data_6NHG # _model_server_result.job_id 4M0jZ0ZfROLYAuUDsUVgSQ _model_server_result.datetime_utc '2024-11-23 12:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1003}' # _entry.id 6NHG # _exptl.entry_id 6NHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.387 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL (2Z)-2-(2-{[6-(2-CYANOPHENOXY)PYRIMIDIN-4-YL]OXY}PHENYL)-3-METHOXYACRYLATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NHG _cell.length_a 154.181 _cell.length_b 154.181 _cell.length_c 598.18 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 154.181 154.181 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 R CAB HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 R CAC HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 R FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 R FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 T FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 T FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 T FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 T FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C22 H17 N3 O5' _chem_comp.formula_weight 403.387 _chem_comp.id AZO _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL (2Z)-2-(2-{[6-(2-CYANOPHENOXY)PYRIMIDIN-4-YL]OXY}PHENYL)-3-METHOXYACRYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AZOXYSTROBIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 AZO trip 249 n n C1 C2 AZO sing 250 n n C2 C3 AZO doub 251 n y C2 C7 AZO sing 252 n y C3 C4 AZO sing 253 n y C3 H3 AZO sing 254 n n C4 C5 AZO doub 255 n y C4 H4 AZO sing 256 n n C5 C6 AZO sing 257 n y C5 H5 AZO sing 258 n n C6 C7 AZO doub 259 n y C6 H6 AZO sing 260 n n C7 O1 AZO sing 261 n n O1 C8 AZO sing 262 n n C8 C9 AZO doub 263 n y C8 N2 AZO sing 264 n y C9 C10 AZO sing 265 n y C9 H9 AZO sing 266 n n C10 N3 AZO doub 267 n y C10 O2 AZO sing 268 n n N3 C11 AZO sing 269 n y C11 N2 AZO doub 270 n y C11 H11 AZO sing 271 n n O2 C12 AZO sing 272 n n C12 C13 AZO doub 273 n y C12 C17 AZO sing 274 n y C13 C14 AZO sing 275 n y C13 H13 AZO sing 276 n n C14 C15 AZO doub 277 n y C14 H14 AZO sing 278 n n C15 C16 AZO sing 279 n y C15 H15 AZO sing 280 n n C16 C17 AZO doub 281 n y C16 H16 AZO sing 282 n n C17 C18 AZO sing 283 n n C18 C19 AZO sing 284 n n C18 C21 AZO doub 285 e n C19 O3 AZO doub 286 n n C19 O4 AZO sing 287 n n O4 C20 AZO sing 288 n n C20 H201 AZO sing 289 n n C20 H202 AZO sing 290 n n C20 H203 AZO sing 291 n n C21 O5 AZO sing 292 n n C21 H21 AZO sing 293 n n O5 C22 AZO sing 294 n n C22 H221 AZO sing 295 n n C22 H222 AZO sing 296 n n C22 H223 AZO sing 297 n n # _atom_sites.entry_id 6NHG _atom_sites.fract_transf_matrix[1][1] 