data_6NHG # _model_server_result.job_id RuHG9ikN0Ro8SsdyZtF5xA _model_server_result.datetime_utc '2024-11-23 12:46:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 6NHG # _exptl.entry_id 6NHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.42 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NHG _cell.length_a 154.181 _cell.length_b 154.181 _cell.length_c 598.18 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 154.181 154.181 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 R CAB HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 R CAC HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 R FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 R FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 T FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 T FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 T FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 T FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C17 H33 N O8 P -1' _chem_comp.formula_weight 410.42 _chem_comp.id 6PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 6PE sing 1 n n O2 P1 6PE doub 2 n n P1 O3 6PE sing 3 n n P1 O8 6PE sing 4 n n O3 C1 6PE sing 5 n n C1 C2 6PE sing 6 n n C1 H1 6PE sing 7 n n C1 H2 6PE sing 8 n n C2 C3 6PE sing 9 n n C2 O6 6PE sing 10 n n C2 H3 6PE sing 11 n n C3 O4 6PE sing 12 n n C3 H4 6PE sing 13 n n C3 H5 6PE sing 14 n n O4 C4 6PE sing 15 n n C4 O5 6PE doub 16 n n C4 C5 6PE sing 17 n n C5 C6 6PE sing 18 n n C5 H6 6PE sing 19 n n C5 H7 6PE sing 20 n n C6 C7 6PE sing 21 n n C6 H8 6PE sing 22 n n C6 H9 6PE sing 23 n n C7 C8 6PE sing 24 n n C7 H10 6PE sing 25 n n C7 H11 6PE sing 26 n n C8 C9 6PE sing 27 n n C8 H12 6PE sing 28 n n C8 H13 6PE sing 29 n n C9 H14 6PE sing 30 n n C9 H15 6PE sing 31 n n C9 H16 6PE sing 32 n n O6 C10 6PE sing 33 n n C10 O7 6PE doub 34 n n C10 C11 6PE sing 35 n n C11 C12 6PE sing 36 n n C11 H17 6PE sing 37 n n C11 H18 6PE sing 38 n n C12 C13 6PE sing 39 n n C12 H19 6PE sing 40 n n C12 H20 6PE sing 41 n n C13 C14 6PE sing 42 n n C13 H21 6PE sing 43 n n C13 H22 6PE sing 44 n n C14 C15 6PE sing 45 n n C14 H23 6PE sing 46 n n C14 H24 6PE sing 47 n n C15 H25 6PE sing 48 n n C15 H26 6PE sing 49 n n C15 H27 6PE sing 50 n n O8 C16 6PE sing 51 n n C16 C17 6PE sing 52 n n C16 H28 6PE sing 53 n n C16 H29 6PE sing 54 n n C17 N1 6PE sing 55 n n C17 H30 6PE sing 56 n n C17 H31 6PE sing 57 n n N1 H32 6PE sing 58 n n N1 H33 6PE sing 59 n n # _atom_sites.entry_id 6NHG _atom_sites.fract_transf_matrix[1][1] 0.006486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 6PE A 1 501 2 6PE 6PE . M 13 CDL A 1 502 8 CDL CDL . N 14 HEM C 1 1001 1001 HEM HEM . O 14 HEM C 1 1002 1002 HEM HEM . P 15 AZO C 1 1003 1101 AZO AZO . Q 16 8PE C 1 1004 3 8PE 8PE . R 17 HEC D 1 1001 1001 HEC HEC . S 13 CDL D 1 1002 7 CDL CDL . T 18 FES E 1 1001 1001 FES FES . U 13 CDL G 1 101 6 CDL CDL . V 19 MC3 J 1 101 5 MC3 PX4 . W 12 6PE K 1 101 1 6PE 6PE . X 20 HOH A 1 601 1 HOH HOH . Y 20 HOH B 1 501 22 HOH HOH . Y 20 HOH B 2 502 2 HOH HOH . Y 20 HOH B 3 503 15 HOH HOH . Y 20 HOH B 4 504 9 HOH HOH . Y 20 HOH B 5 505 11 HOH HOH . Y 20 HOH B 6 506 4 HOH HOH . Y 20 HOH B 7 507 21 HOH HOH . Y 20 HOH B 8 508 10 HOH HOH . Y 20 HOH B 9 509 24 HOH HOH . Y 20 HOH B 10 510 16 HOH HOH . Y 20 HOH B 11 511 14 HOH HOH . Y 20 HOH B 12 512 20 HOH HOH . Y 20 HOH B 13 513 17 HOH HOH . Y 20 HOH B 14 514 12 HOH HOH . Y 20 HOH B 15 515 3 HOH HOH . Y 20 HOH B 16 516 23 HOH HOH . Y 20 HOH B 17 517 5 HOH HOH . Y 20 HOH B 18 518 8 HOH HOH . Y 20 HOH B 19 519 18 HOH HOH . Y 20 HOH B 20 520 7 HOH HOH . Y 20 HOH B 21 521 13 HOH HOH . Y 20 HOH B 22 522 6 HOH HOH . Y 20 HOH B 23 523 19 HOH HOH . Z 20 HOH C 1 1101 25 HOH HOH . AA 20 HOH F 1 201 26 HOH HOH . AA 20 HOH F 2 202 30 HOH HOH . AA 20 HOH F 3 203 28 HOH HOH . AA 20 HOH F 4 204 32 HOH HOH . AA 20 HOH F 5 205 27 HOH HOH . AA 20 HOH F 6 206 31 HOH HOH . BA 20 HOH G 1 201 33 HOH HOH . BA 20 HOH G 2 202 29 HOH HOH . CA 20 HOH I 1 101 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6PE . . . L 12 54.151 84.077 137.025 1 101.52 ? O1 6PE 501 A 1 HETATM 2 O O2 6PE . . . L 12 51.934 85.036 136.078 1 102.21 ? O2 6PE 501 A 1 HETATM 3 P P1 6PE . . . L 12 53.229 85.225 136.784 1 97.49 ? P1 6PE 501 A 1 HETATM 4 O O3 6PE . . . L 12 52.897 85.893 138.348 1 102.2 ? O3 6PE 501 A 1 HETATM 5 C C1 6PE . . . L 12 52.576 85.022 139.367 1 104.65 ? C1 6PE 501 A 1 HETATM 6 C C2 6PE . . . L 12 53.809 84.606 140.247 1 108.35 ? C2 6PE 501 A 1 HETATM 7 C C3 6PE . . . L 12 54.884 85.797 140.305 1 111.41 ? C3 6PE 501 A 1 HETATM 8 O O4 6PE . . . L 12 55.668 85.858 141.515 1 112.1 ? O4 6PE 501 A 1 HETATM 9 C C4 6PE . . . L 12 55.171 86.603 142.589 1 112.28 ? C4 6PE 501 A 1 HETATM 10 O O5 6PE . . . L 12 54.063 86.405 142.99 1 110.48 ? O5 6PE 501 A 1 HETATM 11 C C5 6PE . . . L 12 56.19 87.446 143.443 1 113.07 ? C5 6PE 501 A 1 HETATM 12 C C6 6PE . . . L 12 55.582 88.354 144.577 1 113.62 ? C6 6PE 501 A 1 HETATM 13 C C7 6PE . . . L 12 56.397 88.518 145.902 1 114.23 ? C7 6PE 501 A 1 HETATM 14 C C8 6PE . . . L 12 55.628 89.073 147.123 1 114 ? C8 6PE 501 A 1 HETATM 15 C C9 6PE . . . L 12 56.473 89.408 148.347 1 114.17 ? C9 6PE 501 A 1 HETATM 16 O O6 6PE . . . L 12 53.45 84.168 141.572 1 108.42 ? O6 6PE 501 A 1 HETATM 17 C C10 6PE . . . L 12 53.749 82.853 141.944 1 108.88 ? C10 6PE 501 A 1 HETATM 18 O O7 6PE . . . L 12 53.003 81.978 141.628 1 107.51 ? O7 6PE 501 A 1 HETATM 19 C C11 6PE . . . L 12 55.252 82.521 142.24 1 110.82 ? C11 6PE 501 A 1 HETATM 20 C C12 6PE . . . L 12 55.518 81.824 143.614 1 113.17 ? C12 6PE 501 A 1 HETATM 21 C C13 6PE . . . L 12 56.484 82.545 144.594 1 114.02 ? C13 6PE 501 A 1 HETATM 22 C C14 6PE . . . L 12 56.926 81.737 145.828 1 114.72 ? C14 6PE 501 A 1 HETATM 23 C C15 6PE . . . L 12 57.837 82.475 146.804 1 114.71 ? C15 6PE 501 A 1 HETATM 24 O O8 6PE . . . L 12 54.146 86.468 135.995 1 95.03 ? O8 6PE 501 A 1 HETATM 25 C C16 6PE . . . L 12 53.447 87.558 135.478 1 91.98 ? C16 6PE 501 A 1 HETATM 26 C C17 6PE . . . L 12 54.2 88.209 134.299 1 92.59 ? C17 6PE 501 A 1 HETATM 27 N N1 6PE . . . L 12 53.493 89.382 133.765 1 95.22 ? N1 6PE 501 A 1 HETATM 28 H H1 6PE . . . L 12 52.108 84.103 138.996 1 126.24 ? H1 6PE 501 A 1 HETATM 29 H H2 6PE . . . L 12 51.811 85.429 140.037 1 126.24 ? H2 6PE 501 A 1 HETATM 30 H H3 6PE . . . L 12 54.264 83.774 139.668 1 130.69 ? H3 6PE 501 A 1 HETATM 31 H H4 6PE . . . L 12 54.354 86.748 140.122 1 134.36 ? H4 6PE 501 A 1 HETATM 32 H H5 6PE . . . L 12 55.529 85.721 139.412 1 134.36 ? H5 6PE 501 A 1 HETATM 33 H H6 6PE . . . L 12 56.794 88.088 142.803 1 136.35 ? H6 6PE 501 A 1 HETATM 34 H H7 6PE . . . L 12 56.933 86.8 143.908 1 136.35 ? H7 6PE 501 A 1 HETATM 35 H H8 6PE . . . L 12 54.584 87.978 144.832 1 137.01 ? H8 6PE 501 A 1 HETATM 36 H H9 6PE . . . L 12 55.391 89.353 144.165 1 137.01 ? H9 6PE 501 A 1 HETATM 37 H H10 6PE . . . L 12 57.27 89.17 145.741 1 137.74 ? H10 6PE 501 A 1 HETATM 38 H H11 6PE . . . L 12 56.843 87.558 146.204 1 137.74 ? H11 6PE 501 A 1 HETATM 39 H H12 6PE . . . L 12 54.847 88.375 147.463 1 137.46 ? H12 6PE 501 A 1 HETATM 40 H H13 6PE . . . L 12 55.066 89.985 146.87 1 137.46 ? H13 6PE 501 A 1 HETATM 41 H H14 6PE . . . L 12 55.925 89.965 149.123 1 137.67 ? H14 6PE 501 A 1 HETATM 42 H H15 6PE . . . L 12 57.353 90.03 148.12 1 137.67 ? H15 6PE 501 A 1 HETATM 43 H H16 6PE . . . L 12 56.876 88.523 148.863 1 137.67 ? H16 6PE 501 A 1 HETATM 44 H H17 6PE . . . L 12 55.881 83.421 142.21 1 133.65 ? H17 6PE 501 A 1 HETATM 45 H H18 6PE . . . L 12 55.688 81.878 141.464 1 133.65 ? H18 6PE 501 A 1 HETATM 46 H H19 6PE . . . L 12 55.908 80.816 143.428 1 136.47 ? H19 6PE 501 A 1 HETATM 47 H H20 6PE . . . L 12 54.56 81.674 144.125 1 136.47 ? H20 6PE 501 A 1 HETATM 48 H H21 6PE . . . L 12 56.023 83.482 144.941 1 137.49 ? H21 6PE 501 A 1 HETATM 49 H H22 6PE . . . L 12 57.384 82.869 144.051 1 137.49 ? H22 6PE 501 A 1 HETATM 50 H H23 6PE . . . L 12 57.436 80.811 145.517 1 138.33 ? H23 6PE 501 A 1 HETATM 51 H H24 6PE . . . L 12 56.047 81.377 146.386 1 138.33 ? H24 6PE 501 A 1 HETATM 52 H H25 6PE . . . L 12 57.954 81.961 147.761 1 138.32 ? H25 6PE 501 A 1 HETATM 53 H H26 6PE . . . L 12 57.482 83.476 147.057 1 138.32 ? H26 6PE 501 A 1 HETATM 54 H H27 6PE . . . L 12 58.852 82.616 146.428 1 138.32 ? H27 6PE 501 A 1 HETATM 55 H H28 6PE . . . L 12 53.255 88.316 136.264 1 111.04 ? H28 6PE 501 A 1 HETATM 56 H H29 6PE . . . L 12 52.43 87.261 135.154 1 111.04 ? H29 6PE 501 A 1 HETATM 57 H H30 6PE . . . L 12 54.357 87.462 133.504 1 111.77 ? H30 6PE 501 A 1 HETATM 58 H H31 6PE . . . L 12 55.217 88.489 134.62 1 111.77 ? H31 6PE 501 A 1 HETATM 59 H H32 6PE . . . L 12 54.092 90.2 133.791 1 114.93 ? H32 6PE 501 A 1 HETATM 60 H H33 6PE . . . L 12 52.552 89.129 133.48 1 114.93 ? H33 6PE 501 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #