data_6NKI # _model_server_result.job_id xZyI3VOTULXEEvwdgeuz0Q _model_server_result.datetime_utc '2024-11-23 07:53:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6nki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2501}' # _entry.id 6NKI # _exptl.entry_id 6NKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6NKI _cell.length_a 81.636 _cell.length_b 91.644 _cell.length_c 124.596 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 124.596 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 235 n n PA O2A NDP sing 236 n n PA O5B NDP sing 237 n n PA O3 NDP sing 238 n n O2A HOA2 NDP sing 239 n n O5B C5B NDP sing 240 n n C5B C4B NDP sing 241 n n C5B H51A NDP sing 242 n n C5B H52A NDP sing 243 n n C4B O4B NDP sing 244 n n C4B C3B NDP sing 245 n n C4B H4B NDP sing 246 n n O4B C1B NDP sing 247 n n C3B O3B NDP sing 248 n n C3B C2B NDP sing 249 n n C3B H3B NDP sing 250 n n O3B HO3A NDP sing 251 n n C2B O2B NDP sing 252 n n C2B C1B NDP sing 253 n n C2B H2B NDP sing 254 n n O2B P2B NDP sing 255 n n C1B N9A NDP sing 256 n n C1B H1B NDP sing 257 n n N9A C8A NDP sing 258 n y N9A C4A NDP sing 259 n y C8A N7A NDP doub 260 n y C8A H8A NDP sing 261 n n N7A C5A NDP sing 262 n y C5A C6A NDP sing 263 n y C5A C4A NDP doub 264 n y C6A N6A NDP sing 265 n n C6A N1A NDP doub 266 n y N6A H61A NDP sing 267 n n N6A H62A NDP sing 268 n n N1A C2A NDP sing 269 n y C2A N3A NDP doub 270 n y C2A H2A NDP sing 271 n n N3A C4A NDP sing 272 n y O3 PN NDP sing 273 n n PN O1N NDP doub 274 n n PN O2N NDP sing 275 n n PN O5D NDP sing 276 n n O2N H21N NDP sing 277 n n O5D C5D NDP sing 278 n n C5D C4D NDP sing 279 n n C5D H51N NDP sing 280 n n C5D H52N NDP sing 281 n n C4D O4D NDP sing 282 n n C4D C3D NDP sing 283 n n C4D H4D NDP sing 284 n n O4D C1D NDP sing 285 n n C3D O3D NDP sing 286 n n C3D C2D NDP sing 287 n n C3D H3D NDP sing 288 n n O3D HO3N NDP sing 289 n n C2D O2D NDP sing 290 n n C2D C1D NDP sing 291 n n C2D H2D NDP sing 292 n n O2D HO2N NDP sing 293 n n C1D N1N NDP sing 294 n n C1D H1D NDP sing 295 n n N1N C2N NDP sing 296 n n N1N C6N NDP sing 297 n n C2N C3N NDP doub 298 n n C2N H2N NDP sing 299 n n C3N C7N NDP sing 300 n n C3N C4N NDP sing 301 n n C7N O7N NDP doub 302 n n C7N N7N NDP sing 303 n n N7N H71N NDP sing 304 n n N7N H72N NDP sing 305 n n C4N C5N NDP sing 306 n n C4N H41N NDP sing 307 n n C4N H42N NDP sing 308 n n C5N C6N NDP doub 309 n n C5N H5N NDP sing 310 n n C6N H6N NDP sing 311 n n P2B O1X NDP doub 312 n n P2B O2X NDP sing 313 n n P2B O3X NDP sing 314 n n O2X HOP2 NDP sing 315 n n O3X HOP3 NDP sing 316 n n # _atom_sites.entry_id 6NKI _atom_sites.fract_transf_matrix[1][1] 0.012249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NDP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2501 _pdbx_nonpoly_scheme.auth_seq_num 2501 _pdbx_nonpoly_scheme.pdb_mon_id NDP _pdbx_nonpoly_scheme.auth_mon_id NDP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 21.638 31.403 