data_6NFV
#
_model_server_result.job_id            Li2AL6n39xUWvbdqwMhUGg 
_model_server_result.datetime_utc      '2024-11-27 21:22:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nfv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6NFV 
#
_exptl.entry_id    6NFV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.254 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NONAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NFV 
_cell.length_a            156.158 
_cell.length_b            156.158 
_cell.length_c            76.116 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NFV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 312.316 312.316 0 
3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 312.316 0 0 
4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 312.316 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc1 C O THR 54 C THR 75 1_555 F K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
metalc ? metalc2 C OG1 THR 54 C THR 75 1_555 F K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
metalc ? metalc3 C O THR 54 C THR 75 1_555 F K K . C K 202 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
metalc ? metalc4 C OG1 THR 54 C THR 75 1_555 F K K . C K 202 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
metalc ? metalc5 C O CYS 56 C CYS 77 1_555 G K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc6 C O CYS 56 C CYS 77 1_555 G K K . C K 203 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc7 F K K . C K 202 1_555 L O HOH . C HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc8 F K K . C K 202 1_555 L O HOH . C HOH 312 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc9 G K K . C K 203 1_555 L O HOH . C HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? 
metalc ? metalc10 G K K . C K 203 1_555 L O HOH . C HOH 316 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? 
metalc ? metalc11 H K K . C K 204 1_555 L O HOH . C HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc12 H K K . C K 204 1_555 L O HOH . C HOH 317 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc13 H K K . C K 204 1_555 L O HOH . C HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? 
metalc ? metalc14 H K K . C K 204 1_555 L O HOH . C HOH 318 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? 
#
_chem_comp.formula           'C9 H20 O' 
_chem_comp.formula_weight    144.254 
_chem_comp.id                F09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NONAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 F09 sing 163 n n 
C1 H11 F09 sing 164 n n 
C1 H12 F09 sing 165 n n 
C1 H13 F09 sing 166 n n 
C2 C3 F09 sing 167 n n 
C2 H21 F09 sing 168 n n 
C2 H22 F09 sing 169 n n 
C3 C4 F09 sing 170 n n 
C3 H31 F09 sing 171 n n 
C3 H32 F09 sing 172 n n 
C4 C5 F09 sing 173 n n 
C4 H41 F09 sing 174 n n 
C4 H42 F09 sing 175 n n 
C5 C6 F09 sing 176 n n 
C5 H51 F09 sing 177 n n 
C5 H52 F09 sing 178 n n 
C6 C7 F09 sing 179 n n 
C6 H61 F09 sing 180 n n 
C6 H62 F09 sing 181 n n 
C7 C8 F09 sing 182 n n 
C7 H71 F09 sing 183 n n 
C7 H72 F09 sing 184 n n 
C8 C9 F09 sing 185 n n 
C8 H81 F09 sing 186 n n 
C8 H82 F09 sing 187 n n 
C9 OXT F09 sing 188 n n 
C9 H91 F09 sing 189 n n 
C9 H92 F09 sing 190 n n 
OXT HXT F09 sing 191 n n 
#
_atom_sites.entry_id                     6NFV 
_atom_sites.fract_transf_matrix[1][1]    0.006404 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 F09 A 1 301 301 F09 F09 . 
E 5 1EM C 1 201 201 1EM DGA . 
F 6 K C 1 202 1 K K . 
G 6 K C 1 203 2 K K . 
H 6 K C 1 204 3 K K . 
I 6 K C 1 205 4 K K . 
J 7 HOH A 1 401 46 HOH HOH . 
J 7 HOH A 2 402 60 HOH HOH . 
J 7 HOH A 3 403 62 HOH HOH . 
J 7 HOH A 4 404 17 HOH HOH . 
J 7 HOH A 5 405 16 HOH HOH . 
J 7 HOH A 6 406 23 HOH HOH . 
J 7 HOH A 7 407 39 HOH HOH . 
J 7 HOH A 8 408 1 HOH HOH . 
J 7 HOH A 9 409 48 HOH HOH . 
J 7 HOH A 10 410 53 HOH HOH . 
J 7 HOH A 11 411 45 HOH HOH . 
J 7 HOH A 12 412 55 HOH HOH . 
J 7 HOH A 13 413 29 HOH HOH . 
J 7 HOH A 14 414 38 HOH HOH . 
J 7 HOH A 15 415 67 HOH HOH . 
J 7 HOH A 16 416 63 HOH HOH . 
J 7 HOH A 17 417 37 HOH HOH . 
J 7 HOH A 18 418 94 HOH HOH . 
J 7 HOH A 19 419 90 HOH HOH . 
J 7 HOH A 20 420 33 HOH HOH . 
J 7 HOH A 21 421 19 HOH HOH . 
J 7 HOH A 22 422 44 HOH HOH . 
J 7 HOH A 23 423 34 HOH HOH . 
J 7 HOH A 24 424 50 HOH HOH . 
J 7 HOH A 25 425 86 HOH HOH . 
J 7 HOH A 26 426 28 HOH HOH . 
J 7 HOH A 27 427 54 HOH HOH . 
J 7 HOH A 28 428 61 HOH HOH . 
J 7 HOH A 29 429 66 HOH HOH . 
J 7 HOH A 30 430 65 HOH HOH . 
J 7 HOH A 31 431 81 HOH HOH . 
J 7 HOH A 32 432 41 HOH HOH . 
J 7 HOH A 33 433 80 HOH HOH . 
K 7 HOH B 1 301 77 HOH HOH . 
K 7 HOH B 2 302 22 HOH HOH . 
K 7 HOH B 3 303 76 HOH HOH . 
K 7 HOH B 4 304 85 HOH HOH . 
K 7 HOH B 5 305 10 HOH HOH . 
K 7 HOH B 6 306 12 HOH HOH . 
K 7 HOH B 7 307 68 HOH HOH . 
K 7 HOH B 8 308 70 HOH HOH . 
K 7 HOH B 9 309 59 HOH HOH . 
K 7 HOH B 10 310 4 HOH HOH . 
K 7 HOH B 11 311 11 HOH HOH . 
K 7 HOH B 12 312 64 HOH HOH . 
K 7 HOH B 13 313 25 HOH HOH . 
K 7 HOH B 14 314 84 HOH HOH . 
K 7 HOH B 15 315 92 HOH HOH . 
K 7 HOH B 16 316 58 HOH HOH . 
K 7 HOH B 17 317 43 HOH HOH . 
K 7 HOH B 18 318 47 HOH HOH . 
K 7 HOH B 19 319 30 HOH HOH . 
K 7 HOH B 20 320 35 HOH HOH . 
K 7 HOH B 21 321 96 HOH HOH . 
K 7 HOH B 22 322 42 HOH HOH . 
K 7 HOH B 23 323 8 HOH HOH . 
K 7 HOH B 24 324 69 HOH HOH . 
K 7 HOH B 25 325 14 HOH HOH . 
K 7 HOH B 26 326 7 HOH HOH . 
K 7 HOH B 27 327 6 HOH HOH . 
K 7 HOH B 28 328 20 HOH HOH . 
K 7 HOH B 29 329 13 HOH HOH . 
K 7 HOH B 30 330 73 HOH HOH . 
K 7 HOH B 31 331 51 HOH HOH . 
K 7 HOH B 32 332 95 HOH HOH . 
K 7 HOH B 33 333 40 HOH HOH . 
K 7 HOH B 34 334 27 HOH HOH . 
K 7 HOH B 35 335 98 HOH HOH . 
K 7 HOH B 36 336 26 HOH HOH . 
K 7 HOH B 37 337 93 HOH HOH . 
K 7 HOH B 38 338 75 HOH HOH . 
K 7 HOH B 39 339 87 HOH HOH . 
K 7 HOH B 40 340 18 HOH HOH . 
K 7 HOH B 41 341 24 HOH HOH . 
K 7 HOH B 42 342 101 HOH HOH . 
K 7 HOH B 43 343 57 HOH HOH . 
K 7 HOH B 44 344 100 HOH HOH . 
K 7 HOH B 45 345 49 HOH HOH . 
K 7 HOH B 46 346 72 HOH HOH . 
K 7 HOH B 47 347 71 HOH HOH . 
K 7 HOH B 48 348 78 HOH HOH . 
K 7 HOH B 49 349 82 HOH HOH . 
K 7 HOH B 50 350 74 HOH HOH . 
K 7 HOH B 51 351 88 HOH HOH . 
K 7 HOH B 52 352 91 HOH HOH . 
K 7 HOH B 53 353 97 HOH HOH . 
L 7 HOH C 1 301 21 HOH HOH . 
L 7 HOH C 2 302 99 HOH HOH . 
L 7 HOH C 3 303 3 HOH HOH . 
L 7 HOH C 4 304 5 HOH HOH . 
L 7 HOH C 5 305 31 HOH HOH . 
L 7 HOH C 6 306 2 HOH HOH . 
L 7 HOH C 7 307 32 HOH HOH . 
L 7 HOH C 8 308 15 HOH HOH . 
L 7 HOH C 9 309 9 HOH HOH . 
L 7 HOH C 10 310 36 HOH HOH . 
L 7 HOH C 11 311 89 HOH HOH . 
L 7 HOH C 12 312 102 HOH HOH . 
L 7 HOH C 13 313 56 HOH HOH . 
L 7 HOH C 14 314 52 HOH HOH . 
L 7 HOH C 15 315 79 HOH HOH . 
L 7 HOH C 16 316 83 HOH HOH . 
L 7 HOH C 17 317 104 HOH HOH . 
L 7 HOH C 18 318 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F09 . . . D 4 156.923 133.79 -39.183 1 68.26 ? C1 F09 301 A 1 
HETATM 2 C C2 F09 . . . D 4 157.212 133.848 -37.679 1 76.39 ? C2 F09 301 A 1 
HETATM 3 C C3 F09 . . . D 4 157.057 132.468 -37.021 1 80.1 ? C3 F09 301 A 1 
HETATM 4 C C4 F09 . . . D 4 156.174 132.522 -35.766 1 63.98 ? C4 F09 301 A 1 
HETATM 5 C C5 F09 . . . D 4 156.789 131.678 -34.643 1 69.7 ? C5 F09 301 A 1 
HETATM 6 C C6 F09 . . . D 4 155.748 131.376 -33.561 1 64.28 ? C6 F09 301 A 1 
HETATM 7 C C7 F09 . . . D 4 156.319 131.591 -32.157 1 67.36 ? C7 F09 301 A 1 
HETATM 8 C C8 F09 . . . D 4 156.918 130.322 -31.549 1 70.91 ? C8 F09 301 A 1 
HETATM 9 C C9 F09 . . . D 4 157.499 130.677 -30.175 1 73.73 ? C9 F09 301 A 1 
HETATM 10 O OXT F09 . . . D 4 158.014 129.555 -29.493 1 86.16 ? OXT F09 301 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#