0.006486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 6PE A 1 501 2 6PE 6PE . M 13 CDL A 1 502 8 CDL CDL . N 14 HEM C 1 1001 1001 HEM HEM . O 14 HEM C 1 1002 1002 HEM HEM . P 15 AZO C 1 1003 1101 AZO AZO . Q 16 8PE C 1 1004 3 8PE 8PE . R 17 HEC D 1 1001 1001 HEC HEC . S 13 CDL D 1 1002 7 CDL CDL . T 18 FES E 1 1001 1001 FES FES . U 13 CDL G 1 101 6 CDL CDL . V 19 MC3 J 1 101 5 MC3 PX4 . W 12 6PE K 1 101 1 6PE 6PE . X 20 HOH A 1 601 1 HOH HOH . Y 20 HOH B 1 501 22 HOH HOH . Y 20 HOH B 2 502 2 HOH HOH . Y 20 HOH B 3 503 15 HOH HOH . Y 20 HOH B 4 504 9 HOH HOH . Y 20 HOH B 5 505 11 HOH HOH . Y 20 HOH B 6 506 4 HOH HOH . Y 20 HOH B 7 507 21 HOH HOH . Y 20 HOH B 8 508 10 HOH HOH . Y 20 HOH B 9 509 24 HOH HOH . Y 20 HOH B 10 510 16 HOH HOH . Y 20 HOH B 11 511 14 HOH HOH . Y 20 HOH B 12 512 20 HOH HOH . Y 20 HOH B 13 513 17 HOH HOH . Y 20 HOH B 14 514 12 HOH HOH . Y 20 HOH B 15 515 3 HOH HOH . Y 20 HOH B 16 516 23 HOH HOH . Y 20 HOH B 17 517 5 HOH HOH . Y 20 HOH B 18 518 8 HOH HOH . Y 20 HOH B 19 519 18 HOH HOH . Y 20 HOH B 20 520 7 HOH HOH . Y 20 HOH B 21 521 13 HOH HOH . Y 20 HOH B 22 522 6 HOH HOH . Y 20 HOH B 23 523 19 HOH HOH . Z 20 HOH C 1 1101 25 HOH HOH . AA 20 HOH F 1 201 26 HOH HOH . AA 20 HOH F 2 202 30 HOH HOH . AA 20 HOH F 3 203 28 HOH HOH . AA 20 HOH F 4 204 32 HOH HOH . AA 20 HOH F 5 205 27 HOH HOH . AA 20 HOH F 6 206 31 HOH HOH . BA 20 HOH G 1 201 33 HOH HOH . BA 20 HOH G 2 202 29 HOH HOH . CA 20 HOH I 1 101 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZO . . . P 15 74.923 53.667 164.528 1 104 ? N1 AZO 1003 C 1 HETATM 2 C C1 AZO . . . P 15 74.002 53.807 163.871 1 103.66 ? C1 AZO 1003 C 1 HETATM 3 C C2 AZO . . . P 15 72.849 53.983 163.051 1 104.08 ? C2 AZO 1003 C 1 HETATM 4 C C3 AZO . . . P 15 72.756 53.279 161.852 1 103.31 ? C3 AZO 1003 C 1 HETATM 5 C C4 AZO . . . P 15 71.655 53.422 161.034 1 102.39 ? C4 AZO 1003 C 1 HETATM 6 C C5 AZO . . . P 15 70.63 54.277 161.407 1 101.24 ? C5 AZO 1003 C 1 HETATM 7 C C6 AZO . . . P 15 70.715 54.982 162.59 1 101.91 ? C6 AZO 1003 C 1 HETATM 8 C C7 AZO . . . P 15 71.814 54.831 163.414 1 105.24 ? C7 AZO 1003 C 1 HETATM 9 O O1 AZO . . . P 15 71.836 55.578 164.592 1 110.54 ? O1 AZO 1003 C 1 HETATM 10 C C8 AZO . . . P 15 71.06 55.199 165.662 1 116.63 ? C8 AZO 1003 C 1 HETATM 11 C C9 AZO . . . P 15 71.121 56.009 166.781 1 121.22 ? C9 AZO 1003 C 1 HETATM 12 C C10 AZO . . . P 15 70.343 55.642 167.863 1 123.53 ? C10 AZO 1003 C 1 HETATM 13 N N3 AZO . . . P 15 69.583 54.552 167.797 1 123.9 ? N3 AZO 1003 C 1 HETATM 14 C C11 AZO . . . P 15 69.594 53.83 166.684 1 101.45 ? C11 AZO 1003 C 1 HETATM 15 N N2 AZO . . . P 15 70.31 54.125 165.604 