71.99 1 169.33 ? PA NDP 2501 A 1 HETATM 2 O O1A NDP . . . B 2 22.546 30.211 71.897 1 169.39 ? O1A NDP 2501 A 1 HETATM 3 O O2A NDP . . . B 2 22.233 32.765 72.234 1 169.53 ? O2A NDP 2501 A 1 HETATM 4 O O5B NDP . . . B 2 20.335 31.164 73.032 1 164.84 ? O5B NDP 2501 A 1 HETATM 5 C C5B NDP . . . B 2 20.807 30.584 74.197 1 164.22 ? C5B NDP 2501 A 1 HETATM 6 C C4B NDP . . . B 2 20.226 31.328 75.402 1 160.51 ? C4B NDP 2501 A 1 HETATM 7 O O4B NDP . . . B 2 20.949 30.89 76.585 1 162.61 ? O4B NDP 2501 A 1 HETATM 8 C C3B NDP . . . B 2 20.373 32.831 75.228 1 156.95 ? C3B NDP 2501 A 1 HETATM 9 O O3B NDP . . . B 2 19.267 33.452 75.792 1 155.14 ? O3B NDP 2501 A 1 HETATM 10 C C2B NDP . . . B 2 21.625 33.209 76.099 1 157.46 ? C2B NDP 2501 A 1 HETATM 11 O O2B NDP . . . B 2 21.58 34.45 76.655 1 151.21 ? O2B NDP 2501 A 1 HETATM 12 C C1B NDP . . . B 2 21.502 32.063 77.217 1 162.49 ? C1B NDP 2501 A 1 HETATM 13 N N9A NDP . . . B 2 22.832 31.715 77.836 1 167.48 ? N9A NDP 2501 A 1 HETATM 14 C C8A NDP . . . B 2 23.972 31.136 77.232 1 169.45 ? C8A NDP 2501 A 1 HETATM 15 N N7A NDP . . . B 2 25.005 30.96 78.096 1 173.14 ? N7A NDP 2501 A 1 HETATM 16 C C5A NDP . . . B 2 24.507 31.454 79.322 1 174.02 ? C5A NDP 2501 A 1 HETATM 17 C C6A NDP . . . B 2 25.078 31.56 80.609 1 177.47 ? C6A NDP 2501 A 1 HETATM 18 N N6A NDP . . . B 2 26.368 31.137 80.853 1 182.01 ? N6A NDP 2501 A 1 HETATM 19 N N1A NDP . . . B 2 24.378 32.09 81.657 1 176.86 ? N1A NDP 2501 A 1 HETATM 20 C C2A NDP . . . B 2 23.106 32.5 81.357 1 172.9 ? C2A NDP 2501 A 1 HETATM 21 N N3A NDP . . . B 2 22.426 32.463 80.211 1 169.93 ? N3A NDP 2501 A 1 HETATM 22 C C4A NDP . . . B 2 23.161 31.925 79.176 1 170.03 ? C4A NDP 2501 A 1 HETATM 23 O O3 NDP . . . B 2 20.891 31.499 70.487 1 170.1 ? O3 NDP 2501 A 1 HETATM 24 P PN NDP . . . B 2 20.529 30.03 69.917 1 173.67 ? PN NDP 2501 A 1 HETATM 25 O O1N NDP . . . B 2 19.664 30.165 68.725 1 170.84 ? O1N NDP 2501 A 1 HETATM 26 O O2N NDP . . . B 2 21.747 29.13 69.893 1 176.39 ? O2N NDP 2501 A 1 HETATM 27 O O5D NDP . . . B 2 19.427 29.09 71.068 1 174.22 ? O5D NDP 2501 A 1 HETATM 28 C C5D NDP . . . B 2 18.198 29.757 71.372 1 173.83 ? C5D NDP 2501 A 1 HETATM 29 C C4D NDP . . . B 2 16.957 28.741 71.461 1 172.63 ? C4D NDP 2501 A 1 HETATM 30 O O4D NDP . . . B 2 16.693 28.14 70.185 1 171.5 ? O4D NDP 2501 A 1 HETATM 31 C C3D NDP . . . B 2 17.218 27.568 72.451 1 174.41 ? C3D NDP 2501 A 1 HETATM 32 O O3D NDP . . . B 2 16.234 27.596 73.467 1 173.59 ? O3D NDP 2501 A 1 HETATM 33 C C2D NDP . . . B 2 17.108 26.249 71.635 1 173.44 ? C2D NDP 2501 A 1 HETATM 34 O O2D NDP . . . B 2 16.219 25.305 72.205 1 173.46 ? O2D NDP 2501 A 1 HETATM 35 C C1D NDP . . . B 2 16.492 26.699 70.337 1 169.84 ? C1D NDP 2501 A 1 HETATM 36 N N1N NDP . . . B 2 17.132 26.106 69.068 1 166.06 ? N1N NDP 2501 A 1 HETATM 37 C C2N NDP . . . B 2 17.023 26.898 67.965 1 160.28 ? C2N NDP 2501 A 1 HETATM 38 C C3N NDP . . . B 2 17.552 26.567 66.778 1 156.49 ? C3N NDP 2501 A 1 HETATM 39 C C7N NDP . . . B 2 17.212 27.547 65.773 1 147.64 ? C7N NDP 2501 A 1 HETATM 40 O O7N NDP . . . B 2 17.203 28.765 65.923 1 148 ? O7N NDP 2501 A 1 HETATM 41 N N7N NDP . . . B 2 16.741 27.01 64.619 1 137.36 ? N7N NDP 2501 A 1 HETATM 42 C C4N NDP . . . B 2 18.363 25.283 66.545 1 161.2 ? C4N NDP 2501 A 1 HETATM 43 C C5N NDP . . . B 2 18.313 24.387 67.75 1 164.96 ? C5N NDP 2501 A 1 HETATM 44 C C6N NDP . . . B 2 17.735 24.785 68.923 1 166.4 ? C6N NDP 2501 A 1 HETATM 45 P P2B NDP . . . B 2 22.643 35.724 75.784 1 145.88 ? P2B NDP 2501 A 1 HETATM 46 O O1X NDP . . . B 2 22.221 36.945 76.541 1 143.47 ? O1X NDP 2501 A 1 HETATM 47 O O2X NDP . . . B 2 24.068 35.212 76.02 1 149.17 ? O2X NDP 2501 A 1 HETATM 48 O O3X NDP . . . B 2 22.07 35.533 74.415 1 141.66 ? O3X NDP 2501 A 1 HETATM 49 H H51A NDP . . . B 2 20.561 29.646 74.228 1 197.09 ? H51A NDP 2501 A 1 HETATM 50 H H52A NDP . . . B 2 21.776 30.611 74.217 1 197.09 ? H52A NDP 2501 A 1 HETATM 51 H H4B NDP . . . B 2 19.287 31.104 75.49 1 192.64 ? H4B NDP 2501 A 1 HETATM 52 H H3B NDP . . . B 2 20.545 33.079 74.306 1 188.37 ? H3B NDP 2501 A 1 HETATM 53 H HO3A NDP . . . B 2 18.931 33.927 75.173 1 186.19 ? HO3A NDP 2501 A 1 HETATM 54 H H2B NDP . . . B 2 22.425 33.029 75.58 1 188.97 ? H2B NDP 2501 A 1 HETATM 55 H H1B NDP . . . B 2 20.914 32.34 77.938 1 195.02 ? H1B NDP 2501 A 1 HETATM 56 H H8A NDP . . . B 2 23.982 30.911 76.33 1 203.37 ? H8A NDP 2501 A 1 HETATM 57 H H61A NDP . . . B 2 27.01 31.708 80.826 1 218.43 ? H61A NDP 2501 A 1 HETATM 58 H H62A NDP . . . B 2 26.511 30.307 81.03 1 218.43 ? H62A NDP 2501 A 1 HETATM 59 H H2A NDP . . . B 2 22.652 32.863 82.083 1 207.51 ? H2A NDP 2501 A 1 HETATM 60 H H51N NDP . . . B 2 17.99 30.434 70.709 1 208.62 ? H51N NDP 2501 A 1 HETATM 61 H H52N NDP . . . B 2 18.256 30.24 72.212 1 208.62 ? H52N NDP 2501 A 1 HETATM 62 H H4D NDP . . . B 2 16.193 29.257 71.762 1 207.19 ? H4D NDP 2501 A 1 HETATM 63 H H3D NDP . . . B 2 18.128 27.668 72.773 1 209.32 ? H3D NDP 2501 A 1 HETATM 64 H HO3N NDP . . . B 2 16.649 27.442 74.193 1 208.33 ? HO3N NDP 2501 A 1 HETATM 65 H H2D NDP . . . B 2 17.99 25.871 71.495 1 208.15 ? H2D NDP 2501 A 1 HETATM 66 H HO2N NDP . . . B 2 16.713 24.692 72.525 1 208.18 ? HO2N NDP 2501 A 1 HETATM 67 H H1D NDP . . . B 2 15.555 26.456 70.392 1 203.83 ? H1D NDP 2501 A 1 HETATM 68 H H2N NDP . . . B 2 16.558 27.697 68.065 1 192.36 ? H2N NDP 2501 A 1 HETATM 69 H H71N NDP . . . B 2 16.478 27.528 63.985 1 164.86 ? H71N NDP 2501 A 1 HETATM 70 H H72N NDP . . . B 2 16.709 26.156 64.528 1 164.86 ? H72N NDP 2501 A 1 HETATM 71 H H41N NDP . . . B 2 18.026 24.8 65.775 1 193.47 ? H41N NDP 2501 A 1 HETATM 72 H H42N NDP . . . B 2 19.289 25.496 66.346 1 193.47 ? H42N NDP 2501 A 1 HETATM 73 H H5N NDP . . . B 2 18.688 23.538 67.69 1 197.97 ? H5N NDP 2501 A 1 HETATM 74 H H6N NDP . . . B 2 17.702 24.232 69.67 1 199.71 ? H6N NDP 2501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 74 #