data_6NFK
#
_model_server_result.job_id            JEgNW0o4cLlP4NG2qLNJ8Q 
_model_server_result.datetime_utc      '2024-10-19 13:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6NFK 
#
_exptl.entry_id    6NFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NFK 
_cell.length_a            50.6 
_cell.length_b            50.6 
_cell.length_c            149.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             91 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              284 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             96 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              289 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.44 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6NFK 
_atom_sites.fract_transf_matrix[1][1]    0.019763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019763 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 401 EDO EDO . 
C 2 EDO A 1 402 402 EDO EDO . 
D 2 EDO A 1 403 403 EDO EDO . 
E 3 IOD A 1 404 404 IOD IOD . 
F 4 HOH A 1 501 502 HOH HOH . 
F 4 HOH A 2 502 501 HOH HOH . 
F 4 HOH A 3 503 503 HOH HOH . 
F 4 HOH A 4 504 505 HOH HOH . 
F 4 HOH A 5 505 506 HOH HOH . 
F 4 HOH A 6 506 508 HOH HOH . 
F 4 HOH A 7 507 513 HOH HOH . 
F 4 HOH A 8 508 509 HOH HOH . 
F 4 HOH A 9 509 507 HOH HOH . 
F 4 HOH A 10 510 504 HOH HOH . 
F 4 HOH A 11 511 512 HOH HOH . 
F 4 HOH A 12 512 514 HOH HOH . 
F 4 HOH A 13 513 524 HOH HOH . 
F 4 HOH A 14 514 525 HOH HOH . 
F 4 HOH A 15 515 519 HOH HOH . 
F 4 HOH A 16 516 522 HOH HOH . 
F 4 HOH A 17 517 510 HOH HOH . 
F 4 HOH A 18 518 520 HOH HOH . 
F 4 HOH A 19 519 511 HOH HOH . 
F 4 HOH A 20 520 521 HOH HOH . 
F 4 HOH A 21 521 517 HOH HOH . 
F 4 HOH A 22 522 516 HOH HOH . 
F 4 HOH A 23 523 523 HOH HOH . 
F 4 HOH A 24 524 534 HOH HOH . 
F 4 HOH A 25 525 538 HOH HOH . 
F 4 HOH A 26 526 529 HOH HOH . 
F 4 HOH A 27 527 515 HOH HOH . 
F 4 HOH A 28 528 518 HOH HOH . 
F 4 HOH A 29 529 533 HOH HOH . 
F 4 HOH A 30 530 532 HOH HOH . 
F 4 HOH A 31 531 527 HOH HOH . 
F 4 HOH A 32 532 526 HOH HOH . 
F 4 HOH A 33 533 530 HOH HOH . 
F 4 HOH A 34 534 536 HOH HOH . 
F 4 HOH A 35 535 528 HOH HOH . 
F 4 HOH A 36 536 535 HOH HOH . 
F 4 HOH A 37 537 531 HOH HOH . 
F 4 HOH A 38 538 543 HOH HOH . 
F 4 HOH A 39 539 539 HOH HOH . 
F 4 HOH A 40 540 540 HOH HOH . 
F 4 HOH A 41 541 545 HOH HOH . 
F 4 HOH A 42 542 537 HOH HOH . 
F 4 HOH A 43 543 542 HOH HOH . 
F 4 HOH A 44 544 548 HOH HOH . 
F 4 HOH A 45 545 544 HOH HOH . 
F 4 HOH A 46 546 547 HOH HOH . 
F 4 HOH A 47 547 558 HOH HOH . 
F 4 HOH A 48 548 550 HOH HOH . 
F 4 HOH A 49 549 546 HOH HOH . 
F 4 HOH A 50 550 541 HOH HOH . 
F 4 HOH A 51 551 556 HOH HOH . 
F 4 HOH A 52 552 555 HOH HOH . 
F 4 HOH A 53 553 557 HOH HOH . 
F 4 HOH A 54 554 551 HOH HOH . 
F 4 HOH A 55 555 552 HOH HOH . 
F 4 HOH A 56 556 553 HOH HOH . 
F 4 HOH A 57 557 554 HOH HOH . 
F 4 HOH A 58 558 549 HOH HOH . 
F 4 HOH A 59 559 559 HOH HOH . 
F 4 HOH A 60 560 562 HOH HOH . 
F 4 HOH A 61 561 560 HOH HOH . 
F 4 HOH A 62 562 565 HOH HOH . 
F 4 HOH A 63 563 564 HOH HOH . 
F 4 HOH A 64 564 561 HOH HOH . 
F 4 HOH A 65 565 563 HOH HOH . 
F 4 HOH A 66 566 566 HOH HOH . 
F 4 HOH A 67 567 568 HOH HOH . 
F 4 HOH A 68 568 569 HOH HOH . 
F 4 HOH A 69 569 567 HOH HOH . 
F 4 HOH A 70 570 571 HOH HOH . 
F 4 HOH A 71 571 570 HOH HOH . 
F 4 HOH A 72 572 572 HOH HOH . 
F 4 HOH A 73 573 573 HOH HOH . 
F 4 HOH A 74 574 574 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 11.754 -28.123 -1.671 1 72.38 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . B 2 11.387 -28.842 -2.852 1 72.45 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . B 2 11.353 -28.963 -0.465 1 71.94 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . B 2 10.424 -29.963 -0.916 1 71.78 ? O2 EDO 401 A 1 
HETATM 5 H H11 EDO . . . B 2 12.83 -27.937 -1.661 1 86.86 ? H11 EDO 401 A 1 
HETATM 6 H H12 EDO . . . B 2 11.246 -27.157 -1.645 1 86.86 ? H12 EDO 401 A 1 
HETATM 7 H HO1 EDO . . . B 2 11.663 -28.342 -3.633 1 86.94 ? HO1 EDO 401 A 1 
HETATM 8 H H21 EDO . . . B 2 12.232 -29.435 -0.023 1 86.33 ? H21 EDO 401 A 1 
HETATM 9 H H22 EDO . . . B 2 10.89 -28.334 0.298 1 86.33 ? H22 EDO 401 A 1 
HETATM 10 H HO2 EDO . . . B 2 10.145 -30.506 -0.166 1 86.14 ? HO2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#