1 99.71 ? N2 AZO 1003 C 1 HETATM 16 O O2 AZO . . . P 15 70.424 56.463 168.977 1 124.59 ? O2 AZO 1003 C 1 HETATM 17 C C12 AZO . . . P 15 69.632 56.2 170.123 1 105.86 ? C12 AZO 1003 C 1 HETATM 18 C C13 AZO . . . P 15 69.632 54.979 170.774 1 107.55 ? C13 AZO 1003 C 1 HETATM 19 C C14 AZO . . . P 15 68.847 54.779 171.891 1 117.26 ? C14 AZO 1003 C 1 HETATM 20 C C15 AZO . . . P 15 68.09 55.818 172.395 1 109.85 ? C15 AZO 1003 C 1 HETATM 21 C C16 AZO . . . P 15 68.12 57.044 171.764 1 130.42 ? C16 AZO 1003 C 1 HETATM 22 C C17 AZO . . . P 15 68.88 57.256 170.624 1 106.19 ? C17 AZO 1003 C 1 HETATM 23 C C18 AZO . . . P 15 68.882 58.595 169.993 1 107.23 ? C18 AZO 1003 C 1 HETATM 24 C C19 AZO . . . P 15 67.81 58.935 169.044 1 102.84 ? C19 AZO 1003 C 1 HETATM 25 O O3 AZO . . . P 15 66.885 58.227 168.745 1 102.63 ? O3 AZO 1003 C 1 HETATM 26 O O4 AZO . . . P 15 67.968 60.181 168.499 1 101.5 ? O4 AZO 1003 C 1 HETATM 27 C C20 AZO . . . P 15 67.026 60.711 167.533 1 99.79 ? C20 AZO 1003 C 1 HETATM 28 C C21 AZO . . . P 15 69.855 59.45 170.272 1 108.64 ? C21 AZO 1003 C 1 HETATM 29 O O5 AZO . . . P 15 70.84 59.153 171.143 1 111.98 ? O5 AZO 1003 C 1 HETATM 30 C C22 AZO . . . P 15 71.84 60.169 171.359 1 113.74 ? C22 AZO 1003 C 1 HETATM 31 H H3 AZO . . . P 15 73.555 52.623 161.574 1 124.64 ? H3 AZO 1003 C 1 HETATM 32 H H4 AZO . . . P 15 71.596 52.874 160.115 1 123.53 ? H4 AZO 1003 C 1 HETATM 33 H H5 AZO . . . P 15 69.768 54.396 160.782 1 122.16 ? H5 AZO 1003 C 1 HETATM 34 H H6 AZO . . . P 15 69.942 55.655 162.895 1 122.97 ? H6 AZO 1003 C 1 HETATM 35 H H9 AZO . . . P 15 71.741 56.875 166.803 1 146.13 ? H9 AZO 1003 C 1 HETATM 36 H H11 AZO . . . P 15 68.988 52.953 166.65 1 118.41 ? H11 AZO 1003 C 1 HETATM 37 H H13 AZO . . . P 15 70.249 54.184 170.404 1 125.72 ? H13 AZO 1003 C 1 HETATM 38 H H14 AZO . . . P 15 68.829 53.817 172.361 1 141.38 ? H14 AZO 1003 C 1 HETATM 39 H H15 AZO . . . P 15 67.485 55.675 173.267 1 128.49 ? H15 AZO 1003 C 1 HETATM 40 H H16 AZO . . . P 15 67.549 57.861 172.153 1 157.17 ? H16 AZO 1003 C 1 HETATM 41 H H201 AZO . . . P 15 67.501 61.455 166.912 1 116.41 ? H201 AZO 1003 C 1 HETATM 42 H H202 AZO . . . P 15 66.188 61.17 168.035 1 116.41 ? H202 AZO 1003 C 1 HETATM 43 H H203 AZO . . . P 15 66.653 59.923 166.897 1 116.41 ? H203 AZO 1003 C 1 HETATM 44 H H21 AZO . . . P 15 69.88 60.412 169.803 1 131.03 ? H21 AZO 1003 C 1 HETATM 45 H H221 AZO . . . P 15 72.714 59.751 171.841 1 137.16 ? H221 AZO 1003 C 1 HETATM 46 H H222 AZO . . . P 15 71.454 60.96 171.988 1 137.16 ? H222 AZO 1003 C 1 HETATM 47 H H223 AZO . . . P 15 72.151 60.607 170.419 1 137.16 ? H223 AZO 1003 C 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #