data_6NJZ
#
_model_server_result.job_id            4Z0p83tcIOCiMCzAWG2ffA 
_model_server_result.datetime_utc      '2024-12-22 05:58:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6njz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    6NJZ 
#
_exptl.entry_id    6NJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.79 
_cell.angle_gamma         90 
_cell.entry_id            6NJZ 
_cell.length_a            44.775 
_cell.length_b            88.224 
_cell.length_c            153.414 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,L,N 1 1 
B,D,H,I,J,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 70 1_555 A SG CYS 168 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 85 A CYS 105 1_555 A SG CYS 95 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 50 B CYS 70 1_555 B SG CYS 168 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 B SG CYS 85 B CYS 105 1_555 B SG CYS 95 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     6NJZ 
_atom_sites.fract_transf_matrix[1][1]    0.022334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 1 GOL GOL . 
F 3 GOL A 1 302 2 GOL GOL . 
G 3 GOL A 1 303 6 GOL GOL . 
H 3 GOL B 1 302 3 GOL GOL . 
I 3 GOL B 1 303 4 GOL GOL . 
J 3 GOL B 1 304 5 GOL GOL . 
K 4 BTN C 1 18 301 BTN BTN . 
L 5 HOH A 1 401 113 HOH HOH . 
L 5 HOH A 2 402 177 HOH HOH . 
L 5 HOH A 3 403 131 HOH HOH . 
L 5 HOH A 4 404 137 HOH HOH . 
L 5 HOH A 5 405 190 HOH HOH . 
L 5 HOH A 6 406 75 HOH HOH . 
L 5 HOH A 7 407 151 HOH HOH . 
L 5 HOH A 8 408 92 HOH HOH . 
L 5 HOH A 9 409 117 HOH HOH . 
L 5 HOH A 10 410 25 HOH HOH . 
L 5 HOH A 11 411 127 HOH HOH . 
L 5 HOH A 12 412 133 HOH HOH . 
L 5 HOH A 13 413 14 HOH HOH . 
L 5 HOH A 14 414 115 HOH HOH . 
L 5 HOH A 15 415 155 HOH HOH . 
L 5 HOH A 16 416 173 HOH HOH . 
L 5 HOH A 17 417 132 HOH HOH . 
L 5 HOH A 18 418 20 HOH HOH . 
L 5 HOH A 19 419 17 HOH HOH . 
L 5 HOH A 20 420 169 HOH HOH . 
L 5 HOH A 21 421 162 HOH HOH . 
L 5 HOH A 22 422 7 HOH HOH . 
L 5 HOH A 23 423 57 HOH HOH . 
L 5 HOH A 24 424 13 HOH HOH . 
L 5 HOH A 25 425 12 HOH HOH . 
L 5 HOH A 26 426 126 HOH HOH . 
L 5 HOH A 27 427 69 HOH HOH . 
L 5 HOH A 28 428 112 HOH HOH . 
L 5 HOH A 29 429 85 HOH HOH . 
L 5 HOH A 30 430 93 HOH HOH . 
L 5 HOH A 31 431 134 HOH HOH . 
L 5 HOH A 32 432 61 HOH HOH . 
L 5 HOH A 33 433 1 HOH HOH . 
L 5 HOH A 34 434 166 HOH HOH . 
L 5 HOH A 35 435 10 HOH HOH . 
L 5 HOH A 36 436 30 HOH HOH . 
L 5 HOH A 37 437 58 HOH HOH . 
L 5 HOH A 38 438 108 HOH HOH . 
L 5 HOH A 39 439 11 HOH HOH . 
L 5 HOH A 40 440 62 HOH HOH . 
L 5 HOH A 41 441 36 HOH HOH . 
L 5 HOH A 42 442 24 HOH HOH . 
L 5 HOH A 43 443 158 HOH HOH . 
L 5 HOH A 44 444 60 HOH HOH . 
L 5 HOH A 45 445 209 HOH HOH . 
L 5 HOH A 46 446 66 HOH HOH . 
L 5 HOH A 47 447 9 HOH HOH . 
L 5 HOH A 48 448 50 HOH HOH . 
L 5 HOH A 49 449 124 HOH HOH . 
L 5 HOH A 50 450 83 HOH HOH . 
L 5 HOH A 51 451 206 HOH HOH . 
L 5 HOH A 52 452 67 HOH HOH . 
L 5 HOH A 53 453 72 HOH HOH . 
L 5 HOH A 54 454 184 HOH HOH . 
L 5 HOH A 55 455 98 HOH HOH . 
L 5 HOH A 56 456 71 HOH HOH . 
L 5 HOH A 57 457 23 HOH HOH . 
L 5 HOH A 58 458 51 HOH HOH . 
L 5 HOH A 59 459 56 HOH HOH . 
L 5 HOH A 60 460 73 HOH HOH . 
L 5 HOH A 61 461 193 HOH HOH . 
L 5 HOH A 62 462 197 HOH HOH . 
L 5 HOH A 63 463 63 HOH HOH . 
L 5 HOH A 64 464 140 HOH HOH . 
L 5 HOH A 65 465 22 HOH HOH . 
L 5 HOH A 66 466 5 HOH HOH . 
L 5 HOH A 67 467 33 HOH HOH . 
L 5 HOH A 68 468 118 HOH HOH . 
L 5 HOH A 69 469 82 HOH HOH . 
L 5 HOH A 70 470 27 HOH HOH . 
L 5 HOH A 71 471 221 HOH HOH . 
L 5 HOH A 72 472 28 HOH HOH . 
L 5 HOH A 73 473 143 HOH HOH . 
L 5 HOH A 74 474 100 HOH HOH . 
L 5 HOH A 75 475 49 HOH HOH . 
L 5 HOH A 76 476 106 HOH HOH . 
L 5 HOH A 77 477 159 HOH HOH . 
L 5 HOH A 78 478 150 HOH HOH . 
L 5 HOH A 79 479 79 HOH HOH . 
L 5 HOH A 80 480 188 HOH HOH . 
L 5 HOH A 81 481 122 HOH HOH . 
L 5 HOH A 82 482 168 HOH HOH . 
L 5 HOH A 83 483 77 HOH HOH . 
L 5 HOH A 84 484 157 HOH HOH . 
L 5 HOH A 85 485 154 HOH HOH . 
L 5 HOH A 86 486 141 HOH HOH . 
L 5 HOH A 87 487 178 HOH HOH . 
L 5 HOH A 88 488 176 HOH HOH . 
L 5 HOH A 89 489 70 HOH HOH . 
L 5 HOH A 90 490 207 HOH HOH . 
L 5 HOH A 91 491 76 HOH HOH . 
L 5 HOH A 92 492 142 HOH HOH . 
L 5 HOH A 93 493 200 HOH HOH . 
L 5 HOH A 94 494 189 HOH HOH . 
L 5 HOH A 95 495 222 HOH HOH . 
L 5 HOH A 96 496 192 HOH HOH . 
L 5 HOH A 97 497 160 HOH HOH . 
L 5 HOH A 98 498 227 HOH HOH . 
L 5 HOH A 99 499 121 HOH HOH . 
L 5 HOH A 100 500 201 HOH HOH . 
L 5 HOH A 101 501 152 HOH HOH . 
L 5 HOH A 102 502 89 HOH HOH . 
L 5 HOH A 103 503 194 HOH HOH . 
L 5 HOH A 104 504 165 HOH HOH . 
L 5 HOH A 105 505 224 HOH HOH . 
L 5 HOH A 106 506 198 HOH HOH . 
M 5 HOH B 1 401 202 HOH HOH . 
M 5 HOH B 2 402 170 HOH HOH . 
M 5 HOH B 3 403 182 HOH HOH . 
M 5 HOH B 4 404 146 HOH HOH . 
M 5 HOH B 5 405 109 HOH HOH . 
M 5 HOH B 6 406 153 HOH HOH . 
M 5 HOH B 7 407 191 HOH HOH . 
M 5 HOH B 8 408 90 HOH HOH . 
M 5 HOH B 9 409 6 HOH HOH . 
M 5 HOH B 10 410 16 HOH HOH . 
M 5 HOH B 11 411 29 HOH HOH . 
M 5 HOH B 12 412 135 HOH HOH . 
M 5 HOH B 13 413 96 HOH HOH . 
M 5 HOH B 14 414 65 HOH HOH . 
M 5 HOH B 15 415 40 HOH HOH . 
M 5 HOH B 16 416 86 HOH HOH . 
M 5 HOH B 17 417 44 HOH HOH . 
M 5 HOH B 18 418 99 HOH HOH . 
M 5 HOH B 19 419 15 HOH HOH . 
M 5 HOH B 20 420 183 HOH HOH . 
M 5 HOH B 21 421 52 HOH HOH . 
M 5 HOH B 22 422 2 HOH HOH . 
M 5 HOH B 23 423 80 HOH HOH . 
M 5 HOH B 24 424 104 HOH HOH . 
M 5 HOH B 25 425 48 HOH HOH . 
M 5 HOH B 26 426 8 HOH HOH . 
M 5 HOH B 27 427 120 HOH HOH . 
M 5 HOH B 28 428 88 HOH HOH . 
M 5 HOH B 29 429 46 HOH HOH . 
M 5 HOH B 30 430 42 HOH HOH . 
M 5 HOH B 31 431 68 HOH HOH . 
M 5 HOH B 32 432 217 HOH HOH . 
M 5 HOH B 33 433 4 HOH HOH . 
M 5 HOH B 34 434 163 HOH HOH . 
M 5 HOH B 35 435 144 HOH HOH . 
M 5 HOH B 36 436 87 HOH HOH . 
M 5 HOH B 37 437 45 HOH HOH . 
M 5 HOH B 38 438 64 HOH HOH . 
M 5 HOH B 39 439 214 HOH HOH . 
M 5 HOH B 40 440 145 HOH HOH . 
M 5 HOH B 41 441 148 HOH HOH . 
M 5 HOH B 42 442 18 HOH HOH . 
M 5 HOH B 43 443 129 HOH HOH . 
M 5 HOH B 44 444 116 HOH HOH . 
M 5 HOH B 45 445 91 HOH HOH . 
M 5 HOH B 46 446 107 HOH HOH . 
M 5 HOH B 47 447 19 HOH HOH . 
M 5 HOH B 48 448 94 HOH HOH . 
M 5 HOH B 49 449 203 HOH HOH . 
M 5 HOH B 50 450 21 HOH HOH . 
M 5 HOH B 51 451 54 HOH HOH . 
M 5 HOH B 52 452 147 HOH HOH . 
M 5 HOH B 53 453 3 HOH HOH . 
M 5 HOH B 54 454 171 HOH HOH . 
M 5 HOH B 55 455 55 HOH HOH . 
M 5 HOH B 56 456 179 HOH HOH . 
M 5 HOH B 57 457 32 HOH HOH . 
M 5 HOH B 58 458 123 HOH HOH . 
M 5 HOH B 59 459 101 HOH HOH . 
M 5 HOH B 60 460 81 HOH HOH . 
M 5 HOH B 61 461 31 HOH HOH . 
M 5 HOH B 62 462 110 HOH HOH . 
M 5 HOH B 63 463 149 HOH HOH . 
M 5 HOH B 64 464 37 HOH HOH . 
M 5 HOH B 65 465 34 HOH HOH . 
M 5 HOH B 66 466 47 HOH HOH . 
M 5 HOH B 67 467 226 HOH HOH . 
M 5 HOH B 68 468 41 HOH HOH . 
M 5 HOH B 69 469 38 HOH HOH . 
M 5 HOH B 70 470 103 HOH HOH . 
M 5 HOH B 71 471 84 HOH HOH . 
M 5 HOH B 72 472 111 HOH HOH . 
M 5 HOH B 73 473 208 HOH HOH . 
M 5 HOH B 74 474 210 HOH HOH . 
M 5 HOH B 75 475 212 HOH HOH . 
M 5 HOH B 76 476 26 HOH HOH . 
M 5 HOH B 77 477 181 HOH HOH . 
M 5 HOH B 78 478 102 HOH HOH . 
M 5 HOH B 79 479 95 HOH HOH . 
M 5 HOH B 80 480 136 HOH HOH . 
M 5 HOH B 81 481 225 HOH HOH . 
M 5 HOH B 82 482 78 HOH HOH . 
M 5 HOH B 83 483 174 HOH HOH . 
M 5 HOH B 84 484 196 HOH HOH . 
M 5 HOH B 85 485 74 HOH HOH . 
M 5 HOH B 86 486 216 HOH HOH . 
M 5 HOH B 87 487 175 HOH HOH . 
M 5 HOH B 88 488 138 HOH HOH . 
M 5 HOH B 89 489 156 HOH HOH . 
N 5 HOH C 1 101 35 HOH HOH . 
N 5 HOH C 2 102 114 HOH HOH . 
N 5 HOH C 3 103 125 HOH HOH . 
N 5 HOH C 4 104 43 HOH HOH . 
N 5 HOH C 5 105 119 HOH HOH . 
N 5 HOH C 6 106 59 HOH HOH . 
N 5 HOH C 7 107 139 HOH HOH . 
N 5 HOH C 8 108 219 HOH HOH . 
N 5 HOH C 9 109 161 HOH HOH . 
N 5 HOH C 10 110 105 HOH HOH . 
N 5 HOH C 11 111 39 HOH HOH . 
N 5 HOH C 12 112 97 HOH HOH . 
O 5 HOH D 1 101 164 HOH HOH . 
O 5 HOH D 2 102 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 50.945 23.305 36.731 1 85.66 ? C1 GOL 302 B 1 
HETATM 2 O O1 GOL . . . H 3 50.213 23.845 37.81 1 59.95 ? O1 GOL 302 B 1 
HETATM 3 C C2 GOL . . . H 3 49.987 22.469 35.819 1 84.18 ? C2 GOL 302 B 1 
HETATM 4 O O2 GOL . . . H 3 49.619 21.263 36.4 1 66.35 ? O2 GOL 302 B 1 
HETATM 5 C C3 GOL . . . H 3 48.78 23.392 35.536 1 83.72 ? C3 GOL 302 B 1 
HETATM 6 O O3 GOL . . . H 3 49.268 24.465 34.771 1 84.96 ? O3 GOL 302 B 1 
HETATM 7 H H11 GOL . . . H 3 51.667 22.73 37.031 1 102.81 ? H11 GOL 302 B 1 
HETATM 8 H H12 GOL . . . H 3 51.362 23.995 36.192 1 102.81 ? H12 GOL 302 B 1 
HETATM 9 H HO1 GOL . . . H 3 50.771 24.263 38.296 1 71.96 ? HO1 GOL 302 B 1 
HETATM 10 H H2 GOL . . . H 3 50.435 22.231 34.992 1 101.03 ? H2 GOL 302 B 1 
HETATM 11 H HO2 GOL . . . H 3 49.009 20.917 35.919 1 79.64 ? HO2 GOL 302 B 1 
HETATM 12 H H31 GOL . . . H 3 48.388 23.667 36.38 1 100.47 ? H31 GOL 302 B 1 
HETATM 13 H H32 GOL . . . H 3 48.09 22.88 35.087 1 100.47 ? H32 GOL 302 B 1 
HETATM 14 H HO3 GOL . . . H 3 48.619 25.003 34.664 1 101.96 ? HO3 GOL 302 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#