data_6NK8 # _model_server_result.job_id jCEnkYls7ZDTLaGogb-s7g _model_server_result.datetime_utc '2025-03-25 13:03:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 6NK8 # _exptl.entry_id 6NK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NK8 _cell.length_a 83.256 _cell.length_b 105.669 _cell.length_c 123.764 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 83.256 0 61.882 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 28 A GLU 400 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A OE2 GLU 41 A GLU 413 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc3 A OD1 ASP 44 A ASP 416 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A OD2 ASP 83 A ASP 455 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc5 C MG MG . A MG 701 1_555 I O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C MG MG . A MG 701 1_555 I O HOH . A HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 C MG MG . A MG 701 1_555 I O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 C MG MG . A MG 701 1_555 I O HOH . A HOH 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc9 D MG MG . A MG 702 1_555 I O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc10 D MG MG . A MG 702 1_555 I O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc11 D MG MG . A MG 702 1_555 I O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc12 E MG MG . A MG 703 1_555 I O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc13 E MG MG . A MG 703 1_555 B OE2 GLU 41 B GLU 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc14 E MG MG . A MG 703 1_555 B OD2 ASP 48 B ASP 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc15 E MG MG . A MG 703 1_555 J O HOH . B HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc16 E MG MG . A MG 703 1_555 J O HOH . B HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc17 E MG MG . A MG 703 1_555 J O HOH . B HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc18 F MG MG . A MG 704 1_555 I O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc19 F MG MG . A MG 704 1_555 B OD1 ASP 44 B ASP 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 F MG MG . A MG 704 4_566 B OD2 ASP 204 B ASP 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc21 F MG MG . A MG 704 1_555 J O HOH . B HOH 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc22 F MG MG . A MG 704 1_555 J O HOH . B HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc23 I O HOH . A HOH 808 4_566 G MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc24 B OE1 GLU 28 B GLU 400 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc25 B OD2 ASP 83 B ASP 455 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc26 B OD1 ASP 204 B ASP 576 1_555 G MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc27 G MG MG . B MG 701 1_555 J O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc28 G MG MG . B MG 701 1_555 J O HOH . B HOH 816 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc29 G MG MG . B MG 701 1_555 J O HOH . B HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc30 G MG MG . B MG 701 1_555 J O HOH . B HOH 843 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc31 H MG MG . B MG 702 1_555 J O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc32 H MG MG . B MG 702 1_555 J O HOH . B HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc33 H MG MG . B MG 702 1_555 J O HOH . B HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NK8 _atom_sites.fract_transf_matrix[1][1] 0.012011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 701 2 MG MG . D 2 MG A 1 702 3 MG MG . E 2 MG A 1 703 4 MG MG . F 2 MG A 1 704 6 MG MG . G 2 MG B 1 701 1 MG MG . H 2 MG B 1 702 5 MG MG . I 3 HOH A 1 801 212 HOH HOH . I 3 HOH A 2 802 123 HOH HOH . I 3 HOH A 3 803 207 HOH HOH . I 3 HOH A 4 804 101 HOH HOH . I 3 HOH A 5 805 187 HOH HOH . I 3 HOH A 6 806 198 HOH HOH . I 3 HOH A 7 807 99 HOH HOH . I 3 HOH A 8 808 1 HOH HOH . I 3 HOH A 9 809 2 HOH HOH . I 3 HOH A 10 810 120 HOH HOH . I 3 HOH A 11 811 85 HOH HOH . I 3 HOH A 12 812 196 HOH HOH . I 3 HOH A 13 813 14 HOH HOH . I 3 HOH A 14 814 65 HOH HOH . I 3 HOH A 15 815 183 HOH HOH . I 3 HOH A 16 816 193 HOH HOH . I 3 HOH A 17 817 57 HOH HOH . I 3 HOH A 18 818 18 HOH HOH . I 3 HOH A 19 819 153 HOH HOH . I 3 HOH A 20 820 11 HOH HOH . I 3 HOH A 21 821 127 HOH HOH . I 3 HOH A 22 822 42 HOH HOH . I 3 HOH A 23 823 200 HOH HOH . I 3 HOH A 24 824 61 HOH HOH . I 3 HOH A 25 825 152 HOH HOH . I 3 HOH A 26 826 73 HOH HOH . I 3 HOH A 27 827 82 HOH HOH . I 3 HOH A 28 828 100 HOH HOH . I 3 HOH A 29 829 155 HOH HOH . I 3 HOH A 30 830 146 HOH HOH . I 3 HOH A 31 831 151 HOH HOH . I 3 HOH A 32 832 190 HOH HOH . I 3 HOH A 33 833 194 HOH HOH . I 3 HOH A 34 834 165 HOH HOH . J 3 HOH B 1 801 21 HOH HOH . J 3 HOH B 2 802 211 HOH HOH . J 3 HOH B 3 803 50 HOH HOH . J 3 HOH B 4 804 44 HOH HOH . J 3 HOH B 5 805 13 HOH HOH . J 3 HOH B 6 806 40 HOH HOH . J 3 HOH B 7 807 81 HOH HOH . J 3 HOH B 8 808 5 HOH HOH . J 3 HOH B 9 809 41 HOH HOH . J 3 HOH B 10 810 126 HOH HOH . J 3 HOH B 11 811 145 HOH HOH . J 3 HOH B 12 812 16 HOH HOH . J 3 HOH B 13 813 192 HOH HOH . J 3 HOH B 14 814 76 HOH HOH . J 3 HOH B 15 815 202 HOH HOH . J 3 HOH B 16 816 45 HOH HOH . J 3 HOH B 17 817 182 HOH HOH . J 3 HOH B 18 818 203 HOH HOH . J 3 HOH B 19 819 210 HOH HOH . J 3 HOH B 20 820 208 HOH HOH . J 3 HOH B 21 821 55 HOH HOH . J 3 HOH B 22 822 47 HOH HOH . J 3 HOH B 23 823 33 HOH HOH . J 3 HOH B 24 824 8 HOH HOH . J 3 HOH B 25 825 35 HOH HOH . J 3 HOH B 26 826 74 HOH HOH . J 3 HOH B 27 827 204 HOH HOH . J 3 HOH B 28 828 209 HOH HOH . J 3 HOH B 29 829 189 HOH HOH . J 3 HOH B 30 830 199 HOH HOH . J 3 HOH B 31 831 9 HOH HOH . J 3 HOH B 32 832 111 HOH HOH . J 3 HOH B 33 833 184 HOH HOH . J 3 HOH B 34 834 89 HOH HOH . J 3 HOH B 35 835 148 HOH HOH . J 3 HOH B 36 836 191 HOH HOH . J 3 HOH B 37 837 102 HOH HOH . J 3 HOH B 38 838 181 HOH HOH . J 3 HOH B 39 839 6 HOH HOH . J 3 HOH B 40 840 185 HOH HOH . J 3 HOH B 41 841 19 HOH HOH . J 3 HOH B 42 842 205 HOH HOH . J 3 HOH B 43 843 31 HOH HOH . J 3 HOH B 44 844 186 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 47.278 _atom_site.Cartn_y 47.189 _atom_site.Cartn_z 49.337 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #