data_6NFZ
#
_model_server_result.job_id            6QZ2xndJIpZAo7dl8PAL9Q 
_model_server_result.datetime_utc      '2024-11-27 17:07:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nfz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":9001}' 
#
_entry.id    6NFZ 
#
_exptl.entry_id    6NFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.474 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NFZ 
_cell.length_a            149.932 
_cell.length_b            149.932 
_cell.length_c            156.754 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 166 A ALA 164 1_555 A N TPO 167 A TPO 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C TPO 167 A TPO 165 1_555 A N LEU 168 A LEU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C LEU 172 A LEU 170 1_555 A N SEP 173 A SEP 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C SEP 173 A SEP 171 1_555 A N PHE 174 A PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 B C LEU 172 B LEU 170 1_555 B N SEP 173 B SEP 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 B C SEP 173 B SEP 171 1_555 B N PHE 174 B PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C22 H27 F N4 O2' 
_chem_comp.formula_weight    398.474 
_chem_comp.id                B49 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SUNITINIB 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C14 B49 sing 70 n n 
C4 H4 B49 sing 71 n n 
C4 H4A B49 sing 72 n n 
C4 H4B B49 sing 73 n n 
C5 C6 B49 doub 74 n y 
C5 C15 B49 sing 75 n y 
C5 H5 B49 sing 76 n n 
C6 C16 B49 sing 77 n y 
C6 H6 B49 sing 78 n n 
C7 C15 B49 doub 79 n y 
C7 C17 B49 sing 80 n y 
C7 H7 B49 sing 81 n n 
C13 C3 B49 sing 82 n n 
C13 C18 B49 doub 83 n y 
C13 C19 B49 sing 84 n y 
C15 F29 B49 sing 85 n n 
C17 C20 B49 sing 86 n n 
C17 C16 B49 doub 87 n y 
C20 C21 B49 sing 88 n n 
C20 C12 B49 doub 89 z n 
C21 N24 B49 sing 90 n n 
C21 O27 B49 doub 91 n n 
C22 C19 B49 sing 92 n n 
C22 N25 B49 sing 93 n n 
C22 O28 B49 doub 94 n n 
C3 H3 B49 sing 95 n n 
C3 H3A B49 sing 96 n n 
C3 H3B B49 sing 97 n n 
C12 C18 B49 sing 98 n n 
C12 H12 B49 sing 99 n n 
C14 C19 B49 doub 100 n y 
C14 N23 B49 sing 101 n y 
C16 N24 B49 sing 102 n n 
C18 N23 B49 sing 103 n y 
N23 HN23 B49 sing 104 n n 
N24 HN24 B49 sing 105 n n 
N25 HN25 B49 sing 106 n n 
N25 C37 B49 sing 107 n n 
C37 C38 B49 sing 108 n n 
C38 N4 B49 sing 109 n n 
N4 C39 B49 sing 110 n n 
N4 C40 B49 sing 111 n n 
C40 C41 B49 sing 112 n n 
C39 C42 B49 sing 113 n n 
C37 H14 B49 sing 114 n n 
C37 H15 B49 sing 115 n n 
C38 H16 B49 sing 116 n n 
C38 H17 B49 sing 117 n n 
C39 H18 B49 sing 118 n n 
C39 H19 B49 sing 119 n n 
C40 H20 B49 sing 120 n n 
C40 H21 B49 sing 121 n n 
C41 H22 B49 sing 122 n n 
C41 H23 B49 sing 123 n n 
C41 H24 B49 sing 124 n n 
C42 H25 B49 sing 125 n n 
C42 H26 B49 sing 126 n n 
C42 H27 B49 sing 127 n n 
#
_atom_sites.entry_id                     6NFZ 
_atom_sites.fract_transf_matrix[1][1]    0.00667 
_atom_sites.fract_transf_matrix[1][2]    0.003851 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007701 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B49 A 1 401 9002 B49 B49 . 
