data_6NFZ # _model_server_result.job_id K_XJOg72xYEh5NGAzflNiw _model_server_result.datetime_utc '2024-11-27 16:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6NFZ # _exptl.entry_id 6NFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NFZ _cell.length_a 149.932 _cell.length_b 149.932 _cell.length_c 156.754 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 166 A ALA 164 1_555 A N TPO 167 A TPO 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TPO 167 A TPO 165 1_555 A N LEU 168 A LEU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 172 A LEU 170 1_555 A N SEP 173 A SEP 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C SEP 173 A SEP 171 1_555 A N PHE 174 A PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LEU 172 B LEU 170 1_555 B N SEP 173 B SEP 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C SEP 173 B SEP 171 1_555 B N PHE 174 B PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 70 n n C4 H4 B49 sing 71 n n C4 H4A B49 sing 72 n n C4 H4B B49 sing 73 n n C5 C6 B49 doub 74 n y C5 C15 B49 sing 75 n y C5 H5 B49 sing 76 n n C6 C16 B49 sing 77 n y C6 H6 B49 sing 78 n n C7 C15 B49 doub 79 n y C7 C17 B49 sing 80 n y C7 H7 B49 sing 81 n n C13 C3 B49 sing 82 n n C13 C18 B49 doub 83 n y C13 C19 B49 sing 84 n y C15 F29 B49 sing 85 n n C17 C20 B49 sing 86 n n C17 C16 B49 doub 87 n y C20 C21 B49 sing 88 n n C20 C12 B49 doub 89 z n C21 N24 B49 sing 90 n n C21 O27 B49 doub 91 n n C22 C19 B49 sing 92 n n C22 N25 B49 sing 93 n n C22 O28 B49 doub 94 n n C3 H3 B49 sing 95 n n C3 H3A B49 sing 96 n n C3 H3B B49 sing 97 n n C12 C18 B49 sing 98 n n C12 H12 B49 sing 99 n n C14 C19 B49 doub 100 n y C14 N23 B49 sing 101 n y C16 N24 B49 sing 102 n n C18 N23 B49 sing 103 n y N23 HN23 B49 sing 104 n n N24 HN24 B49 sing 105 n n N25 HN25 B49 sing 106 n n N25 C37 B49 sing 107 n n C37 C38 B49 sing 108 n n C38 N4 B49 sing 109 n n N4 C39 B49 sing 110 n n N4 C40 B49 sing 111 n n C40 C41 B49 sing 112 n n C39 C42 B49 sing 113 n n C37 H14 B49 sing 114 n n C37 H15 B49 sing 115 n n C38 H16 B49 sing 116 n n C38 H17 B49 sing 117 n n C39 H18 B49 sing 118 n n C39 H19 B49 sing 119 n n C40 H20 B49 sing 120 n n C40 H21 B49 sing 121 n n C41 H22 B49 sing 122 n n C41 H23 B49 sing 123 n n C41 H24 B49 sing 124 n n C42 H25 B49 sing 125 n n C42 H26 B49 sing 126 n n C42 H27 B49 sing 127 n n # _atom_sites.entry_id 6NFZ _atom_sites.fract_transf_matrix[1][1] 0.00667 _atom_sites.fract_transf_matrix[1][2] 0.003851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B49 A 1 401 9002 B49 B49 . D 2 B49 B 1 9001 9001 B49 B49 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . C 2 184.25 222.412 154.889 1 61.93 ? C4 B49 401 A 1 HETATM 2 C C5 B49 . . . C 2 183.931 231.926 152.209 1 47.1 ? C5 B49 401 A 1 HETATM 3 C C6 B49 . . . C 2 183.98 230.734 151.446 1 48.52 ? C6 B49 401 A 1 HETATM 4 C C7 B49 . . . C 2 184.026 230.613 154.266 1 48.23 ? C7 B49 401 A 1 HETATM 5 C C13 B49 . . . C 2 184.562 225.604 156.859 1 54.46 ? C13 B49 401 A 1 HETATM 6 C C15 B49 . . . C 2 183.954 231.863 153.617 1 46.95 ? C15 B49 401 A 1 HETATM 7 C C17 B49 . . . C 2 184.074 229.413 153.5 1 51.56 ? C17 B49 401 A 1 HETATM 8 C C20 B49 . . . C 2 184.154 227.975 153.907 1 55.49 ? C20 B49 401 A 1 HETATM 9 C C21 B49 . . . C 2 184.175 227.177 152.695 1 58.02 ? C21 B49 401 A 1 HETATM 10 C C22 B49 . . . C 2 184.834 223.235 158 1 54.85 ? C22 B49 401 A 1 HETATM 11 C C3 B49 . . . C 2 184.783 226.465 158.089 1 53.83 ? C3 B49 401 A 1 HETATM 12 C C12 B49 . . . C 2 184.188 227.553 155.183 1 52.57 ? C12 B49 401 A 1 HETATM 13 C C14 