data_6NHH # _model_server_result.job_id '_s_WlXPtVfJyAFvnN8QhDA' _model_server_result.datetime_utc '2024-11-23 14:14:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":304}' # _entry.id 6NHH # _exptl.entry_id 6NHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.36 _cell.angle_gamma 90 _cell.entry_id 6NHH _cell.length_a 89.309 _cell.length_b 154.655 _cell.length_c 100.939 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 O N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 145 B CYS 145 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 C SG CYS 134 C CYS 134 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 145 F CYS 145 1_555 E SG CYS 169 F CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 134 G CYS 134 1_555 F SG CYS 151 G CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B SG CYS 36 B CYS 36 1_555 N CAB HEC . B HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale2 B SG CYS 39 B CYS 39 1_555 N CAC HEC . B HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale3 E SG CYS 36 F CYS 36 1_555 V CAB HEC . F HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale4 E SG CYS 39 F CYS 39 1_555 V CAC HEC . F HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 G FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A NE2 HIS 111 A HIS 111 1_555 H FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A NE2 HIS 198 A HIS 198 1_555 G FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 A NE2 HIS 212 A HIS 212 1_555 H FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 B OD1 ASP 8 B ASP 8 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc6 B O VAL 9 B VAL 9 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc7 B OE1 GLU 14 B GLU 14 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc8 B OE2 GLU 14 B GLU 14 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc9 B NE2 HIS 40 B HIS 40 1_555 N FE HEC . B HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc10 B OE1 GLU 129 B GLU 129 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc11 B OE2 GLU 129 B GLU 129 1_555 O SR SR . B SR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc12 B SD MET 185 B MET 185 1_555 N FE HEC . B HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc13 C SG CYS 129 C CYS 129 1_555 P FE1 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc14 C ND1 HIS 131 C HIS 131 1_555 P FE2 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc15 C SG CYS 149 C CYS 149 1_555 P FE1 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc16 C ND1 HIS 152 C HIS 152 1_555 P FE2 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc17 D NE2 HIS 97 E HIS 97 1_555 Q FE HEM . E HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc18 D NE2 HIS 111 E HIS 111 1_555 R FE HEM . E HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc19 D NE2 HIS 198 E HIS 198 1_555 Q FE HEM . E HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc20 D NE2 HIS 212 E HIS 212 1_555 R FE HEM . E HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc21 E OD1 ASP 8 F ASP 8 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc22 E O VAL 9 F VAL 9 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc23 E OE1 GLU 14 F GLU 14 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc24 E OE2 GLU 14 F GLU 14 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc25 E NE2 HIS 40 F HIS 40 1_555 V FE HEC . F HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc26 E OE1 GLU 129 F GLU 129 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc27 E OE2 GLU 129 F GLU 129 1_555 X SR SR . F SR 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc28 E SD MET 185 F MET 185 1_555 V FE HEC . F HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc29 F SG CYS 129 G CYS 129 1_555 Y FE1 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc30 F ND1 HIS 131 G HIS 131 1_555 Y FE2 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc31 F SG CYS 149 G CYS 149 1_555 Y FE1 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc32 F ND1 HIS 152 G HIS 152 1_555 Y FE2 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NHH _atom_sites.fract_transf_matrix[1][1] 0.011197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HEM A 1 1001 1001 HEM HEM . H 4 HEM A 1 1002 1002 HEM HEM . I 5 AZO A 1 1003 1101 AZO AZO . J 6 6PE A 1 1004 2001 6PE 6PE . K 7 8SP A 1 1005 2001 8SP 8SP . L 8 SR A 1 1006 3 SR SR . M 9 BOG B 1 301 2010 BOG BOG . N 10 HEC B 1 302 1001 HEC HEC . O 8 SR B 1 303 1 SR SR . P 11 FES C 1 1001 1001 FES FES . Q 4 HEM E 1 1001 1001 HEM HEM . R 4 HEM E 1 1002 1002 HEM HEM . S 5 AZO E 1 1003 1101 AZO AZO . T 6 6PE E 1 1004 2001 6PE 6PE . U 9 BOG F 1 301 2010 BOG BOG . V 10 HEC F 1 302 1001 HEC HEC . W 7 8SP F 1 303 2001 8SP 8SP . X 8 SR F 1 304 2 SR SR . Y 11 FES G 1 1001 1001 FES FES . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 8 _atom_site.Cartn_x -7.389 _atom_site.Cartn_y 46.263 _atom_site.Cartn_z 5.787 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 304 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #