data_6NFH # _model_server_result.job_id h00BgWbPptMccmx-TToDLA _model_server_result.datetime_utc '2024-12-27 01:33:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 6NFH # _exptl.entry_id 6NFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NFH _cell.length_a 72.123 _cell.length_b 104.367 _cell.length_c 38.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6NFH _atom_sites.fract_transf_matrix[1][1] 0.013865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KLM A 1 701 1 KLM INX . C 3 EDO A 1 702 1 EDO EDO . D 3 EDO A 1 703 2 EDO EDO . E 3 EDO A 1 704 3 EDO EDO . F 3 EDO A 1 705 4 EDO EDO . G 3 EDO A 1 706 5 EDO EDO . H 3 EDO A 1 707 6 EDO EDO . I 4 HOH A 1 801 186 HOH HOH . I 4 HOH A 2 802 3 HOH HOH . I 4 HOH A 3 803 265 HOH HOH . I 4 HOH A 4 804 262 HOH HOH . I 4 HOH A 5 805 209 HOH HOH . I 4 HOH A 6 806 155 HOH HOH . I 4 HOH A 7 807 115 HOH HOH . I 4 HOH A 8 808 111 HOH HOH . I 4 HOH A 9 809 85 HOH HOH . I 4 HOH A 10 810 163 HOH HOH . I 4 HOH A 11 811 227 HOH HOH . I 4 HOH A 12 812 64 HOH HOH . I 4 HOH A 13 813 132 HOH HOH . I 4 HOH A 14 814 147 HOH HOH . I 4 HOH A 15 815 160 HOH HOH . I 4 HOH A 16 816 228 HOH HOH . I 4 HOH A 17 817 82 HOH HOH . I 4 HOH A 18 818 247 HOH HOH . I 4 HOH A 19 819 234 HOH HOH . I 4 HOH A 20 820 151 HOH HOH . I 4 HOH A 21 821 42 HOH HOH . I 4 HOH A 22 822 148 HOH HOH . I 4 HOH A 23 823 51 HOH HOH . I 4 HOH A 24 824 21 HOH HOH . I 4 HOH A 25 825 257 HOH HOH . I 4 HOH A 26 826 152 HOH HOH . I 4 HOH A 27 827 118 HOH HOH . I 4 HOH A 28 828 133 HOH HOH . I 4 HOH A 29 829 39 HOH HOH . I 4 HOH A 30 830 202 HOH HOH . I 4 HOH A 31 831 229 HOH HOH . I 4 HOH A 32 832 113 HOH HOH . I 4 HOH A 33 833 124 HOH HOH . I 4 HOH A 34 834 20 HOH HOH . I 4 HOH A 35 835 130 HOH HOH . I 4 HOH A 36 836 138 HOH HOH . I 4 HOH A 37 837 232 HOH HOH . I 4 HOH A 38 838 47 HOH HOH . I 4 HOH A 39 839 276 HOH HOH . I 4 HOH A 40 840 74 HOH HOH . I 4 HOH A 41 841 34 HOH HOH . I 4 HOH A 42 842 230 HOH HOH . I 4 HOH A 43 843 131 HOH HOH . I 4 HOH A 44 844 62 HOH HOH . I 4 HOH A 45 845 83 HOH HOH . I 4 HOH A 46 846 57 HOH HOH . I 4 HOH A 47 847 80 HOH HOH . I 4 HOH A 48 848 71 HOH HOH . I 4 HOH A 49 849 37 HOH HOH . I 4 HOH A 50 850 23 HOH HOH . I 4 HOH A 51 851 29 HOH HOH . I 4 HOH A 52 852 182 HOH HOH . I 4 HOH A 53 853 112 HOH HOH . I 4 HOH A 54 854 53 HOH HOH . I 4 HOH A 55 855 69 HOH HOH . I 4 HOH A 56 856 58 HOH HOH . I 4 HOH A 57 857 25 HOH HOH . I 4 HOH A 58 858 32 HOH HOH . I 4 HOH A 59 859 193 HOH HOH . I 4 HOH A 60 860 38 HOH HOH . I 4 HOH A 61 861 169 HOH HOH . I 4 HOH A 62 862 73 HOH HOH . I 4 HOH A 63 863 102 HOH HOH . I 4 HOH A 64 864 26 HOH HOH . I 4 HOH A 65 865 136 HOH HOH . I 4 HOH A 66 866 255 HOH HOH . I 4 HOH A 67 867 213 HOH HOH . I 4 HOH A 68 868 143 HOH HOH . I 4 HOH A 69 869 44 HOH HOH . I 4 HOH A 70 870 66 HOH HOH . I 4 HOH A 71 871 218 HOH HOH . I 4 HOH A 72 872 196 HOH HOH . I 4 HOH A 73 873 109 HOH HOH . I 4 HOH A 74 874 104 HOH HOH . I 4 HOH A 75 875 19 HOH HOH . I 4 HOH A 76 876 11 HOH HOH . I 4 HOH A 77 877 237 HOH HOH . I 4 HOH A 78 878 15 HOH HOH . I 4 HOH A 79 879 176 HOH HOH . I 4 HOH A 80 880 253 HOH HOH . I 4 HOH A 81 881 221 HOH HOH . I 4 HOH A 82 882 128 HOH HOH . I 4 HOH A 83 883 27 HOH HOH . I 4 HOH A 84 884 22 HOH HOH . I 4 HOH A 85 885 96 HOH HOH . I 4 HOH A 86 886 8 HOH HOH . I 4 HOH A 87 887 114 HOH HOH . I 4 HOH A 88 888 56 HOH HOH . I 4 HOH A 89 889 79 HOH HOH . I 4 HOH A 90 890 17 HOH HOH . I 4 HOH A 91 891 59 HOH HOH . I 4 HOH A 92 892 78 HOH HOH . I 4 HOH A 93 893 1 HOH HOH . I 4 HOH A 94 894 194 HOH HOH . I 4 HOH A 95 895 110 HOH HOH . I 4 HOH A 96 896 173 HOH HOH . I 4 HOH A 97 897 122 HOH HOH . I 4 HOH A 98 898 121 HOH HOH . I 4 HOH A 99 899 46 HOH HOH . I 4 HOH A 100 900 142 HOH HOH . I 4 HOH A 101 901 48 HOH HOH . I 4 HOH A 102 902 5 HOH HOH . I 4 HOH A 103 903 16 HOH HOH . I 4 HOH A 104 904 141 HOH HOH . I 4 HOH A 105 905 6 HOH HOH . I 4 HOH A 106 906 68 HOH HOH . I 4 HOH A 107 907 140 HOH HOH . I 4 HOH A 108 908 63 HOH HOH . I 4 HOH A 109 909 250 HOH HOH . I 4 HOH A 110 910 72 HOH HOH . I 4 HOH A 111 911 33 HOH HOH . I 4 HOH A 112 912 31 HOH HOH . I 4 HOH A 113 913 215 HOH HOH . I 4 HOH A 114 914 52 HOH HOH . I 4 HOH A 115 915 9 HOH HOH . I 4 HOH A 116 916 105 HOH HOH . I 4 HOH A 117 917 24 HOH HOH . I 4 HOH A 118 918 99 HOH HOH . I 4 HOH A 119 919 244 HOH HOH . I 4 HOH A 120 920 243 HOH HOH . I 4 HOH A 121 921 220 HOH HOH . I 4 HOH A 122 922 76 HOH HOH . I 4 HOH A 123 923 7 HOH HOH . I 4 HOH A 124 924 208 HOH HOH . I 4 HOH A 125 925 191 HOH HOH . I 4 HOH A 126 926 192 HOH HOH . I 4 HOH A 127 927 273 HOH HOH . I 4 HOH A 128 928 86 HOH HOH . I 4 HOH A 129 929 127 HOH HOH . I 4 HOH A 130 930 134 HOH HOH . I 4 HOH A 131 931 30 HOH HOH . I 4 HOH A 132 932 157 HOH HOH . I 4 HOH A 133 933 263 HOH HOH . I 4 HOH A 134 934 14 HOH HOH . I 4 HOH A 135 935 10 HOH HOH . I 4 HOH A 136 936 40 HOH HOH . I 4 HOH A 137 