THR 208 A THR 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 D C GLU 57 B GLU 57 1_555 D N MLY 58 B MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale32 D C MLY 58 B MLY 58 1_555 D N TYR 59 B TYR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale33 D C ALA 97 B ALA 97 1_555 D N MLY 98 B MLY 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale34 D C MLY 98 B MLY 98 1_555 D N GLU 99 B GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 89 n n 
C O2 FMT sing 90 n n 
C H FMT sing 91 n n 
O2 HO2 FMT sing 92 n n 
#
_atom_sites.entry_id                     6NEX 
_atom_sites.fract_transf_matrix[1][1]    0.009026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006381 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 CL L 1 301 1 CL CL . 
F 5 CL L 1 302 2 CL CL . 
G 6 FMT L 1 303 1 FMT FMT . 
H 6 FMT L 1 304 3 FMT FMT . 
I 6 FMT L 1 305 5 FMT FMT . 
J 7 ACT H 1 301 1 ACT ACT . 
K 5 CL A 1 301 3 CL CL . 
L 6 FMT A 1 302 4 FMT FMT . 
M 8 HOH L 1 401 4 HOH HOH . 
M 8 HOH L 2 402 54 HOH HOH . 
M 8 HOH L 3 403 49 HOH HOH . 
M 8 HOH L 4 404 100 HOH HOH . 
M 8 HOH L 5 405 38 HOH HOH . 
M 8 HOH L 6 406 91 HOH HOH . 
M 8 HOH L 7 407 2 HOH HOH . 
M 8 HOH L 8 408 98 HOH HOH . 
M 8 HOH L 9 409 96 HOH HOH . 
M 8 HOH L 10 410 78 HOH HOH . 
M 8 HOH L 11 411 58 HOH HOH . 
M 8 HOH L 12 412 14 HOH HOH . 
M 8 HOH L 13 413 69 HOH HOH . 
M 8 HOH L 14 414 3 HOH HOH . 
M 8 HOH L 15 415 53 HOH HOH . 
M 8 HOH L 16 416 106 HOH HOH . 
M 8 HOH L 17 417 68 HOH HOH . 
M 8 HOH L 18 418 1 HOH HOH . 
M 8 HOH L 19 419 8 HOH HOH . 
M 8 HOH L 20 420 67 HOH HOH . 
M 8 HOH L 21 421 50 HOH HOH . 
M 8 HOH L 22 422 37 HOH HOH . 
M 8 HOH L 23 423 79 HOH HOH . 
M 8 HOH L 24 424 36 HOH HOH . 
M 8 HOH L 25 425 11 HOH HOH . 
M 8 HOH L 26 426 20 HOH HOH . 
M 8 HOH L 27 427 13 HOH HOH . 
M 8 HOH L 28 428 77 HOH HOH . 
M 8 HOH L 29 429 17 HOH HOH . 
M 8 HOH L 30 430 5 HOH HOH . 
M 8 HOH L 31 431 39 HOH HOH . 
M 8 HOH L 32 432 51 HOH HOH . 
M 8 HOH L 33 433 82 HOH HOH . 
M 8 HOH L 34 434 61 HOH HOH . 
M 8 HOH L 35 435 52 HOH HOH . 
M 8 HOH L 36 436 103 HOH HOH . 
M 8 HOH L 37 437 42 HOH HOH . 
M 8 HOH L 38 438 88 HOH HOH . 
M 8 HOH L 39 439 34 HOH HOH . 
M 8 HOH L 40 440 89 HOH HOH . 
N 8 HOH H 1 401 109 HOH HOH . 
N 8 HOH H 2 402 104 HOH HOH . 
N 8 HOH H 3 403 57 HOH HOH . 
N 8 HOH H 4 404 64 HOH HOH . 
N 8 HOH H 5 405 46 HOH HOH . 
N 8 HOH H 6 406 24 HOH HOH . 
N 8 HOH H 7 407 33 HOH HOH . 
N 8 HOH H 8 408 41 HOH HOH . 
N 8 HOH H 9 409 16 HOH HOH . 