D 2 B49 B 1 9001 9001 B49 B49 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 B49 . . . D 2 178.788 226.357 186.995 1 45.77 ? C4 B49 9001 B 1 
HETATM 2 C C5 B49 . . . D 2 185.798 233.114 188.733 1 45.72 ? C5 B49 9001 B 1 
HETATM 3 C C6 B49 . . . D 2 184.914 232.441 189.611 1 42.6 ? C6 B49 9001 B 1 
HETATM 4 C C7 B49 . . . D 2 184.709 232.058 186.821 1 40.4 ? C7 B49 9001 B 1 
HETATM 5 C C13 B49 . . . D 2 180.774 228.595 184.721 1 48.37 ? C13 B49 9001 B 1 
HETATM 6 C C15 B49 . . . D 2 185.694 232.921 187.341 1 45.04 ? C15 B49 9001 B 1 
HETATM 7 C C17 B49 . . . D 2 183.82 231.381 187.703 1 40.77 ? C17 B49 9001 B 1 
HETATM 8 C C20 B49 . . . D 2 182.701 230.429 187.441 1 40.48 ? C20 B49 9001 B 1 
HETATM 9 C C21 B49 . . . D 2 182.134 230.049 188.719 1 41.18 ? C21 B49 9001 B 1 
HETATM 10 C C22 B49 . . . D 2 178.997 226.877 183.799 1 47.28 ? C22 B49 9001 B 1 
HETATM 11 C C3 B49 . . . D 2 181.22 229.177 183.393 1 49.93 ? C3 B49 9001 B 1 
HETATM 12 C C12 B49 . . . D 2 182.334 230.025 186.216 1 38.84 ? C12 B49 9001 B 1 
HETATM 13 C C14 B49 . . . D 2 179.721 227.373 186.299 1 45.99 ? C14 B49 9001 B 1 
HETATM 14 C C16 B49 . . . D 2 183.921 231.571 189.087 1 41.42 ? C16 B49 9001 B 1 
HETATM 15 C C18 B49 . . . D 2 181.25 228.956 185.979 1 44.41 ? C18 B49 9001 B 1 
HETATM 16 C C19 B49 . . . D 2 179.799 227.593 184.912 1 46.99 ? C19 B49 9001 B 1 
HETATM 17 N N23 B49 . . . D 2 180.597 228.196 186.92 1 47.65 ? N23 B49 9001 B 1 
HETATM 18 N N24 B49 . . . D 2 182.863 230.737 189.747 1 39.08 ? N24 B49 9001 B 1 
HETATM 19 N N25 B49 . . . D 2 178.473 227.64 182.688 1 45.52 ? N25 B49 9001 B 1 
HETATM 20 O O27 B49 . . . D 2 181.208 229.289 188.903 1 40.55 ? O27 B49 9001 B 1 
HETATM 21 O O28 B49 . . . D 2 178.825 225.677 183.864 1 48.58 ? O28 B49 9001 B 1 
HETATM 22 F F29 B49 . . . D 2 186.532 233.557 186.51 1 50.83 ? F29 B49 9001 B 1 
HETATM 23 H H4 B49 . . . D 2 179.315 225.79 187.601 1 54.93 ? H4 B49 9001 B 1 
HETATM 24 H H4A B49 . . . D 2 178.352 225.795 186.314 1 54.93 ? H4A B49 9001 B 1 
HETATM 25 H H4B B49 . . . D 2 178.106 226.837 187.506 1 54.93 ? H4B B49 9001 B 1 
HETATM 26 H H5 B49 . . . D 2 186.49 233.719 189.097 1 54.87 ? H5 B49 9001 B 1 
HETATM 27 H H6 B49 . . . D 2 184.988 232.576 190.582 1 51.12 ? H6 B49 9001 B 1 
HETATM 28 H H7 B49 . . . D 2 184.636 231.924 185.859 1 48.48 ? H7 B49 9001 B 1 
