data_6NJA # _model_server_result.job_id NCc-7xJsid07BKXZdT5HAg _model_server_result.datetime_utc '2024-11-29 09:16:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 6NJA # _exptl.entry_id 6NJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.05 _cell.angle_gamma 90 _cell.entry_id 6NJA _cell.length_a 71.703 _cell.length_b 70.816 _cell.length_c 78.869 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 200 A VAL 899 1_555 A N PTR 201 A PTR 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C PTR 201 A PTR 900 1_555 A N GLU 202 A GLU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 99 n n C O2 FMT sing 100 n n C H FMT sing 101 n n O2 HO2 FMT sing 102 n n # _atom_sites.entry_id 6NJA _atom_sites.fract_transf_matrix[1][1] 0.013946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002978 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE A 1 1101 1 ADE AMP . C 3 FMT A 1 1102 2 FMT FMT . D 3 FMT A 1 1103 3 FMT FMT . E 4 HOH A 1 1201 191 HOH HOH . E 4 HOH A 2 1202 155 HOH HOH . E 4 HOH A 3 1203 202 HOH HOH . E 4 HOH A 4 1204 199 HOH HOH . E 4 HOH A 5 1205 11 HOH HOH . E 4 HOH A 6 1206 170 HOH HOH . E 4 HOH A 7 1207 93 HOH HOH . E 4 HOH A 8 1208 119 HOH HOH . E 4 HOH A 9 1209 37 HOH HOH . E 4 HOH A 10 1210 75 HOH HOH . E 4 HOH A 11 1211 143 HOH HOH . E 4 HOH A 12 1212 129 HOH HOH . E 4 HOH A 13 1213 77 HOH HOH . E 4 HOH A 14 1214 105 HOH HOH . E 4 HOH A 15 1215 188 HOH HOH . E 4 HOH A 16 1216 116 HOH HOH . E 4 HOH A 17 1217 91 HOH HOH . E 4 HOH A 18 1218 145 HOH HOH . E 4 HOH A 19 1219 174 HOH HOH . E 4 HOH A 20 1220 197 HOH HOH . E 4 HOH A 21 1221 43 HOH HOH . E 4 HOH A 22 1222 173 HOH HOH . E 4 HOH A 23 1223 50 HOH HOH . E 4 HOH A 24 1224 142 HOH HOH . E 4 HOH A 25 1225 112 HOH HOH . E 4 HOH A 26 1226 59 HOH HOH . E 4 HOH A 27 1227 100 HOH HOH . E 4 HOH A 28 1228 90 HOH HOH . E 4 HOH A 29 1229 128 HOH HOH . E 4 HOH A 30 1230 97 HOH HOH . E 4 HOH A 31 1231 117 HOH HOH . E 4 HOH A 32 1232 156 HOH HOH . E 4 HOH A 33 1233 98 HOH HOH . E 4 HOH A 34 1234 44 HOH HOH . E 4 HOH A 35 1235 140 HOH HOH . E 4 HOH A 36 1236 205 HOH HOH . E 4 HOH A 37 1237 25 HOH HOH . E 4 HOH A 38 1238 68 HOH HOH . E 4 HOH A 39 1239 108 HOH HOH . E 4 HOH A 40 1240 114 HOH HOH . E 4 HOH A 41 1241 107 HOH HOH . E 4 HOH A 42 1242 118 HOH HOH . E 4 HOH A 43 1243 206 HOH HOH . E 4 HOH A 44 1244 13 HOH HOH . E 4 HOH A 45 1245 154 HOH HOH . E 4 HOH A 46 1246 148 HOH HOH . E 4 HOH A 47 1247 15 HOH HOH . E 4 HOH A 48 1248 47 HOH HOH . E 4 HOH A 49 1249 144 HOH HOH . E 4 HOH A 50 1250 10 HOH HOH . E 4 HOH A 51 1251 171 HOH HOH . E 4 HOH A 52 1252 49 HOH HOH . E 4 HOH A 53 1253 40 HOH HOH . E 4 HOH A 54 1254 185 HOH HOH . E 4 HOH A 55 1255 82 HOH HOH . E 4 HOH A 56 1256 23 HOH HOH . E 4 HOH A 57 1257 41 HOH HOH . E 4 HOH A 58 1258 151 HOH HOH . E 4 HOH A 59 1259 39 HOH HOH . E 4 HOH A 60 1260 6 HOH HOH . E 4 HOH A 61 1261 126 HOH HOH . E 4 HOH A 62 1262 31 HOH HOH . E 4 HOH A 63 1263 162 HOH HOH . E 4 HOH A 64 1264 70 HOH HOH . E 4 HOH A 65 1265 175 HOH HOH . E 4 HOH A 66 1266 2 HOH HOH . E 4 HOH A 67 1267 46 HOH HOH . E 4 HOH A 68 1268 14 HOH HOH . E 4 HOH A 69 1269 121 HOH HOH . E 4 HOH A 70 1270 7 HOH HOH . E 4 HOH A 71 1271 28 HOH HOH . E 4 HOH A 72 1272 42 HOH HOH . E 4 