N 8 HOH H 10 410 47 HOH HOH . 
N 8 HOH H 11 411 101 HOH HOH . 
N 8 HOH H 12 412 55 HOH HOH . 
N 8 HOH H 13 413 86 HOH HOH . 
N 8 HOH H 14 414 22 HOH HOH . 
N 8 HOH H 15 415 48 HOH HOH . 
N 8 HOH H 16 416 72 HOH HOH . 
N 8 HOH H 17 417 92 HOH HOH . 
N 8 HOH H 18 418 73 HOH HOH . 
N 8 HOH H 19 419 83 HOH HOH . 
N 8 HOH H 20 420 95 HOH HOH . 
N 8 HOH H 21 421 80 HOH HOH . 
N 8 HOH H 22 422 111 HOH HOH . 
N 8 HOH H 23 423 90 HOH HOH . 
N 8 HOH H 24 424 110 HOH HOH . 
O 8 HOH A 1 401 70 HOH HOH . 
O 8 HOH A 2 402 45 HOH HOH . 
O 8 HOH A 3 403 18 HOH HOH . 
O 8 HOH A 4 404 65 HOH HOH . 
O 8 HOH A 5 405 27 HOH HOH . 
O 8 HOH A 6 406 29 HOH HOH . 
O 8 HOH A 7 407 26 HOH HOH . 
O 8 HOH A 8 408 40 HOH HOH . 
O 8 HOH A 9 409 59 HOH HOH . 
O 8 HOH A 10 410 19 HOH HOH . 
O 8 HOH A 11 411 6 HOH HOH . 
O 8 HOH A 12 412 60 HOH HOH . 
O 8 HOH A 13 413 21 HOH HOH . 
O 8 HOH A 14 414 62 HOH HOH . 
O 8 HOH A 15 415 75 HOH HOH . 
O 8 HOH A 16 416 9 HOH HOH . 
O 8 HOH A 17 417 94 HOH HOH . 
O 8 HOH A 18 418 97 HOH HOH . 
O 8 HOH A 19 419 25 HOH HOH . 
O 8 HOH A 20 420 31 HOH HOH . 
O 8 HOH A 21 421 10 HOH HOH . 
O 8 HOH A 22 422 102 HOH HOH . 
O 8 HOH A 23 423 74 HOH HOH . 
O 8 HOH A 24 424 15 HOH HOH . 
O 8 HOH A 25 425 7 HOH HOH . 
O 8 HOH A 26 426 35 HOH HOH . 
O 8 HOH A 27 427 105 HOH HOH . 
O 8 HOH A 28 428 30 HOH HOH . 
O 8 HOH A 29 429 32 HOH HOH . 
O 8 HOH A 30 430 56 HOH HOH . 
O 8 HOH A 31 431 84 HOH HOH . 
O 8 HOH A 32 432 43 HOH HOH . 
O 8 HOH A 33 433 76 HOH HOH . 
P 8 HOH B 1 301 71 HOH HOH . 
P 8 HOH B 2 302 66 HOH HOH . 
P 8 HOH B 3 303 81 HOH HOH . 
P 8 HOH B 4 304 85 HOH HOH . 
P 8 HOH B 5 305 28 HOH HOH . 
P 8 HOH B 6 306 93 HOH HOH . 
P 8 HOH B 7 307 99 HOH HOH . 
P 8 HOH B 8 308 12 HOH HOH . 
P 8 HOH B 9 309 87 HOH HOH . 
P 8 HOH B 10 310 23 HOH HOH . 
P 8 HOH B 11 311 108 HOH HOH . 
P 8 HOH B 12 312 44 HOH HOH . 
P 8 HOH B 13 313 107 HOH HOH . 
P 8 HOH B 14 314 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . H 6 70.611 -126.76 104.766 1 61.06 ? C FMT 304 L 1 
HETATM 2 O O1 FMT . . . H 6 69.747 -127.446 105.311 1 56.5 ? O1 FMT 304 L 1 
HETATM 3 O O2 FMT . . . H 6 71.155 -125.786 105.291 1 55.73 ? O2 FMT 304 L 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           3 
#