B49 . . . C 2 184.33 223.845 155.464 1 57.04 ? C14 B49 401 A 1 HETATM 14 C C16 B49 . . . C 2 184.052 229.475 152.1 1 50.02 ? C16 B49 401 A 1 HETATM 15 C C18 B49 . . . C 2 184.3 226.065 155.569 1 55.01 ? C18 B49 401 A 1 HETATM 16 C C19 B49 . . . C 2 184.586 224.192 156.806 1 54.39 ? C19 B49 401 A 1 HETATM 17 N N23 B49 . . . C 2 184.161 224.976 154.744 1 56.91 ? N23 B49 401 A 1 HETATM 18 N N24 B49 . . . C 2 184.114 228.071 151.573 1 56.12 ? N24 B49 401 A 1 HETATM 19 N N25 B49 . . . C 2 185.168 221.843 157.777 1 54.69 ? N25 B49 401 A 1 HETATM 20 O O27 B49 . . . C 2 184.235 225.966 152.621 1 60.21 ? O27 B49 401 A 1 HETATM 21 O O28 B49 . . . C 2 184.735 223.661 159.135 1 59.36 ? O28 B49 401 A 1 HETATM 22 F F29 B49 . . . C 2 183.908 232.994 154.336 1 49.9 ? F29 B49 401 A 1 HETATM 23 H H4 B49 . . . C 2 183.45 221.959 155.237 1 74.32 ? H4 B49 401 A 1 HETATM 24 H H4A B49 . . . C 2 184.186 222.466 153.907 1 74.32 ? H4A B49 401 A 1 HETATM 25 H H4B B49 . . . C 2 185.057 221.914 155.129 1 74.32 ? H4B B49 401 A 1 HETATM 26 H H5 B49 . . . C 2 183.882 232.803 151.755 1 56.52 ? H5 B49 401 A 1 HETATM 27 H H6 B49 . . . C 2 183.965 230.778 150.465 1 58.22 ? H6 B49 401 A 1 HETATM 28 H H7 B49 . . . C 2 184.041 230.57 155.24 1 57.87 ? H7 B49 401 A 1 HETATM 29 H H3 B49 . . . C 2 184.378 226.028 158.872 1 64.6 ? H3 B49 401 A 1 HETATM 30 H H3A B49 . . . C 2 184.369 227.339 157.952 1 64.6 ? H3A B49 401 A 1 HETATM 31 H H3B B49 . . . C 2 185.751 226.58 158.24 1 64.6 ? H3B B49 401 A 1 HETATM 32 H H12 B49 . . . C 2 184.046 228.206 155.89 1 63.09 ? H12 B49 401 A 1 HETATM 33 C C37 B49 . . . C 2 185.391 220.941 158.903 1 53.08 ? C37 B49 401 A 1 HETATM 34 H HN23 B49 . . . C 2 183.985 225.002 153.848 1 68.29 ? HN23 B49 401 A 1 HETATM 35 C C38 B49 . . . C 2 186.255 221.599 159.997 1 54.28 ? C38 B49 401 A 1 HETATM 36 H HN24 B49 . . . C 2 184.115 227.829 150.698 1 67.35 ? HN24 B49 401 A 1 HETATM 37 N N4 B49 . . . C 2 187.367 220.708 160.366 1 63.18 ? N4 B49 401 A 1 HETATM 38 H HN25 B49 . . . C 2 185.235 221.523 156.93 1 65.62 ? HN25 B49 401 A 1 HETATM 39 C C39 B49 . . . C 2 188.256 220.525 159.224 1 59.03 ? C39 B49 401 A 1 HETATM 40 C C40 B49 . . . C 2 188.106 221.281 161.477 1 54.65 ? C40 B49 401 A 1 HETATM 41 C C41 B49 . . . C 2 187.206 221.462 162.711 1 53.1 ? C41 B49 401 A 1 HETATM 42 C C42 B49 . . . C 2 189.072 219.227 159.373 1 52.81 ? C42 B49 401 A 1 HETATM 43 H H14 B49 . . . C 2 185.838 220.133 158.583 1 63.69 ? H14 B49 401 A 1 HETATM 44 H H15 B49 . . . C 2 184.534 220.699 159.285 1 63.69 ? H15 B49 401 A 1 HETATM 45 H H16 B49 . . . C 2 185.68 221.724 160.782 1 65.14 ? H16 B49 401 A 1 HETATM 46 H H17 B49 . . . C 2 186.6 222.464 159.688 1 65.14 ? H17 B49 401 A 1 HETATM 47 H H18 B49 . . . C 2 187.726 220.477 158.397 1 70.84 ? H18 B49 401 A 1 HETATM 48 H H19 B49 . . . C 2 188.868 221.281 159.165 1 70.84 ? H19 B49 401 A 1 HETATM 49 H H20 B49 . . . C 2 188.838 220.673 161.713 1 65.58 ? H20 B49 401 A 1 HETATM 50 H H21 B49 . . . C 2 188.491 222.149 161.206 1 65.58 ? H21 B49 401 A 1 HETATM 51 H H22 B49 . . . C 2 187.489 222.264 163.211 1 63.72 ? H22 B49 401 A 1 HETATM 52 H H23 B49 . . . C 2 186.287 221.565 162.431 1 63.72 ? H23 B49 401 A 1 HETATM 53 H H24 B49 . . . C 2 187.283 220.676 163.286 1 63.72 ? H24 B49 401 A 1 HETATM 54 H H25 B49 . . . C 2 189.28 218.865 158.477 1 63.38 ? H25 B49 401 A 1 HETATM 55 H H26 B49 . . . C 2 189.914 219.42 159.854 1 63.38 ? H26 B49 401 A 1 HETATM 56 H H27 B49 . . . C 2 188.545 218.562 159.883 1 63.38 ? H27 B49 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 56 #