HOH A 73 1273 166 HOH HOH . E 4 HOH A 74 1274 127 HOH HOH . E 4 HOH A 75 1275 86 HOH HOH . E 4 HOH A 76 1276 38 HOH HOH . E 4 HOH A 77 1277 80 HOH HOH . E 4 HOH A 78 1278 45 HOH HOH . E 4 HOH A 79 1279 36 HOH HOH . E 4 HOH A 80 1280 88 HOH HOH . E 4 HOH A 81 1281 26 HOH HOH . E 4 HOH A 82 1282 30 HOH HOH . E 4 HOH A 83 1283 48 HOH HOH . E 4 HOH A 84 1284 3 HOH HOH . E 4 HOH A 85 1285 16 HOH HOH . E 4 HOH A 86 1286 120 HOH HOH . E 4 HOH A 87 1287 34 HOH HOH . E 4 HOH A 88 1288 57 HOH HOH . E 4 HOH A 89 1289 130 HOH HOH . E 4 HOH A 90 1290 76 HOH HOH . E 4 HOH A 91 1291 165 HOH HOH . E 4 HOH A 92 1292 102 HOH HOH . E 4 HOH A 93 1293 62 HOH HOH . E 4 HOH A 94 1294 141 HOH HOH . E 4 HOH A 95 1295 1 HOH HOH . E 4 HOH A 96 1296 138 HOH HOH . E 4 HOH A 97 1297 21 HOH HOH . E 4 HOH A 98 1298 29 HOH HOH . E 4 HOH A 99 1299 58 HOH HOH . E 4 HOH A 100 1300 53 HOH HOH . E 4 HOH A 101 1301 79 HOH HOH . E 4 HOH A 102 1302 163 HOH HOH . E 4 HOH A 103 1303 64 HOH HOH . E 4 HOH A 104 1304 161 HOH HOH . E 4 HOH A 105 1305 66 HOH HOH . E 4 HOH A 106 1306 12 HOH HOH . E 4 HOH A 107 1307 55 HOH HOH . E 4 HOH A 108 1308 9 HOH HOH . E 4 HOH A 109 1309 69 HOH HOH . E 4 HOH A 110 1310 65 HOH HOH . E 4 HOH A 111 1311 115 HOH HOH . E 4 HOH A 112 1312 133 HOH HOH . E 4 HOH A 113 1313 35 HOH HOH . E 4 HOH A 114 1314 17 HOH HOH . E 4 HOH A 115 1315 32 HOH HOH . E 4 HOH A 116 1316 56 HOH HOH . E 4 HOH A 117 1317 51 HOH HOH . E 4 HOH A 118 1318 81 HOH HOH . E 4 HOH A 119 1319 137 HOH HOH . E 4 HOH A 120 1320 19 HOH HOH . E 4 HOH A 121 1321 187 HOH HOH . E 4 HOH A 122 1322 124 HOH HOH . E 4 HOH A 123 1323 125 HOH HOH . E 4 HOH A 124 1324 18 HOH HOH . E 4 HOH A 125 1325 83 HOH HOH . E 4 HOH A 126 1326 8 HOH HOH . E 4 HOH A 127 1327 94 HOH HOH . E 4 HOH A 128 1328 146 HOH HOH . E 4 HOH A 129 1329 181 HOH HOH . E 4 HOH A 130 1330 27 HOH HOH . E 4 HOH A 131 1331 178 HOH HOH . E 4 HOH A 132 1332 179 HOH HOH . E 4 HOH A 133 1333 167 HOH HOH . E 4 HOH A 134 1334 182 HOH HOH . E 4 HOH A 135 1335 52 HOH HOH . E 4 HOH A 136 1336 135 HOH HOH . E 4 HOH A 137 1337 85 HOH HOH . E 4 HOH A 138 1338 152 HOH HOH . E 4 HOH A 139 1339 73 HOH HOH . E 4 HOH A 140 1340 131 HOH HOH . E 4 HOH A 141 1341 198 HOH HOH . E 4 HOH A 142 1342 20 HOH HOH . E 4 HOH A 143 1343 72 HOH HOH . E 4 HOH A 144 1344 111 HOH HOH . E 4 HOH A 145 1345 194 HOH HOH . E 4 HOH A 146 1346 168 HOH HOH . E 4 HOH A 147 1347 203 HOH HOH . E 4 HOH A 148 1348 204 HOH HOH . E 4 HOH A 149 1349 158 HOH HOH . E 4 HOH A 150 1350 60 HOH HOH . E 4 HOH A 151 1351 139 HOH HOH . E 4 HOH A 152 1352 201 HOH HOH . E 4 HOH A 153 1353 33 HOH HOH . E 4 HOH A 154 1354 71 HOH HOH . E 4 HOH A 155 1355 160 HOH HOH . E 4 HOH A 156 1356 200 HOH HOH . E 4 HOH A 157 1357 78 HOH HOH . E 4 HOH A 158 1358 157 HOH HOH . E 4 HOH A 159 1359 106 HOH HOH . E 4 HOH A 160 1360 87 HOH HOH . E 4 HOH A 161 1361 104 HOH HOH . E 4 HOH A 162 1362 103 HOH HOH . E 4 HOH A 163 1363 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 3 70.032 -8.356 5.381 1 29.03 ? C FMT 1103 A 1 HETATM 2 O O1 FMT . . . D 3 69.028 -8.964 5.653 1 35.75 ? O1 FMT 1103 A 1 HETATM 3 O O2 FMT . . . D 3 70.975 -8.208 6.178 1 30.43 ? O2 FMT 1103 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 3 #