data_6NKD # _model_server_result.job_id Ypr8CafxQQuqEVwj9KFVMw _model_server_result.datetime_utc '2024-10-10 11:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 6NKD # _exptl.entry_id 6NKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6NKD _cell.length_a 93.12 _cell.length_b 93.12 _cell.length_c 196.898 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.56 80.644286 65.632667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 80 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 80 B CYS 80 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C LYS 32 A LYS 32 1_555 A N MSE 33 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 33 A MSE 33 1_555 A N GLU 34 A GLU 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C ALA 58 A ALA 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 59 A MSE 59 1_555 A N LEU 60 A LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C ILE 65 A ILE 65 1_555 A N MSE 66 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 66 A MSE 66 1_555 A N GLU 67 A GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C GLY 113 A GLY 113 1_555 A N MSE 114 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 114 A MSE 114 1_555 A N LEU 115 A LEU 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C ALA 197 A ALA 197 1_555 A N MSE 198 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 198 A MSE 198 1_555 A N SER 199 A SER 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C LYS 32 B LYS 32 1_555 B N MSE 33 B MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 33 B MSE 33 1_555 B N GLU 34 B GLU 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C ALA 58 B ALA 58 1_555 B N MSE 59 B MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C MSE 59 B MSE 59 1_555 B N LEU 60 B LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C ILE 65 B ILE 65 1_555 B N MSE 66 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 66 B MSE 66 1_555 B N GLU 67 B GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 B C GLY 113 B GLY 113 1_555 B N MSE 114 B MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C MSE 114 B MSE 114 1_555 B N LEU 115 B LEU 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale19 B C ALA 197 B ALA 197 1_555 B N MSE 198 B MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 198 B MSE 198 1_555 B N SER 199 B SER 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6NKD _atom_sites.fract_transf_matrix[1][1] 0.010739 _atom_sites.fract_transf_matrix[1][2] 0.0062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 241 SO4 SO4 . D 2 SO4 A 1 302 250 SO4 SO4 . E 3 EDO A 1 303 251 EDO EDO . F 4 CL A 1 304 252 CL CL . G 5 FMT A 1 305 253 FMT FMT . H 2 SO4 B 1 301 250 SO4 SO4 . I 2 SO4 B 1 302 251 SO4 SO4 . J 2 SO4 B 1 303 252 SO4 SO4 . K 3 EDO B 1 304 253 EDO EDO . L 4 CL B 1 305 254 CL CL . M 3 EDO B 1 306 256 EDO EDO . N 6 HOH A 1 401 4 HOH HOH . N 6 HOH A 2 402 1 HOH HOH . N 6 HOH A 3 403 12 HOH HOH . N 6 HOH A 4 404 7 HOH HOH . N 6 HOH A 5 405 19 HOH HOH . N 6 HOH A 6 406 11 HOH HOH . N 6 HOH A 7 407 14 HOH HOH . N 6 HOH A 8 408 2 HOH HOH . N 6 HOH A 9 409 3 HOH HOH . N 6 HOH A 10 410 17 HOH HOH . N 6 HOH A 11 411 16 HOH HOH . N 6 HOH A 12 412 13 HOH HOH . O 6 HOH B 1 401 18 HOH HOH . O 6 HOH B 2 402 20 HOH HOH . O 6 HOH B 3 403 5 HOH HOH . O 6 HOH B 4 404 6 HOH HOH . O 6 HOH B 5 405 15 HOH HOH . O 6 HOH B 6 406 8 HOH HOH . O 6 HOH B 7 407 10 HOH HOH . O 6 HOH B 8 408 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 2 48.193 9.134 59.514 1 128.29 ? S SO4 301 B 1 HETATM 2 O O1 SO4 . . . H 2 47.142 10.144 59.429 1 128.15 ? O1 SO4 301 B 1 HETATM 3 O O2 SO4 . . . H 2 48.294 8.426 58.24 1 128.17 ? O2 SO4 301 B 1 HETATM 4 O O3 SO4 . . . H 2 47.868 8.182 60.572 1 128.18 ? O3 SO4 301 B 1 HETATM 5 O O4 SO4 . . . H 2 49.467 9.783 59.813 1 128.05 ? O4 SO4 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #