data_6NFV # _model_server_result.job_id 5JoeMrgYmi8S02goHrZSWA _model_server_result.datetime_utc '2024-11-04 23:07:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6NFV # _exptl.entry_id 6NFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NFV _cell.length_a 156.158 _cell.length_b 156.158 _cell.length_c 76.116 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 312.316 312.316 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 312.316 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 312.316 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 C O THR 54 C THR 75 1_555 F K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc2 C OG1 THR 54 C THR 75 1_555 F K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc3 C O CYS 56 C CYS 77 1_555 G K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 F K K . C K 202 1_555 L O HOH . C HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc5 G K K . C K 203 1_555 L O HOH . C HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc6 H K K . C K 204 1_555 L O HOH . C HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc7 H K K . C K 204 1_555 L O HOH . C HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? metalc ? metalc8 C O THR 54 C THR 75 1_555 F K K . C K 202 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc9 C OG1 THR 54 C THR 75 1_555 F K K . C K 202 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc10 C O CYS 56 C CYS 77 1_555 G K K . C K 203 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc11 F K K . C K 202 1_555 L O HOH . C HOH 312 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc12 G K K . C K 203 1_555 L O HOH . C HOH 316 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc13 H K K . C K 204 1_555 L O HOH . C HOH 317 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc14 H K K . C K 204 1_555 L O HOH . C HOH 318 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NFV _atom_sites.fract_transf_matrix[1][1] 0.006404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 301 301 F09 F09 . E 5 1EM C 1 201 201 1EM DGA . F 6 K C 1 202 1 K K . G 6 K C 1 203 2 K K . H 6 K C 1 204 3 K K . I 6 K C 1 205 4 K K . J 7 HOH A 1 401 46 HOH HOH . J 7 HOH A 2 402 60 HOH HOH . J 7 HOH A 3 403 62 HOH HOH . J 7 HOH A 4 404 17 HOH HOH . J 7 HOH A 5 405 16 HOH HOH . J 7 HOH A 6 406 23 HOH HOH . J 7 HOH A 7 407 39 HOH HOH . J 7 HOH A 8 408 1 HOH HOH . J 7 HOH A 9 409 48 HOH HOH . J 7 HOH A 10 410 53 HOH HOH . J 7 HOH A 11 411 45 HOH HOH . J 7 HOH A 12 412 55 HOH HOH . J 7 HOH A 13 413 29 HOH HOH . J 7 HOH A 14 414 38 HOH HOH . J 7 HOH A 15 415 67 HOH HOH . J 7 HOH A 16 416 63 HOH HOH . J 7 HOH A 17 417 37 HOH HOH . J 7 HOH A 18 418 94 HOH HOH . J 7 HOH A 19 419 90 HOH HOH . J 7 HOH A 20 420 33 HOH HOH . J 7 HOH A 21 421 19 HOH HOH . J 7 HOH A 22 422 44 HOH HOH . J 7 HOH A 23 423 34 HOH HOH . J 7 HOH A 24 424 50 HOH HOH . J 7 HOH A 25 425 86 HOH HOH . J 7 HOH A 26 426 28 HOH HOH . J 7 HOH A 27 427 54 HOH HOH . J 7 HOH A 28 428 61 HOH HOH . J 7 HOH A 29 429 66 HOH HOH . J 7 HOH A 30 430 65 HOH HOH . J 7 