data_6NKG
#
_model_server_result.job_id            cQopgfZpq28S5ns6yedZuA 
_model_server_result.datetime_utc      '2025-03-05 22:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6nkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6NKG 
#
_exptl.entry_id    6NKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6NKG 
_cell.length_a            60.11 
_cell.length_b            60.11 
_cell.length_c            169.898 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6NKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 32 A ARG 32 1_555 A N MSE 33 A MSE 33 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C ARG 32 A ARG 32 1_555 A N MSE 33 A MSE 33 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C MSE 33 A MSE 33 1_555 A N LEU 34 A LEU 34 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C MSE 33 A MSE 33 1_555 A N LEU 34 A LEU 34 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C VAL 72 A VAL 72 1_555 A N MSE 73 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 73 A MSE 73 1_555 A N ASP 74 A ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 A C PRO 113 A PRO 113 1_555 A N MSE 114 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C MSE 114 A MSE 114 1_555 A N CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale9 A C PRO 117 A PRO 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C MSE 118 A MSE 118 1_555 A N TYR 119 A TYR 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 A C THR 125 A THR 125 1_555 A N MSE 126 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C MSE 126 A MSE 126 1_555 A N TYR 127 A TYR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale13 A C GLU 151 A GLU 151 1_555 A N MSE 152 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C MSE 152 A MSE 152 1_555 A N GLU 153 A GLU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 A C PRO 159 A PRO 159 1_555 A N MSE 160 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C MSE 160 A MSE 160 1_555 A N ASN 161 A ASN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale17 A C ASP 178 A ASP 178 1_555 A N MSE 179 A MSE 179 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 A C ASP 178 A ASP 178 1_555 A N MSE 179 A MSE 179 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 A C MSE 179 A MSE 179 1_555 A N ILE 180 A ILE 180 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MSE 179 A MSE 179 1_555 A N ILE 180 A ILE 180 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale21 A C HIS 193 A HIS 193 1_555 A N MSE 194 A MSE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale22 A C MSE 194 A MSE 194 1_555 A N ILE 195 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 90 n n 
C1 C2 EDO sing 91 n n 
C1 H11 EDO sing 92 n n 
C1 H12 EDO sing 93 n n 
O1 HO1 EDO sing 94 n n 
C2 O2 EDO sing 95 n n 
C2 H21 EDO sing 96 n n 
C2 H22 EDO sing 97 n n 
O2 HO2 EDO sing 98 n n 
#
_atom_sites.entry_id                     6NKG 
_atom_sites.fract_transf_matrix[1][1]    0.016636 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 301 EDO EDO . 
C 2 EDO A 1 302 302 EDO EDO . 
D 3 ACY A 1 303 303 ACY ACY . 
E 4 HOH A 1 401 39 HOH HOH . 
E 4 HOH A 2 402 48 HOH HOH . 
E 4 HOH A 3 403 44 HOH HOH . 
E 4 HOH A 4 404 45 HOH HOH . 
E 4 HOH A 5 405 11 HOH HOH . 
E 4 HOH A 6 406 50 HOH HOH . 
E 4 HOH A 7 407 53 HOH HOH . 
E 4 HOH A 8 408 38 HOH HOH . 
E 4 HOH A 9 409 30 HOH HOH . 
E 4 HOH A 10 410 37 HOH HOH . 
E 4 HOH A 11 411 42 HOH HOH . 
E 4 HOH A 12 412 23 HOH HOH . 
E 4 HOH A 13 413 21 HOH HOH . 
E 4 HOH A 14 414 3 HOH HOH . 
E 4 HOH A 15 415 29 HOH HOH . 
E 4 HOH A 16 416 52 HOH HOH . 
E 4 HOH A 17 417 10 HOH HOH . 
E 4 HOH A 18 418 12 HOH HOH . 
E 4 HOH A 19 419 25 HOH HOH . 
E 4 HOH A 20 420 14 HOH HOH . 
E 4 HOH A 21 421 8 HOH HOH . 
E 4 HOH A 22 422 61 HOH HOH . 
E 4 HOH A 23 423 51 HOH HOH . 
E 4 HOH A 24 424 19 HOH HOH . 
E 4 HOH A 25 425 59 HOH HOH . 
E 4 HOH A 26 426 33 HOH HOH . 
E 4 HOH A 27 427 13 HOH HOH . 
E 4 HOH A 28 428 9 HOH HOH . 
E 4 HOH A 29 429 32 HOH HOH . 
E 4 HOH A 30 430 56 HOH HOH . 
E 4 HOH A 31 431 15 HOH HOH . 
E 4 HOH A 32 432 6 HOH HOH . 
E 4 HOH A 33 433 27 HOH HOH . 
E 4 HOH A 34 434 62 HOH HOH . 
E 4 HOH A 35 435 49 HOH HOH . 
E 4 HOH A 36 436 20 HOH HOH . 
E 4 HOH A 37 437 31 HOH HOH . 
E 4 HOH A 38 438 26 HOH HOH . 
E 4 HOH A 39 439 2 HOH HOH . 
E 4 HOH A 40 440 5 HOH HOH . 
E 4 HOH A 41 441 22 HOH HOH . 
E 4 HOH A 42 442 55 HOH HOH . 
E 4 HOH A 43 443 4 HOH HOH . 
E 4 HOH A 44 444 17 HOH HOH . 
E 4 HOH A 45 445 67 HOH HOH . 
E 4 HOH A 46 446 41 HOH HOH . 
E 4 HOH A 47 447 66 HOH HOH . 
E 4 HOH A 48 448 60 HOH HOH . 
E 4 HOH A 49 449 16 HOH HOH . 
E 4 HOH A 50 450 7 HOH HOH . 
E 4 HOH A 51 451 34 HOH HOH . 
E 4 HOH A 52 452 1 HOH HOH . 
E 4 HOH A 53 453 47 HOH HOH . 
E 4 HOH A 54 454 28 HOH HOH . 
E 4 HOH A 55 455 57 HOH HOH . 
E 4 HOH A 56 456 40 HOH HOH . 
E 4 HOH A 57 457 24 HOH HOH . 
E 4 HOH A 58 458 63 HOH HOH . 
E 4 HOH A 59 459 35 HOH HOH . 
E 4 HOH A 60 460 18 HOH HOH . 
E 4 HOH A 61 461 64 HOH HOH . 
E 4 HOH A 62 462 46 HOH HOH . 
E 4 HOH A 63 463 54 HOH HOH . 
E 4 HOH A 64 464 65 HOH HOH . 
E 4 HOH A 65 465 43 HOH HOH . 
E 4 HOH A 66 466 36 HOH HOH . 
E 4 HOH A 67 467 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 -6.521 21.077 31.358 1 72.7 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . C 2 -5.861 20.718 30.137 1 64.2 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . C 2 -6.768 22.583 31.408 1 75.48 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . C 2 -7.817 22.943 30.499 1 70.98 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#