data_6NJY # _model_server_result.job_id GyPMWYsjumLCzZZll2wuWQ _model_server_result.datetime_utc '2025-08-31 20:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6njy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":311}' # _entry.id 6NJY # _exptl.entry_id 6NJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NJY _cell.length_a 85.541 _cell.length_b 85.541 _cell.length_c 142.587 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 M N N ? 3 X N N ? 3 Y N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6NJY _atom_sites.fract_transf_matrix[1][1] 0.01169 _atom_sites.fract_transf_matrix[1][2] 0.006749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 1 SO4 SO4 . D 2 SO4 A 1 302 2 SO4 SO4 . E 2 SO4 A 1 303 7 SO4 SO4 . F 2 SO4 A 1 304 8 SO4 SO4 . G 2 SO4 A 1 305 9 SO4 SO4 . H 2 SO4 A 1 306 15 SO4 SO4 . I 2 SO4 A 1 307 19 SO4 SO4 . J 2 SO4 A 1 308 21 SO4 SO4 . K 2 SO4 A 1 309 22 SO4 SO4 . L 3 BGC A 1 310 2 BGC BGC . M 3 BGC A 1 311 3 BGC BGC . N 2 SO4 B 1 301 3 SO4 SO4 . O 2 SO4 B 1 302 4 SO4 SO4 . P 2 SO4 B 1 303 5 SO4 SO4 . Q 2 SO4 B 1 304 10 SO4 SO4 . R 2 SO4 B 1 305 11 SO4 SO4 . S 2 SO4 B 1 306 12 SO4 SO4 . T 2 SO4 B 1 307 13 SO4 SO4 . U 2 SO4 B 1 308 16 SO4 SO4 . V 2 SO4 B 1 309 18 SO4 SO4 . W 2 SO4 B 1 310 20 SO4 SO4 . X 3 BGC B 1 311 1 BGC BGC . Y 3 BGC B 1 312 4 BGC BGC . Z 4 HOH A 1 401 39 HOH HOH . Z 4 HOH A 2 402 86 HOH HOH . Z 4 HOH A 3 403 106 HOH HOH . Z 4 HOH A 4 404 31 HOH HOH . Z 4 HOH A 5 405 123 HOH HOH . Z 4 HOH A 6 406 100 HOH HOH . Z 4 HOH A 7 407 117 HOH HOH . Z 4 HOH A 8 408 51 HOH HOH . Z 4 HOH A 9 409 160 HOH HOH . Z 4 HOH A 10 410 42 HOH HOH . Z 4 HOH A 11 411 129 HOH HOH . Z 4 HOH A 12 412 151 HOH HOH . Z 4 HOH A 13 413 102 HOH HOH . Z 4 HOH A 14 414 13 HOH HOH . Z 4 HOH A 15 415 7 HOH HOH . Z 4 HOH A 16 416 85 HOH HOH . Z 4 HOH A 17 417 92 HOH HOH . Z 4 HOH A 18 418 44 HOH HOH . Z 4 HOH A 19 419 21 HOH HOH . Z 4 HOH A 20 420 19 HOH HOH . Z 4 HOH A 21 421 22 HOH HOH . Z 4 HOH A 22 422 41 HOH HOH . Z 4 HOH A 23 423 16 HOH HOH . Z 4 HOH A 24 424 101 HOH HOH . Z 4 HOH A 25 425 55 HOH HOH . Z 4 HOH A 26 426 67 HOH HOH . Z 4 HOH A 27 427 103 HOH HOH . Z 4 HOH A 28 428 29 HOH HOH . Z 4 HOH A 29 429 91 HOH HOH . Z 4 HOH A 30 430 46 HOH HOH . Z 4 HOH A 31 431 127 HOH HOH . Z 4 HOH A 32 432 60 HOH HOH . Z 4 HOH A 33 433 26 HOH HOH . Z 4 HOH A 34 434 14 HOH HOH . Z 4 HOH A 35 435 47 HOH HOH . Z 4 HOH A 36 436 2 HOH HOH . Z 4 HOH A 37 437 36 HOH HOH . Z 4 HOH A 38 438 20 HOH HOH . Z 4 HOH A 39 439 87 HOH HOH . Z 4 HOH A 40 440 15 HOH HOH . Z 4 HOH A 41 441 11 HOH HOH . Z 4 HOH A 42 442 74 HOH HOH . Z 4 HOH A 43 443 83 HOH HOH . Z 4 HOH A 44 444 112 HOH HOH . Z 4 HOH A 45 445 72 HOH HOH . Z 4 HOH A 46 446 