HOH A 31 431 81 HOH HOH . J 7 HOH A 32 432 41 HOH HOH . J 7 HOH A 33 433 80 HOH HOH . K 7 HOH B 1 301 77 HOH HOH . K 7 HOH B 2 302 22 HOH HOH . K 7 HOH B 3 303 76 HOH HOH . K 7 HOH B 4 304 85 HOH HOH . K 7 HOH B 5 305 10 HOH HOH . K 7 HOH B 6 306 12 HOH HOH . K 7 HOH B 7 307 68 HOH HOH . K 7 HOH B 8 308 70 HOH HOH . K 7 HOH B 9 309 59 HOH HOH . K 7 HOH B 10 310 4 HOH HOH . K 7 HOH B 11 311 11 HOH HOH . K 7 HOH B 12 312 64 HOH HOH . K 7 HOH B 13 313 25 HOH HOH . K 7 HOH B 14 314 84 HOH HOH . K 7 HOH B 15 315 92 HOH HOH . K 7 HOH B 16 316 58 HOH HOH . K 7 HOH B 17 317 43 HOH HOH . K 7 HOH B 18 318 47 HOH HOH . K 7 HOH B 19 319 30 HOH HOH . K 7 HOH B 20 320 35 HOH HOH . K 7 HOH B 21 321 96 HOH HOH . K 7 HOH B 22 322 42 HOH HOH . K 7 HOH B 23 323 8 HOH HOH . K 7 HOH B 24 324 69 HOH HOH . K 7 HOH B 25 325 14 HOH HOH . K 7 HOH B 26 326 7 HOH HOH . K 7 HOH B 27 327 6 HOH HOH . K 7 HOH B 28 328 20 HOH HOH . K 7 HOH B 29 329 13 HOH HOH . K 7 HOH B 30 330 73 HOH HOH . K 7 HOH B 31 331 51 HOH HOH . K 7 HOH B 32 332 95 HOH HOH . K 7 HOH B 33 333 40 HOH HOH . K 7 HOH B 34 334 27 HOH HOH . K 7 HOH B 35 335 98 HOH HOH . K 7 HOH B 36 336 26 HOH HOH . K 7 HOH B 37 337 93 HOH HOH . K 7 HOH B 38 338 75 HOH HOH . K 7 HOH B 39 339 87 HOH HOH . K 7 HOH B 40 340 18 HOH HOH . K 7 HOH B 41 341 24 HOH HOH . K 7 HOH B 42 342 101 HOH HOH . K 7 HOH B 43 343 57 HOH HOH . K 7 HOH B 44 344 100 HOH HOH . K 7 HOH B 45 345 49 HOH HOH . K 7 HOH B 46 346 72 HOH HOH . K 7 HOH B 47 347 71 HOH HOH . K 7 HOH B 48 348 78 HOH HOH . K 7 HOH B 49 349 82 HOH HOH . K 7 HOH B 50 350 74 HOH HOH . K 7 HOH B 51 351 88 HOH HOH . K 7 HOH B 52 352 91 HOH HOH . K 7 HOH B 53 353 97 HOH HOH . L 7 HOH C 1 301 21 HOH HOH . L 7 HOH C 2 302 99 HOH HOH . L 7 HOH C 3 303 3 HOH HOH . L 7 HOH C 4 304 5 HOH HOH . L 7 HOH C 5 305 31 HOH HOH . L 7 HOH C 6 306 2 HOH HOH . L 7 HOH C 7 307 32 HOH HOH . L 7 HOH C 8 308 15 HOH HOH . L 7 HOH C 9 309 9 HOH HOH . L 7 HOH C 10 310 36 HOH HOH . L 7 HOH C 11 311 89 HOH HOH . L 7 HOH C 12 312 102 HOH HOH . L 7 HOH C 13 313 56 HOH HOH . L 7 HOH C 14 314 52 HOH HOH . L 7 HOH C 15 315 79 HOH HOH . L 7 HOH C 16 316 83 HOH HOH . L 7 HOH C 17 317 104 HOH HOH . L 7 HOH C 18 318 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . D 4 156.923 133.79 -39.183 1 68.26 ? C1 F09 301 A 1 HETATM 2 C C2 F09 . . . D 4 157.212 133.848 -37.679 1 76.39 ? C2 F09 301 A 1 HETATM 3 C C3 F09 . . . D 4 157.057 132.468 -37.021 1 80.1 ? C3 F09 301 A 1 HETATM 4 C C4 F09 . . . D 4 156.174 132.522 -35.766 1 63.98 ? C4 F09 301 A 1 HETATM 5 C C5 F09 . . . D 4 156.789 131.678 -34.643 1 69.7 ? C5 F09 301 A 1 HETATM 6 C C6 F09 . . . D 4 155.748 131.376 -33.561 1 64.28 ? C6 F09 301 A 1 HETATM 7 C C7 F09 . . . D 4 156.319 131.591 -32.157 1 67.36 ? C7 F09 301 A 1 HETATM 8 C C8 F09 . . . D 4 156.918 130.322 -31.549 1 70.91 ? C8 F09 301 A 1 HETATM 9 C C9 F09 . . . D 4 157.499 130.677 -30.175 1 73.73 ? C9 F09 301 A 1 HETATM 10 O OXT F09 . . . D 4 158.014 129.555 -29.493 1 86.16 ? OXT F09 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #