data_6NK2
#
_model_server_result.job_id            mtqFkDy8WsWtAgLht0sNnQ 
_model_server_result.datetime_utc      '2024-12-21 14:47:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    6NK2 
#
_exptl.entry_id    6NK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6NK2 
_cell.length_a            155.441 
_cell.length_b            155.441 
_cell.length_c            51.906 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    'P 61' 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,H 1 1 
B,D,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 70 1_555 A SG CYS 168 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 85 A CYS 105 1_555 A SG CYS 95 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 B SG CYS 50 B CYS 70 1_555 B SG CYS 168 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 B SG CYS 85 B CYS 105 1_555 B SG CYS 95 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 C C BAL 1 C BAL 1 1_555 C N TRP 2 C TRP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 249 n n 
C1 C2 PEG sing 250 n n 
C1 H11 PEG sing 251 n n 
C1 H12 PEG sing 252 n n 
O1 HO1 PEG sing 253 n n 
C2 O2 PEG sing 254 n n 
C2 H21 PEG sing 255 n n 
C2 H22 PEG sing 256 n n 
O2 C3 PEG sing 257 n n 
C3 C4 PEG sing 258 n n 
C3 H31 PEG sing 259 n n 
C3 H32 PEG sing 260 n n 
C4 O4 PEG sing 261 n n 
C4 H41 PEG sing 262 n n 
C4 H42 PEG sing 263 n n 
O4 HO4 PEG sing 264 n n 
#
_atom_sites.entry_id                     6NK2 
_atom_sites.fract_transf_matrix[1][1]    0.006433 
_atom_sites.fract_transf_matrix[1][2]    0.003714 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PEG A 1 301 301 PEG PEG . 
F 4 HOH A 1 401 110 HOH HOH . 
F 4 HOH A 2 402 73 HOH HOH . 
F 4 HOH A 3 403 111 HOH HOH . 
F 4 HOH A 4 404 160 HOH HOH . 
F 4 HOH A 5 405 37 HOH HOH . 
F 4 HOH A 6 406 22 HOH HOH . 
F 4 HOH A 7 407 15 HOH HOH . 
F 4 HOH A 8 408 116 HOH HOH . 
F 4 HOH A 9 409 57 HOH HOH . 
F 4 HOH A 10 410 16 HOH HOH . 
F 4 HOH A 11 411 25 HOH HOH . 
F 4 HOH A 12 412 117 HOH HOH . 
F 4 HOH A 13 413 21 HOH HOH . 
F 4 HOH A 14 414 41 HOH HOH . 
F 4 HOH A 15 415 77 HOH HOH . 
F 4 HOH A 16 416 149 HOH HOH . 
F 4 HOH A 17 417 34 HOH HOH . 
F 4 HOH A 18 418 1 HOH HOH . 
F 4 HOH A 19 419 66 HOH HOH . 
F 4 HOH A 20 420 49 HOH HOH . 
F 4 HOH A 21 421 70 HOH HOH . 
F 4 HOH A 22 422 54 HOH HOH . 
F 4 HOH A 23 423 7 HOH HOH . 
F 4 HOH A 24 424 18 HOH HOH . 
F 4 HOH A 25 425 51 HOH HOH . 
F 4 HOH A 26 426 3 HOH HOH . 
F 4 HOH A 27 427 58 HOH HOH . 
F 4 HOH A 28 428 120 HOH HOH . 
F 4 HOH A 29 429 26 HOH HOH . 
F 4 HOH A 30 430 148 HOH HOH . 
F 4 HOH A 31 431 6 HOH HOH . 
F 4 HOH A 32 432 113 HOH HOH . 
F 4 HOH A 33 433 24 HOH HOH . 
F 4 HOH A 34 434 65 HOH HOH . 
F 4 HOH A 35 435 19 HOH HOH . 
F 4 HOH A 36 436 123 HOH HOH . 
F 4 HOH A 37 437 14 HOH HOH . 
F 4 HOH A 38 438 88 HOH HOH . 
F 4 HOH A 39 439 106 HOH HOH . 
F 4 HOH A 40 440 38 HOH HOH . 
F 4 HOH A 41 441 56 HOH HOH . 
F 4 HOH A 42 442 158 HOH HOH . 
F 4 HOH A 43 443 71 HOH HOH . 
F 4 HOH A 44 444 105 HOH HOH . 
F 4 HOH A 45 445 122 HOH HOH . 
F 4 HOH A 46 446 86 HOH HOH . 
F 4 HOH A 47 447 11 HOH HOH . 
F 4 HOH A 48 448 150 HOH HOH . 
F 4 HOH A 49 449 112 HOH HOH . 
F 4 HOH A 50 450 17 HOH HOH . 
F 4 HOH A 51 451 102 HOH HOH . 
F 4 HOH A 52 452 46 HOH HOH . 
F 4 HOH A 53 453 104 HOH HOH . 
F 4 HOH A 54 454 62 HOH HOH . 
F 4 HOH A 55 455 60 HOH HOH . 
F 4 HOH A 56 456 103 HOH HOH . 
F 4 HOH A 57 457 109 HOH HOH . 
F 4 HOH A 58 458 75 HOH HOH . 
F 4 HOH A 59 459 151 HOH HOH . 
F 4 HOH A 60 460 87 HOH HOH . 
F 4 HOH A 61 461 115 HOH HOH . 
F 4 HOH A 62 462 108 HOH HOH . 
F 4 HOH A 63 463 99 HOH HOH . 
F 4 HOH A 64 464 107 HOH HOH . 
F 4 HOH A 65 465 98 HOH HOH . 
F 4 HOH A 66 466 147 HOH HOH . 
F 4 HOH A 67 467 154 HOH HOH . 
F 4 HOH A 68 468 97 HOH HOH . 
F 4 HOH A 69 469 121 HOH HOH . 
F 4 HOH A 70 470 156 HOH HOH . 
F 4 HOH A 71 471 119 HOH HOH . 
F 4 HOH A 72 472 118 HOH HOH . 
F 4 HOH A 73 473 90 HOH HOH . 
F 4 HOH A 74 474 114 HOH HOH . 
F 4 HOH A 75 475 159 HOH HOH . 
F 4 HOH A 76 476 100 HOH HOH . 
F 4 HOH A 77 477 161 HOH HOH . 
F 4 HOH A 78 478 101 HOH HOH . 
F 4 HOH A 79 479 84 HOH HOH . 
F 4 HOH A 80 480 95 HOH HOH . 
F 4 HOH A 81 481 144 HOH HOH . 
G 4 HOH B 1 301 29 HOH HOH . 
G 4 HOH B 2 302 69 HOH HOH . 
G 4 HOH B 3 303 81 HOH HOH . 
G 4 HOH B 4 304 136 HOH HOH . 
G 4 HOH B 5 305 4 HOH HOH . 
G 4 HOH B 6 306 23 HOH HOH . 
G 4 HOH B 7 307 50 HOH HOH . 
G 4 HOH B 8 308 44 HOH HOH . 
G 4 HOH B 9 309 33 HOH HOH . 
G 4 HOH B 10 310 139 HOH HOH . 
G 4 HOH B 11 311 153 HOH HOH . 
G 4 HOH B 12 312 43 HOH HOH . 
G 4 HOH B 13 313 140 HOH HOH . 
G 4 HOH B 14 314 92 HOH HOH . 
G 4 HOH B 15 315 27 HOH HOH . 
G 4 HOH B 16 316 78 HOH HOH . 
G 4 HOH B 17 317 8 HOH HOH . 
G 4 HOH B 18 318 134 HOH HOH . 
G 4 HOH B 19 319 9 HOH HOH . 
G 4 HOH B 20 320 72 HOH HOH . 
G 4 HOH B 21 321 45 HOH HOH . 
G 4 HOH B 22 322 157 HOH HOH . 
G 4 HOH B 23 323 20 HOH HOH . 
G 4 HOH B 24 324 2 HOH HOH . 
G 4 HOH B 25 325 79 HOH HOH . 
G 4 HOH B 26 326 52 HOH HOH . 
G 4 HOH B 27 327 67 HOH HOH . 
G 4 HOH B 28 328 42 HOH HOH . 
G 4 HOH B 29 329 131 HOH HOH . 
G 4 HOH B 30 330 141 HOH HOH . 
G 4 HOH B 31 331 61 HOH HOH . 
G 4 HOH B 32 332 35 HOH HOH . 
G 4 HOH B 33 333 48 HOH HOH . 
G 4 HOH B 34 334 53 HOH HOH . 
G 4 HOH B 35 335 155 HOH HOH . 
G 4 HOH B 36 336 32 HOH HOH . 
G 4 HOH B 37 337 152 HOH HOH . 
G 4 HOH B 38 338 124 HOH HOH . 
G 4 HOH B 39 339 40 HOH HOH . 
G 4 HOH B 40 340 89 HOH HOH . 
G 4 HOH B 41 341 126 HOH HOH . 
G 4 HOH B 42 342 143 HOH HOH . 