70 HOH HOH . Z 4 HOH A 47 447 61 HOH HOH . Z 4 HOH A 48 448 116 HOH HOH . Z 4 HOH A 49 449 53 HOH HOH . Z 4 HOH A 50 450 76 HOH HOH . Z 4 HOH A 51 451 126 HOH HOH . Z 4 HOH A 52 452 130 HOH HOH . Z 4 HOH A 53 453 98 HOH HOH . Z 4 HOH A 54 454 124 HOH HOH . Z 4 HOH A 55 455 64 HOH HOH . Z 4 HOH A 56 456 147 HOH HOH . Z 4 HOH A 57 457 115 HOH HOH . Z 4 HOH A 58 458 138 HOH HOH . Z 4 HOH A 59 459 137 HOH HOH . AA 4 HOH B 1 401 79 HOH HOH . AA 4 HOH B 2 402 132 HOH HOH . AA 4 HOH B 3 403 121 HOH HOH . AA 4 HOH B 4 404 35 HOH HOH . AA 4 HOH B 5 405 30 HOH HOH . AA 4 HOH B 6 406 69 HOH HOH . AA 4 HOH B 7 407 134 HOH HOH . AA 4 HOH B 8 408 105 HOH HOH . AA 4 HOH B 9 409 71 HOH HOH . AA 4 HOH B 10 410 135 HOH HOH . AA 4 HOH B 11 411 57 HOH HOH . AA 4 HOH B 12 412 154 HOH HOH . AA 4 HOH B 13 413 122 HOH HOH . AA 4 HOH B 14 414 25 HOH HOH . AA 4 HOH B 15 415 6 HOH HOH . AA 4 HOH B 16 416 4 HOH HOH . AA 4 HOH B 17 417 139 HOH HOH . AA 4 HOH B 18 418 45 HOH HOH . AA 4 HOH B 19 419 120 HOH HOH . AA 4 HOH B 20 420 110 HOH HOH . AA 4 HOH B 21 421 43 HOH HOH . AA 4 HOH B 22 422 84 HOH HOH . AA 4 HOH B 23 423 66 HOH HOH . AA 4 HOH B 24 424 125 HOH HOH . AA 4 HOH B 25 425 109 HOH HOH . AA 4 HOH B 26 426 94 HOH HOH . AA 4 HOH B 27 427 82 HOH HOH . AA 4 HOH B 28 428 9 HOH HOH . AA 4 HOH B 29 429 95 HOH HOH . AA 4 HOH B 30 430 149 HOH HOH . AA 4 HOH B 31 431 104 HOH HOH . AA 4 HOH B 32 432 90 HOH HOH . AA 4 HOH B 33 433 128 HOH HOH . AA 4 HOH B 34 434 152 HOH HOH . AA 4 HOH B 35 435 54 HOH HOH . AA 4 HOH B 36 436 5 HOH HOH . AA 4 HOH B 37 437 40 HOH HOH . AA 4 HOH B 38 438 18 HOH HOH . AA 4 HOH B 39 439 114 HOH HOH . AA 4 HOH B 40 440 59 HOH HOH . AA 4 HOH B 41 441 157 HOH HOH . AA 4 HOH B 42 442 159 HOH HOH . AA 4 HOH B 43 443 96 HOH HOH . AA 4 HOH B 44 444 10 HOH HOH . AA 4 HOH B 45 445 8 HOH HOH . AA 4 HOH B 46 446 17 HOH HOH . AA 4 HOH B 47 447 99 HOH HOH . AA 4 HOH B 48 448 81 HOH HOH . AA 4 HOH B 49 449 23 HOH HOH . AA 4 HOH B 50 450 65 HOH HOH . AA 4 HOH B 51 451 56 HOH HOH . AA 4 HOH B 52 452 49 HOH HOH . AA 4 HOH B 53 453 75 HOH HOH . AA 4 HOH B 54 454 93 HOH HOH . AA 4 HOH B 55 455 1 HOH HOH . AA 4 HOH B 56 456 52 HOH HOH . AA 4 HOH B 57 457 144 HOH HOH . AA 4 HOH B 58 458 136 HOH HOH . AA 4 HOH B 59 459 37 HOH HOH . AA 4 HOH B 60 460 33 HOH HOH . AA 4 HOH B 61 461 158 HOH HOH . AA 4 HOH B 62 462 80 HOH HOH . AA 4 HOH B 63 463 133 HOH HOH . AA 4 HOH B 64 464 28 HOH HOH . AA 4 HOH B 65 465 34 HOH HOH . AA 4 HOH B 66 466 89 HOH HOH . AA 4 HOH B 67 467 156 HOH HOH . AA 4 HOH B 68 468 3 HOH HOH . AA 4 HOH B 69 469 131 HOH HOH . AA 4 HOH B 70 470 111 HOH HOH . AA 4 HOH B 71 471 50 HOH HOH . AA 4 HOH B 72 472 118 HOH HOH . AA 4 HOH B 73 473 119 HOH HOH . AA 4 HOH B 74 474 24 HOH HOH . AA 4 HOH B 75 475 12 HOH HOH . AA 4 HOH B 76 476 27 HOH HOH . AA 4 HOH B 77 477 62 HOH HOH . AA 4 HOH B 78 478 155 HOH HOH . AA 4 HOH B 79 479 38 HOH HOH . AA 4 HOH B 80 480 32 HOH HOH . AA 4 HOH B 81 481 88 HOH HOH . AA 4 HOH B 82 482 146 HOH HOH . AA 4 HOH B 83 483 97 HOH HOH . AA 4 HOH B 84 484 108 HOH HOH . AA 4 HOH B 85 485 143 HOH HOH . AA 4 HOH B 86 486 48 HOH HOH . AA 4 HOH B 87 487 145 HOH HOH . AA 4 HOH B 88 488 107 HOH HOH . AA 4 HOH B 89 489 78 HOH HOH . AA 4 HOH B 90 490 141 HOH HOH . AA 4 HOH B 91 491 63 HOH HOH . AA 4 HOH B 92 492 148 HOH HOH . AA 4 HOH B 93 493 140 HOH HOH . AA 4 HOH B 94 494 77 HOH HOH . AA 4 HOH B 95 495 73 HOH HOH . AA 4 HOH B 96 496 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . X 3 -3.813 21.198 127.605 1 107.48 ? C2 BGC 311 B 1 HETATM 2 C C3 BGC . . . X 3 -4.533 22.377 127.048 1 103.66 ? C3 BGC 311 B 1 HETATM 3 C C4 BGC . . . X 3 -3.616 23.558 126.916 1 106.45 ? C4 BGC 311 B 1 HETATM 4 C C5 BGC . . . X 3 -2.333 23.235 126.14 1 112.75 ? C5 BGC 311 B 1 HETATM 5 C C6 BGC . . . X 3 -1.393 24.407 126.261 1 111.33 ? C6 BGC 311 B 1 HETATM 6 C C1 BGC . . . X 3 -2.592 20.844 126.752 1 111.25 ? C1 BGC 311 B 1 HETATM 7 O O1 BGC . . . X 3 -1.933 19.792 127.303 1 107.74 ? O1 BGC 311 B 1 HETATM 8 O O2 BGC . . . X 3 -4.702 20.067 127.652 1 104.56 ? O2 BGC 311 B 1 HETATM 9 O O3 BGC . . . X 3 -5.651 22.731 127.907 1 94.27 ? O3 BGC 311 B 1 HETATM 10 O O4 BGC . . . X 3 -4.305 24.608 126.226 1 102.99 ? O4 BGC 311 B 1 HETATM 11 O O5 BGC . . . X 3 -1.654 22.019 126.622 1 116.07 ? O5 BGC 311 B 1 HETATM 12 O O6 BGC . . . X 3 -0.268 24.192 125.45 1 108.15 ? O6 BGC 311 B 1 HETATM 13 H H2 BGC . . . X 3 -3.529 21.397 128.511 1 128.75 ? H2 BGC 311 B 1 HETATM 14 H H3 BGC . . . X 3 -4.892 22.144 126.178 1 124.16 ? H3 BGC 311 B 1 HETATM 15 H H4 BGC . . . X 3 -3.374 23.852 127.809 1 127.52 ? H4 BGC 311 B 1 HETATM 16 H H5 BGC . . . X 3 -2.564 23.096 125.209 1 135.08 ? H5 BGC 311 B 1 HETATM 17 H H61 BGC . . . X 3 -1.112 24.502 127.185 1 133.37 ? H61 BGC 311 B 1 HETATM 18 H H62 BGC . . . X 3 -1.847 25.216 125.976 1 133.37 ? H62 BGC 311 B 1 HETATM 19 H H1 BGC . . . X 3 -2.891 20.575 125.869 1 133.28 ? H1 BGC 311 B 1 HETATM 20 H HO1 BGC . . . X 3 -1.096 19.892 127.193 1 129.06 ? HO1 BGC 311 B 1 HETATM 21 H HO2 BGC . . . X 3 -5.33 20.223 128.203 1 125.25 ? HO2 BGC 311 B 1 HETATM 22 H HO3 BGC . . . X 3 -6.38 22.618 127.485 1 112.9 ? HO3 BGC 311 B 1 HETATM 23 H HO4 BGC . . . X 3 -4.758 25.064 126.782 1 123.36 ? HO4 BGC 311 B 1 HETATM 24 H HO6 BGC . . . X 3 -0.307 23.413 125.113 1 129.56 ? HO6 BGC 311 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 49 _model_server_stats.element_count 24 #