HETATM 29 H H3 B49 . . . D 2 181.403 230.137 183.501 1 59.91 ? H3 B49 9001 B 1 
HETATM 30 H H3A B49 . . . D 2 180.513 229.052 182.73 1 59.91 ? H3A B49 9001 B 1 
HETATM 31 H H3B B49 . . . D 2 182.039 228.717 183.091 1 59.91 ? H3B B49 9001 B 1 
HETATM 32 H H12 B49 . . . D 2 182.867 230.317 185.457 1 46.6 ? H12 B49 9001 B 1 
HETATM 33 C C37 B49 . . . D 2 177.73 226.995 181.61 1 46.24 ? C37 B49 9001 B 1 
HETATM 34 H HN23 B49 . . . D 2 180.726 228.239 187.824 1 57.18 ? HN23 B49 9001 B 1 
HETATM 35 C C38 B49 . . . D 2 176.77 225.907 182.124 1 51.44 ? C38 B49 9001 B 1 
HETATM 36 H HN24 B49 . . . D 2 182.71 230.677 190.64 1 46.89 ? HN24 B49 9001 B 1 
HETATM 37 N N4 B49 . . . D 2 175.738 225.634 181.109 1 60.24 ? N4 B49 9001 B 1 
HETATM 38 H HN25 B49 . . . D 2 178.623 228.537 182.652 1 54.63 ? HN25 B49 9001 B 1 
HETATM 39 C C39 B49 . . . D 2 174.907 224.478 181.442 1 52.24 ? C39 B49 9001 B 1 
HETATM 40 C C40 B49 . . . D 2 174.89 226.804 180.965 1 54.04 ? C40 B49 9001 B 1 
HETATM 41 C C41 B49 . . . D 2 174.218 227.174 182.297 1 51.01 ? C41 B49 9001 B 1 
HETATM 42 C C42 B49 . . . D 2 175.698 223.267 181.983 1 43.14 ? C42 B49 9001 B 1 
HETATM 43 H H14 B49 . . . D 2 177.218 227.67 181.122 1 55.48 ? H14 B49 9001 B 1 
HETATM 44 H H15 B49 . . . D 2 178.361 226.583 181.001 1 55.48 ? H15 B49 9001 B 1 
HETATM 45 H H16 B49 . . . D 2 177.284 225.088 182.285 1 61.73 ? H16 B49 9001 B 1 
HETATM 46 H H17 B49 . . . D 2 176.351 226.202 182.96 1 61.73 ? H17 B49 9001 B 1 
HETATM 47 H H18 B49 . . . D 2 174.427 224.197 180.631 1 62.69 ? H18 B49 9001 B 1 
HETATM 48 H H19 B49 . . . D 2 174.254 224.745 182.113 1 62.69 ? H19 B49 9001 B 1 
HETATM 49 H H20 B49 . . . D 2 174.198 226.619 180.295 1 64.85 ? H20 B49 9001 B 1 
HETATM 50 H H21 B49 . . . D 2 175.441 227.565 180.66 1 64.85 ? H21 B49 9001 B 1 
HETATM 51 H H22 B49 . . . D 2 174.77 227.841 182.771 1 61.21 ? H22 B49 9001 B 1 
HETATM 52 H H23 B49 . . . D 2 174.131 226.382 182.843 1 61.21 ? H23 B49 9001 B 1 
HETATM 53 H H24 B49 . . . D 2 173.333 227.547 182.122 1 61.21 ? H24 B49 9001 B 1 
HETATM 54 H H25 B49 . . . D 2 175.074 222.637 182.417 1 51.77 ? H25 B49 9001 B 1 
HETATM 55 H H26 B49 . . . D 2 176.37 223.564 182.644 1 51.77 ? H26 B49 9001 B 1 
HETATM 56 H H27 B49 . . . D 2 176.155 222.811 181.232 1 51.77 ? H27 B49 9001 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           56 
#