937 84 HOH HOH . I 4 HOH A 138 938 4 HOH HOH . I 4 HOH A 139 939 137 HOH HOH . I 4 HOH A 140 940 153 HOH HOH . I 4 HOH A 141 941 35 HOH HOH . I 4 HOH A 142 942 43 HOH HOH . I 4 HOH A 143 943 199 HOH HOH . I 4 HOH A 144 944 45 HOH HOH . I 4 HOH A 145 945 81 HOH HOH . I 4 HOH A 146 946 18 HOH HOH . I 4 HOH A 147 947 2 HOH HOH . I 4 HOH A 148 948 61 HOH HOH . I 4 HOH A 149 949 203 HOH HOH . I 4 HOH A 150 950 212 HOH HOH . I 4 HOH A 151 951 106 HOH HOH . I 4 HOH A 152 952 211 HOH HOH . I 4 HOH A 153 953 174 HOH HOH . I 4 HOH A 154 954 93 HOH HOH . I 4 HOH A 155 955 219 HOH HOH . I 4 HOH A 156 956 13 HOH HOH . I 4 HOH A 157 957 98 HOH HOH . I 4 HOH A 158 958 123 HOH HOH . I 4 HOH A 159 959 55 HOH HOH . I 4 HOH A 160 960 188 HOH HOH . I 4 HOH A 161 961 77 HOH HOH . I 4 HOH A 162 962 95 HOH HOH . I 4 HOH A 163 963 201 HOH HOH . I 4 HOH A 164 964 89 HOH HOH . I 4 HOH A 165 965 225 HOH HOH . I 4 HOH A 166 966 206 HOH HOH . I 4 HOH A 167 967 135 HOH HOH . I 4 HOH A 168 968 223 HOH HOH . I 4 HOH A 169 969 235 HOH HOH . I 4 HOH A 170 970 183 HOH HOH . I 4 HOH A 171 971 108 HOH HOH . I 4 HOH A 172 972 261 HOH HOH . I 4 HOH A 173 973 129 HOH HOH . I 4 HOH A 174 974 178 HOH HOH . I 4 HOH A 175 975 200 HOH HOH . I 4 HOH A 176 976 70 HOH HOH . I 4 HOH A 177 977 258 HOH HOH . I 4 HOH A 178 978 190 HOH HOH . I 4 HOH A 179 979 184 HOH HOH . I 4 HOH A 180 980 239 HOH HOH . I 4 HOH A 181 981 259 HOH HOH . I 4 HOH A 182 982 224 HOH HOH . I 4 HOH A 183 983 92 HOH HOH . I 4 HOH A 184 984 197 HOH HOH . I 4 HOH A 185 985 165 HOH HOH . I 4 HOH A 186 986 172 HOH HOH . I 4 HOH A 187 987 145 HOH HOH . I 4 HOH A 188 988 260 HOH HOH . I 4 HOH A 189 989 49 HOH HOH . I 4 HOH A 190 990 65 HOH HOH . I 4 HOH A 191 991 204 HOH HOH . I 4 HOH A 192 992 187 HOH HOH . I 4 HOH A 193 993 67 HOH HOH . I 4 HOH A 194 994 126 HOH HOH . I 4 HOH A 195 995 97 HOH HOH . I 4 HOH A 196 996 88 HOH HOH . I 4 HOH A 197 997 144 HOH HOH . I 4 HOH A 198 998 179 HOH HOH . I 4 HOH A 199 999 180 HOH HOH . I 4 HOH A 200 1000 164 HOH HOH . I 4 HOH A 201 1001 205 HOH HOH . I 4 HOH A 202 1002 60 HOH HOH . I 4 HOH A 203 1003 54 HOH HOH . I 4 HOH A 204 1004 254 HOH HOH . I 4 HOH A 205 1005 171 HOH HOH . I 4 HOH A 206 1006 75 HOH HOH . I 4 HOH A 207 1007 101 HOH HOH . I 4 HOH A 208 1008 150 HOH HOH . I 4 HOH A 209 1009 41 HOH HOH . I 4 HOH A 210 1010 198 HOH HOH . I 4 HOH A 211 1011 149 HOH HOH . I 4 HOH A 212 1012 214 HOH HOH . I 4 HOH A 213 1013 117 HOH