G 4 HOH B 43 343 85 HOH HOH . 
G 4 HOH B 44 344 91 HOH HOH . 
G 4 HOH B 45 345 13 HOH HOH . 
G 4 HOH B 46 346 39 HOH HOH . 
G 4 HOH B 47 347 138 HOH HOH . 
G 4 HOH B 48 348 125 HOH HOH . 
G 4 HOH B 49 349 130 HOH HOH . 
G 4 HOH B 50 350 5 HOH HOH . 
G 4 HOH B 51 351 145 HOH HOH . 
G 4 HOH B 52 352 59 HOH HOH . 
G 4 HOH B 53 353 135 HOH HOH . 
G 4 HOH B 54 354 142 HOH HOH . 
G 4 HOH B 55 355 163 HOH HOH . 
G 4 HOH B 56 356 68 HOH HOH . 
G 4 HOH B 57 357 55 HOH HOH . 
G 4 HOH B 58 358 94 HOH HOH . 
G 4 HOH B 59 359 96 HOH HOH . 
G 4 HOH B 60 360 162 HOH HOH . 
G 4 HOH B 61 361 76 HOH HOH . 
G 4 HOH B 62 362 132 HOH HOH . 
G 4 HOH B 63 363 146 HOH HOH . 
G 4 HOH B 64 364 93 HOH HOH . 
G 4 HOH B 65 365 80 HOH HOH . 
G 4 HOH B 66 366 127 HOH HOH . 
H 4 HOH C 1 101 64 HOH HOH . 
H 4 HOH C 2 102 31 HOH HOH . 
H 4 HOH C 3 103 63 HOH HOH . 
H 4 HOH C 4 104 10 HOH HOH . 
H 4 HOH C 5 105 82 HOH HOH . 
H 4 HOH C 6 106 83 HOH HOH . 
H 4 HOH C 7 107 28 HOH HOH . 
H 4 HOH C 8 108 74 HOH HOH . 
H 4 HOH C 9 109 36 HOH HOH . 
H 4 HOH C 10 110 30 HOH HOH . 
I 4 HOH D 1 101 12 HOH HOH . 
I 4 HOH D 2 102 47 HOH HOH . 
I 4 HOH D 3 103 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . E 3 -87.011 6.853 9.033 1 135.67 ? C1 PEG 301 A 1 
HETATM 2 O O1 PEG . . . E 3 -86.094 6.239 9.925 1 136.93 ? O1 PEG 301 A 1 
HETATM 3 C C2 PEG . . . E 3 -87.661 5.844 8.141 1 134.56 ? C2 PEG 301 A 1 
HETATM 4 O O2 PEG . . . E 3 -88.784 6.436 7.503 1 133.61 ? O2 PEG 301 A 1 
HETATM 5 C C3 PEG . . . E 3 -89.012 5.926 6.196 1 132.84 ? C3 PEG 301 A 1 
HETATM 6 C C4 PEG . . . E 3 -90.1 6.719 5.535 1 132.24 ? C4 PEG 301 A 1 
HETATM 7 O O4 PEG . . . E 3 -91.357 6.084 5.665 1 132.26 ? O4 PEG 301 A 1 
HETATM 8 H H11 PEG . . . E 3 -86.489 7.597 8.433 1 162.85 ? H11 PEG 301 A 1 
HETATM 9 H H12 PEG . . . E 3 -87.769 7.386 9.605 1 162.85 ? H12 PEG 301 A 1 
HETATM 10 H HO1 PEG . . . E 3 -86.469 6.312 10.841 1 164.37 ? HO1 PEG 301 A 1 
HETATM 11 H H21 PEG . . . E 3 -87.974 4.972 8.713 1 161.53 ? H21 PEG 301 A 1 
HETATM 12 H H22 PEG . . . E 3 -86.956 5.482 7.395 1 161.53 ? H22 PEG 301 A 1 
HETATM 13 H H31 PEG . . . E 3 -89.292 4.874 6.237 1 159.45 ? H31 PEG 301 A 1 
HETATM 14 H H32 PEG . . . E 3 -88.102 5.975 5.6 1 159.45 ? H32 PEG 301 A 1 
HETATM 15 H H41 PEG . . . E 3 -89.948 6.85 4.464 1 158.74 ? H41 PEG 301 A 1 
HETATM 16 H H42 PEG . . . E 3 -90.229 7.713 5.959 1 158.74 ? H42 PEG 301 A 1 
HETATM 17 H HO4 PEG . . . E 3 -91.629 6.145 6.618 1 158.77 ? HO4 PEG 301 A 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           17 
#