HOH . I 4 HOH A 214 1014 162 HOH HOH . I 4 HOH A 215 1015 264 HOH HOH . I 4 HOH A 216 1016 226 HOH HOH . I 4 HOH A 217 1017 252 HOH HOH . I 4 HOH A 218 1018 189 HOH HOH . I 4 HOH A 219 1019 91 HOH HOH . I 4 HOH A 220 1020 270 HOH HOH . I 4 HOH A 221 1021 275 HOH HOH . I 4 HOH A 222 1022 222 HOH HOH . I 4 HOH A 223 1023 103 HOH HOH . I 4 HOH A 224 1024 175 HOH HOH . I 4 HOH A 225 1025 139 HOH HOH . I 4 HOH A 226 1026 87 HOH HOH . I 4 HOH A 227 1027 236 HOH HOH . I 4 HOH A 228 1028 216 HOH HOH . I 4 HOH A 229 1029 161 HOH HOH . I 4 HOH A 230 1030 233 HOH HOH . I 4 HOH A 231 1031 256 HOH HOH . I 4 HOH A 232 1032 100 HOH HOH . I 4 HOH A 233 1033 251 HOH HOH . I 4 HOH A 234 1034 185 HOH HOH . I 4 HOH A 235 1035 94 HOH HOH . I 4 HOH A 236 1036 107 HOH HOH . I 4 HOH A 237 1037 207 HOH HOH . I 4 HOH A 238 1038 249 HOH HOH . I 4 HOH A 239 1039 245 HOH HOH . I 4 HOH A 240 1040 146 HOH HOH . I 4 HOH A 241 1041 231 HOH HOH . I 4 HOH A 242 1042 240 HOH HOH . I 4 HOH A 243 1043 269 HOH HOH . I 4 HOH A 244 1044 267 HOH HOH . I 4 HOH A 245 1045 12 HOH HOH . I 4 HOH A 246 1046 116 HOH HOH . I 4 HOH A 247 1047 119 HOH HOH . I 4 HOH A 248 1048 170 HOH HOH . I 4 HOH A 249 1049 158 HOH HOH . I 4 HOH A 250 1050 177 HOH HOH . I 4 HOH A 251 1051 28 HOH HOH . I 4 HOH A 252 1052 238 HOH HOH . I 4 HOH A 253 1053 246 HOH HOH . I 4 HOH A 254 1054 125 HOH HOH . I 4 HOH A 255 1055 268 HOH HOH . I 4 HOH A 256 1056 272 HOH HOH . I 4 HOH A 257 1057 195 HOH HOH . I 4 HOH A 258 1058 90 HOH HOH . I 4 HOH A 259 1059 242 HOH HOH . I 4 HOH A 260 1060 271 HOH HOH . I 4 HOH A 261 1061 217 HOH HOH . I 4 HOH A 262 1062 159 HOH HOH . I 4 HOH A 263 1063 50 HOH HOH . I 4 HOH A 264 1064 266 HOH HOH . I 4 HOH A 265 1065 181 HOH HOH . I 4 HOH A 266 1066 241 HOH HOH . I 4 HOH A 267 1067 248 HOH HOH . I 4 HOH A 268 1068 210 HOH HOH . I 4 HOH A 269 1069 167 HOH HOH . I 4 HOH A 270 1070 36 HOH HOH . I 4 HOH A 271 1071 274 HOH HOH . I 4 HOH A 272 1072 156 HOH HOH . I 4 HOH A 273 1073 154 HOH HOH . I 4 HOH A 274 1074 168 HOH HOH . I 4 HOH A 275 1075 166 HOH HOH . I 4 HOH A 276 1076 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 13.851 6.837 8.628 1 27.41 ? C1 EDO 707 A 1 HETATM 2 O O1 EDO . . . H 3 14.253 7.89 7.739 1 26.23 ? O1 EDO 707 A 1 HETATM 3 C C2 EDO . . . H 3 14.99 6.494 9.589 1 27.07 ? C2 EDO 707 A 1 HETATM 4 O O2 EDO . . . H 3 15.733 7.657 9.979 1 40.07 ? O2 EDO 707 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #